Procedure:   histopathology          


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Data set MPD ID Procedure / Protocol Drug or Challenge Phenotype Measure Panel No. of Strains Sex Age Sample Size (Avg) Year
    Berndt4 48301 histopathology (none) lung adenoma frequency   [%]  adenoma_freq inbred 28 both 90wks N=10 2011
    Berndt4 48302 histopathology (none) lung adenoma severity score   [score]  adenoma_score inbred 28 both 90wks N=10 2011
    DiCurzio1 36606 histopathology (none) adrenal total width (diameter)   [µm]  adr_width BXD w/par 65 both 7-10wks* N=3 2010
    DiCurzio1 36607 histopathology (none) adrenal medulla width   [µm]  adr_medul_width BXD w/par 65 both 7-10wks* N=3 2010
    DiCurzio1 36608 histopathology (none) adrenal cortex zona glomerulosa thickness   [µm]  adr_glome_width BXD w/par 65 both 7-10wks* N=3 2010
    DiCurzio1 36609 histopathology (none) adrenal cortex zona intermedia thickness   [µm]  adr_inter_width BXD w/par 65 both 7-10wks* N=3 2010
    DiCurzio1 36610 histopathology (none) adrenal cortex zona fasciculata thickness   [µm]  adr_fasci_width BXD w/par 65 both 7-10wks* N=3 2010
    DiCurzio1 36611 histopathology (none) adrenal cortex zona reticularis thickness   [µm]  adr_retic_width BXD w/par 65 both 7-10wks* N=3 2010
    DiCurzio1 36612 histopathology (none) adrenal cortex X-zone thickness   [µm]  adr_Xzone_width BXD w/par 65 both 7-10wks* N=3 2010
    DiCurzio1 36614 histopathology (none) presence of X-zone (0=no; 1=yes)   [score]  Xzone_presence BXD w/par 66 both 7-10wks* N=4 2010
    DiCurzio1 36615 histopathology (none) presence of lipoid structures in females (0=none; 1=outside X-zone; 2=within X-zone)   [score]  lipoid_presence BXD w/par 66 f 7-10wks* N=4 2010
Dorward1 16301 histopathology (none) presence of ovarian granulosa cell tumor (0=normal 1=tumor)   [designation]  GC-tumor QTL population f 8wks N=162 2005
Farmer1 11301 histopathology (none) severity of lesions in cecum   [score]  CecumSeverity QTL population both 6wks N=206 2001
Farmer1 11302 histopathology (none) hyperplasia of cecum   [score]  CecumHyperplasia QTL population both 6wks N=206 2001
Farmer1 11303 histopathology (none) ulceration in cecum   [score]  CecumUlceration QTL population both 6wks N=206 2001
Farmer1 11304 histopathology (none) percentage of cecum damaged area   [%]  CecumDA QTL population both 6wks N=206 2001
Farmer1 11305 histopathology (none) sum of cecum severity, hyperplasia, ulceration and damaged area scores   [score]  CecumTotalScore QTL population both 6wks N=206 2001
Farmer1 11306 histopathology (none) percentage of proximal colon damaged area   [%]  ProxDA QTL population both 6wks N=206 2001
Farmer1 11307 histopathology (none) severity of lesions in proximal colon   [score]  ProxSeverity QTL population both 6wks N=206 2001
Farmer1 11308 histopathology (none) hyperplasia of proximal colon   [score]  ProxHyperplasia QTL population both 6wks N=206 2001
Farmer1 11309 histopathology (none) ulceration in proximal colon   [score]  ProxUlceration QTL population both 6wks N=206 2001
Farmer1 11310 histopathology (none) percentage of damaged area in mid colon   [%]  MidDA QTL population both 6wks N=206 2001
Farmer1 11311 histopathology (none) severity of lesions in mid colon   [score]  MidSeverity QTL population both 6wks N=206 2001
Farmer1 11312 histopathology (none) hyperplasia of mid colon   [score]  MidHyperplasia QTL population both 6wks N=206 2001
Farmer1 11313 histopathology (none) ulcers and crypts frequency score   [score]  MidUlceration QTL population both 6wks N=206 2001
Farmer1 11314 histopathology (none) percentage of damaged area in distal colon   [%]  DistalDA QTL population both 6wks N=206 2001
Farmer1 11315 histopathology (none) severity of lesions in distal colon   [score]  DistalSeverity QTL population both 6wks N=206 2001
Farmer1 11316 histopathology (none) hyperplasia of distal colon   [score]  DistalHyperplasia QTL population both 6wks N=206 2001
Farmer1 11317 histopathology (none) ulceration in distal colon   [score]  DistalUlceration QTL population both 6wks N=206 2001
Farmer1 11318 histopathology (none) proximal colon score   [score]  ProximalColon QTL population both 6wks N=206 2001
Farmer1 11319 histopathology (none) middle colon score   [score]  MiddleColon QTL population both 6wks N=206 2001
Farmer1 11320 histopathology (none) distal colon score   [score]  DistalColon QTL population both 6wks N=206 2001
Farmer1 11321 histopathology (none) total score   [score]  ColonTotalScore QTL population both 6wks N=206 2001
    Ferris1 47607 histopathology influenza A (H1N1) virus virus-induced airway inflammation, day 4 post-infection (score 0-3)   [score]  airway_inflam CC pre w/par 161 f 8-16wks N=1 2012
    Ferris1 47608 histopathology influenza A (H1N1) virus virus-induced airway neutrophils, day 4 post-infection (score 0-3)   [score]  airway_neut CC pre w/par 140 f 8-16wks N=1 2012
    Ferris1 47609 histopathology influenza A (H1N1) virus virus-induced airway damage, day 4 post-infection (score 0-3)   [score]  airway_damage CC pre w/par 160 f 8-16wks N=1 2012
    Ferris1 47610 histopathology influenza A (H1N1) virus virus-induced vascular inflammation (lung), day 4 post-infection (score 0-3)   [score]  vascular_inflam CC pre w/par 161 f 8-16wks N=1 2012
    Ferris1 47611 histopathology influenza A (H1N1) virus virus-induced alveolar inflammation, day 4 post-infection (score 0-3)   [score]  alveolar_inflam CC pre w/par 161 f 8-16wks N=1 2012
    Ferris1 47612 histopathology influenza A (H1N1) virus virus-induced alveolar damage, day 4 post-infection (score 0-3)   [score]  alveolar_damage CC pre w/par 161 f 8-16wks N=1 2012
    Ferris1 47613 histopathology influenza A (H1N1) virus virus-induced pulmonary edema, day 4 post-infection (score 0-3)   [score]  pulmonary_edema CC pre w/par 138 f 8-16wks N=1 2012
    Graubert1 11616 histopathology ENU lung adenoma frequency rate   [score]     control    ENU inbred 20 both 13-68wks N=6 2006
    Graubert1 11617 histopathology ENU lung carcinoma frequency rate   [score]     control    ENU inbred 20 both 13-68wks N=6 2006
    Graubert1 11618 histopathology ENU lymphoid tumor frequency rate   [score]     control    ENU inbred 20 both 13-68wks N=6 2006
    Graubert1 11619 histopathology ENU myeloid tumor frequency rate   [score]     control    ENU inbred 20 both 13-68wks N=6 2006
    Graubert1 11620 histopathology ENU gastrointestinal (GI) tumor frequency rate   [score]     control    ENU inbred 20 both 13-68wks N=6 2006
Guay-Woodford1 10704 histopathology (none) renal cystic disease severity   [score]  severity QTL population f 2wks N=144 2000
    Harrill1 39541 histopathology isoniazid lymphohistiocytic, portal, multifocal infiltrate   [score]     control    isoniazid inbred 34 f 8-10wks N=4 2011
    Harrill1 39546 histopathology isoniazid hepatocytic cytoplasmic, microvesiculation, multifocal   [score]     control    isoniazid inbred 34 f 8-10wks N=4 2011
    Harrill1 39551 histopathology isoniazid hepatocytic cytoplasmic, microvesiculation, diffuse   [score]     control    isoniazid inbred 34 f 8-10wks N=4 2011
    Harrill1 39556 histopathology isoniazid hepatocytic hypertrophy, panlobular, diffuse   [score]     control    isoniazid inbred 34 f 8-10wks N=4 2011
    Haston1 48802 histopathology radiation percentage of lung surface covered by fibrotic scar   [%]  fibrosis inbred 20 both 15-36wks N=6 2012
    Haston1 48806 histopathology radiation average number of mast cells per mm2 of lung tissue   [n]  mast_cells inbred 19 both 15-36wks N=6 2012
    Haston1 48807 histopathology radiation inflammation index (0=no alveolitis, 6=severe alveolitis)   [score]  alveolitis inbred 20 both 15-36wks N=7 2012
    Hillebrands1 51101 histopathology (none) number of perivascular immune cell clusters per renal cross-section   [n]  clusternum inbred 23 both 90wks N=7 2014
    Hillebrands1 51102 histopathology (none) relative size of perivascular immune cell clusters   [%]  clustersize inbred 20 both 90wks N=7 2014
    Hunter1 6004 histopathology (none) mammary tumor latency, days after birth   [d]  tum_lat MMTV PyVT transgenic 28 f N=18 1998
    Hunter1 6005 histopathology (none) tumor burden (body weight at sacrifice minus body weight at diagnosis of primary tumor)   [g]  tum_burd MMTV PyVT transgenic 28 f N=18 1998
    Hunter1 6006 histopathology (none) number of pulmonary metastases   [n]  mets MMTV PyVT transgenic 28 f N=19 1998
    Hunter1 6007 histopathology (none) area of pulmonary metastases (x 103)   [µm2]  met_area MMTV PyVT transgenic 28 f N=14 1998
    Hunter1 6008 histopathology (none) total lung area (x 103)   [µm2]  tot_area MMTV PyVT transgenic 28 f N=14 1998
    Hunter1 6009 histopathology (none) number of pulmonary metastases per total lung area (x 10-9)   [n/µm2]  ratio_mta MMTV PyVT transgenic 28 f N=14 1998
    Hunter1 6010 histopathology (none) area of pulmonary metastases per number of metastases   [µm2/n]  met_size MMTV PyVT transgenic 28 f N=14 1998
    Hunter1 6011 histopathology (none) area of pulmonary metastases per total lung area   [ratio]  ratio_ata MMTV PyVT transgenic 28 f N=14 1998
Ishimori1 14009 histopathology high-fat diet fatty streak aortic lesions (0=absent, 1=present)   [score]  aortic_lesion_presence QTL population f 20wks N=294 2004
Ishimori1 14010 histopathology high-fat diet fatty streak aortic lesion size   [µm2]  aortic_lesion QTL population f 20wks N=294 2004
Ishimori1 14011 histopathology high-fat diet fatty streak aortic lesion size, log transformed   [log(µm2)]  aortic_lesion_log QTL population f 20wks N=294 2004
    Klaassen1 16401 histopathology cadmium Cd-induced toxicity to testis   [designation]  testis inbred m 8wks 2001
    Klaassen1 16402 histopathology cadmium Cd-induced toxicity to liver   [designation]  liver inbred m 8wks 2001
    Klaassen1 16403 histopathology cadmium Cd-induced toxicity to trigeminal ganglia   [designation]  ganglia inbred m 8wks 2001
    Korstanje2 51001 histopathology (none) percent of glomeruli exhibiting mesangial matrix expansion   [%]     6mo    12mo    20mo inbred 7 m N=6 2013
Leiter2 24003 histopathology (none) combination score of age at type 1 diabetes onset, and insulitis severity / extent (see excel file)   [score]  Insulities_TimeOnset QTL population f 14-40wks N=310 2009
Leiter2 24004 histopathology (none) insulitis severity / extent score (0-4, see excel file)   [score]  Insulitis QTL population f 14-40wks N=310 2009
Leiter2 24005 histopathology (none) group mice by insulitis score (0-3, see excel file)   [score]  GroupInsulitis_Diabetes QTL population f 14-40wks N=310 2009
Li1 21008 histopathology western diet carotid atheroclerotic lesion area size (the average of 5 largest sections)   [µm2/section]  Carotid_lesion-LGMax QTL population f 12wks N=241 2008
Lyons1 13002 histopathology high-fat diet gallstones, presence (score 0=absent, 1=present)   [score]  gallstone_presence QTL population m 16-18wks N=278 2003
Lyons1 13003 histopathology high-fat diet gallstones, screening (score 0=absent, 1=present, 2=solid gallstones)   [score]  gallstone_score QTL population m 16-18wks N=278 2003
Lyons1 13004 histopathology high-fat diet number of gallstones   [n]  gallstone_count QTL population m 16-18wks N=278 2003
Lyons1 13005 histopathology high-fat diet weight of gallstones   [mg]  gallstone_weight QTL population m 16-18wks N=278 2003
Lyons1 13006 histopathology high-fat diet sandy gallstones (score 0=absence, 1-4=severity)   [score]  gallstone_sandy QTL population m 16-18wks N=278 2003
Lyons1 13007 histopathology high-fat diet solid gallstones (score 0=absence, 1-4=severity)   [score]  gallstone_solid QTL population m 16-18wks N=278 2003
Lyons1 13008 histopathology high-fat diet cholesterol monohydrate crystals, aggregates (score 0=absence, 1-4=severity)   [score]  ChMC_agg QTL population m 16-18wks N=278 2003
Lyons1 13009 histopathology high-fat diet cholesterol monohydrate crystals (score 0=absence, 1-4=severity)   [score]  ChMC_ind QTL population m 16-18wks N=278 2003
Lyons2 13104 histopathology high-fat diet gallbladder, mucin (score 0-4)   [score]  gallbladder_mucin QTL population m 16-18wks N=277 2003
Lyons2 13105 histopathology high-fat diet gallbladder bile characteristics (score 0=no crystals, 1=crystals present, 2=solid or sandy gallstones present)   [score]  bile_score QTL population m 16-18wks N=277 2003
Lyons2 13106 histopathology high-fat diet cholesterol monohydrate crystals (score 0=absent, 1-4=increasing severity)   [score]  gallstone_crystals QTL population m 16-18wks N=277 2003
Lyons2 13107 histopathology high-fat diet sandy gallstones (score 0=absence, 1-4=severity)   [score]  gallstone_sandy QTL population m 16-18wks N=277 2003
Lyons2 13108 histopathology high-fat diet solid gallstones (score 0=absence, 1-5=severity)   [score]  gallstone_solid QTL population m 16-18wks N=277 2003
Lyons2 13109 histopathology high-fat diet number of solid gallstones   [n]  gallstone_count QTL population m 16-18wks N=277 2003
Lyons2 13110 histopathology high-fat diet weight of solid gallstones   [mg]  gallstone_weight QTL population m 16-18wks N=277 2003
Lyons2 13114 histopathology high-fat diet solid gallstones, presence (score 0=absent, 1=present)   [score]  Solid QTL population m 16-18wks N=277 2003
Lyons3 14601 histopathology high-fat diet weight of gallstones   [mg]  GS_wt QTL population m 14-20wks N=330 2004
Lyons3 14602 histopathology high-fat diet number of gallstones   [n]  GS_no QTL population m 14-20wks N=330 2004
Lyons3 14603 histopathology high-fat diet gallstone score (score 0=absent, 1=crystals only, 2=sandy or solid gallstones)   [score]  Score_1 QTL population m 14-20wks N=330 2004
Lyons3 14604 histopathology high-fat diet cholesterol monohydrate crystals, aggregates (score 0=absence, 1-4=severity)   [score]  AggChM QTL population m 14-20wks N=330 2004
Lyons3 14605 histopathology high-fat diet solid gallstones (score 0=absence, 4=severity)   [score]  Solid QTL population m 14-20wks N=330 2004
Lyons3 14606 histopathology high-fat diet sandy gallstones (score 0=absence, 1-4=severity)   [score]  Sandy QTL population m 14-20wks N=330 2004
Lyons3 14607 histopathology high-fat diet gallbladder mucin accumulation (score 0-3) 0=no mucin;1-3= mucin accumulation severity   [score]  Mucin QTL population m 14-20wks N=330 2004
Lyons4 16601 histopathology high-fat diet gallstones, presence (score 0=absent, 1=present)   [score]  gallstone_presence QTL population both 24-26wks N=256 2005
Lyons4 16602 histopathology high-fat diet gallstones, screening (score 0=absent, 1=present, 2,3=solid gallstones)   [score]  gallstone_score QTL population both 24-26wks N=256 2005
Lyons4 16603 histopathology high-fat diet gallstone weight   [g]  gallstone_weight QTL population both 24-26wks N=256 2005
Lyons4 16604 histopathology high-fat diet gallstone weight, log transformed   [log(g)]  gallstone_weight_log QTL population both 24-26wks N=256 2005
Maeda1 60301 histopathology (none) aortic lesion size at root, square root transformed   [µm2]  Sqrt_Root QTL population both 18-20wks N=116 2017
Maeda1 60302 histopathology (none) lesion size at aortic arch, square root transformed   [µm2]  Sqr_Area1 QTL population both 18-20wks N=116 2017
Maeda1 60303 histopathology (none) lesion size at innominate artery, square root transformed   [µm2]  Sqr_Area2 QTL population both 18-20wks N=116 2017
Maeda1 60304 histopathology (none) lesion size at left common carotid artery, square root transformed   [µm2]  Sqr_Area3 QTL population both 18-20wks N=116 2017
Maeda1 60305 histopathology (none) lesion size at subclavian artery plus upper wall, square root transformed   [µm2]  Sqr_Area4 QTL population both 18-20wks N=116 2017
Mahler1 12102 histopathology (none) cecum assessment, first Principal Component  CecumPC1 QTL population both 6wks N=102 2002
Mahler1 12103 histopathology (none) proximal colon assessment, first Principal Component  ProxPC1 QTL population both 6wks N=102 2002
Mahler1 12104 histopathology (none) middle colon assessment, first Principal Component  MidPC1 QTL population both 6wks N=102 2002
Mahler1 12105 histopathology (none) distal colon assessment, first Principal Component  DistPC1 QTL population both 6wks N=102 2002
Mahler1 12106 histopathology (none) ulceration (score 0-4, increasing severity), first Principal Component  Ulceration-PC1 QTL population both 6wks N=102 2002
Mahler1 12107 histopathology (none) ulceration (score 0-4, increasing severity), second Principal Component  Ulceration-PC2 QTL population both 6wks N=102 2002
    Marchuk1 45001 histopathology (none) infarct volume following surgically-induced focal cerebral ischemia   [mm3]  infarct_vol inbred 16 both 11-13wks N=4 2009
Mathews1 13401 histopathology (none) Clinical T1DM accompanied by end-stage insulitis before necropsy (score 0=non-diabetes, 1=diabetes)   [score]  IDDM QTL population f 8-40wks N=120 2003
Mathews1 13402 histopathology (none) severity of diabetes (score 0=non-diabetes, 1=diabetes, 2=severe diabetes)   [score]  IDDM_VS_HI QTL population f 8-40wks N=120 2003
Mathews1 13403 histopathology (none) Clinical T1DM accompanied by end-stage insulitis diagnosed at necropsy (score 0=non-diabetes, 1=diabetes)   [score]  IDM QTL population f 8-40wks N=120 2003
Mrug1 17501 histopathology (none) mean of biliary duct number   [n]  mean_BDN QTL population both 10d N=230 2005
Mrug1 17502 histopathology (none) mean of log( biliary duct number)   [log(n)]  mean_logBDN QTL population both 1wk N=230 2005
Mrug1 17503 histopathology (none) cholangitis severity (score 0-4, increasing severity) 0 = no/minimal inflammation, 4=severe and extensive cholangiohepatitis   [score]  Cholangitis QTL population both 10d N=230 2005
    Odet1 53721 histopathology (none) mean seminiferous tubule radius (transverse section)   [µm]  seminif_radius inbred w/CC8 8 m 10-66wks N=26 2015
    Odet1 53722 histopathology (none) seminiferious epithelium length (transverse section)   [cm]  seminif_length inbred w/CC8 8 m 10-66wks N=26 2015
    Odet1 53723 histopathology (none) number of seminiferous tubules (transverse section)   [n]  seminif_count inbred w/CC8 8 m 10-66wks N=26 2015
    Odet1 53724 histopathology (none) number of seminiferous tubules with vacuoles (transverse section)   [n]  seminif_vacuoles inbred w/CC8 8 m 10-66wks N=26 2015
    Odet1 53725 histopathology (none) number of seminiferous tubules with many vacuoles (transverse section)   [n]  seminif_many_vacuoles inbred w/CC8 8 m 10-66wks N=26 2015
    Odet1 53726 histopathology (none) number of seminiferous tubules with germ cell loss (transverse section)   [n]  seminif_germ_loss inbred w/CC8 8 m 10-66wks N=18 2015
    Odet1 53727 histopathology (none) number of seminiferous tubules with abnormal germ cells (transverse section)   [n]  seminif_germ_abnormal inbred w/CC8 8 m 10-66wks N=26 2015
    Odet1 53728 histopathology (none) number of seminiferous tubules with germ cell sloughing (transverse section)   [n]  seminif_germ_slough inbred w/CC8 8 m 10-66wks N=26 2015
    Odet1 53741 histopathology (none) percentage of sperm with normal morphology   [%]  sperm_normal inbred w/CC8 8 m 10-66wks N=14 2015
    Odet1 53742 histopathology (none) percentage of sperm with abnormal head shape   [%]  sperm_abnormal_head inbred w/CC8 8 m 10-66wks N=14 2015
    Odet1 53743 histopathology (none) percentage of sperm with abnormal tail bending   [%]  sperm_abnormal_tail inbred w/CC8 8 m 10-66wks N=14 2015
    Odet1 53744 histopathology (none) percentage of sperm with broken tails   [%]  sperm_broken_tail inbred w/CC8 8 m 10-66wks N=14 2015
    Paigen1 2909 histopathology high-fat diet mucin (score: 0-4)   [score]  mucin inbred 43 both 15-19wks N=9 2000
    Paigen1 2910 histopathology high-fat diet arc (score: 0-4)   [score]  arc inbred 43 both 15-19wks N=9 2000
    Paigen1 2911 histopathology high-fat diet filaments (score: 0-4)   [score]  filaments inbred 43 both 15-19wks N=9 2000
    Paigen1 2912 histopathology high-fat diet small liquid crystals (score: 0-4)   [score]  smallLC inbred 43 both 15-19wks N=9 2000
    Paigen1 2913 histopathology high-fat diet aggregated liquid crystals (score: 0-4)   [score]  agLC inbred 43 both 15-19wks N=9 2000
    Paigen1 2914 histopathology high-fat diet fused liquid crystals (score: 0-4)   [score]  fusedLC inbred 43 both 15-19wks N=9 2000
    Paigen1 2915 histopathology high-fat diet cholesterol monohydrate crystals (score: 0-4)   [score]  ChMC inbred 43 both 15-19wks N=9 2000
    Paigen1 2916 histopathology high-fat diet number of sandy stones   [n]  sandysto inbred 43 both 15-19wks N=9 2000
    Paigen1 2917 histopathology high-fat diet number of true gallstones   [n]  gs inbred 43 both 15-19wks N=9 2000
    Paigen1 2918 histopathology high-fat diet number of sandy plus true stones   [n]  nstones inbred 43 both 15-19wks N=9 2000
    Paigen1 2919 histopathology high-fat diet presence of stones (score: 1=present, 0=absent)   [score]  st_pres inbred 43 both 15-19wks N=9 2000
    Paigen1 2930 histopathology high-fat diet microvacuoles (score: 0-4)   [score]  microvacs inbred 43 both 15-19wks N=3 2000
    Paigen1 2931 histopathology high-fat diet macrovacuoles (score: 0-4)   [score]  macrovacs inbred 43 both 15-19wks N=3 2000
    Paigen1 2932 histopathology high-fat diet inflammation (score: 0-4)   [score]  inflammation inbred 43 both 15-19wks N=3 2000
    Paigen1 2936 histopathology high-fat diet fatty streak aortic lesion size   [µm2]  aortic_lesion inbred 44 both 15-19wks N=8 2000
    Paigen2 9924 histopathology high-fat diet fatty streak aortic lesion size   [µm2]  aortic_lesion inbred w/CC7 42 both 25-27wks N=9 2002
    Paigen3 2809 histopathology high-fat diet mucin (score: 0-4)   [score]  mucin obesity mutants 7 both 15-19wks N=8 2000
    Paigen3 2810 histopathology high-fat diet arc (score: 0-4)   [score]  arc obesity mutants 7 both 15-19wks N=8 2000
    Paigen3 2811 histopathology high-fat diet filaments (score: 0-4)   [score]  filaments obesity mutants 7 both 15-19wks N=8 2000
    Paigen3 2812 histopathology high-fat diet small liquid crystals (score: 0-4)   [score]  smallLC obesity mutants 7 both 15-19wks N=8 2000
    Paigen3 2813 histopathology high-fat diet aggregated liquid crystals (score: 0-4)   [score]  agLC obesity mutants 7 both 15-19wks N=8 2000
    Paigen3 2814 histopathology high-fat diet fused liquid crystals (score: 0-4)   [score]  fusedLC obesity mutants 7 both 15-19wks N=8 2000
    Paigen3 2815 histopathology high-fat diet cholesterol monohydrate crystals (score: 0-4)   [score]  ChMC obesity mutants 7 both 15-19wks N=8 2000
    Paigen3 2816 histopathology high-fat diet number of sandy stones   [n]  sandysto obesity mutants 7 both 15-19wks N=8 2000
    Paigen3 2817 histopathology high-fat diet number of true gallstones   [n]  gs obesity mutants 7 both 15-19wks N=8 2000
    Paigen3 2818 histopathology high-fat diet number of sandy plus true stones   [n]  nstones obesity mutants 7 both 15-19wks N=8 2000
    Paigen3 2819 histopathology high-fat diet presence of stones (score: 1=present, 0=absent)   [score]  st_pres obesity mutants 8 both 15-19wks N=19 2000
    Paigen3 2830 histopathology high-fat diet microvacuoles (score: 0-4)   [score]  microvacs obesity mutants 7 both 15-19wks N=3 2000
    Paigen3 2831 histopathology high-fat diet macrovacuoles (score: 0-4)   [score]  macrovacs obesity mutants 7 both 15-19wks N=3 2000
    Paigen3 2832 histopathology high-fat diet inflammation (score: 0-4)   [score]  inflammation obesity mutants 7 both 15-19wks N=3 2000
    Paigen3 2836 histopathology high-fat diet fatty streak aortic lesion size   [µm2]  aortic_lesion obesity mutants 7 both 15-19wks N=8 2000
    Poon1 47501 histopathology (none) BrdU+ cells of rostral migratory stream   [n/mm]     3mo    12mo    18mo inbred 9 both N=3 2013
Reifsnyder2 17601 histopathology (none) the week of clinical diabetes onset   [n]  Onset QTL population f 12-40wks N=185 2005
Reifsnyder2 17602 histopathology (none) insulitis score of diabetes-free mice, from 0.002 (virtually no insulitis) to 1.0 (incipient diabetic)  Insulitis_Index QTL population f 12-40wks N=185 2005
Reifsnyder2 17603 histopathology (none) first principal component of age at diabetes onset and severity/extent of insulitis  Prin1 QTL population f 12-40wks N=185 2005
Reifsnyder2 17604 histopathology (none) second principal component of age at diabetes onset and severity / extent of insulitis  Prin2 QTL population f 12-40wks N=185 2005
    Rosen1 47801 histopathology (none) corpus callosum area   [mm2]  corpus_callosum BXD w/par 76 both various N=2 2012
    Rosen1 47802 histopathology (none) corpus callosum area (adjusted)   [mm2]  corpus_callosum_adj BXD w/par 76 both various N=2 2012
    Rosen2 47901 histopathology (none) lateral septum volume   [mm3]  lateral_septum BXD w/par 71 both various N=3 2012
    Rosen2 47902 histopathology (none) lateral septum volume (adjusted)   [mm3]  lateral_septum_adj BXD w/par 71 both various N=3 2012
    Rusyn5 43013 histopathology high-fat diet and ethanol liver steatosis (0-4)   [score]     high-fat only    high-fat and ethanol inbred 14 m 8-14wks N=3 2011
    Rusyn5 43015 histopathology high-fat diet and ethanol liver inflammation (0-2)   [score]     high-fat only    high-fat and ethanol inbred 14 m 8-14wks N=3 2011
    Rusyn5 43017 histopathology high-fat diet and ethanol liver necrosis (0-2)   [score]     high-fat only    high-fat and ethanol inbred 14 m 8-14wks N=3 2011
    Rusyn5 43019 histopathology high-fat diet and ethanol total liver histopathology (0-8)   [score]     high-fat only    high-fat and ethanol inbred 14 m 8-14wks N=3 2011
    Rusyn6 51214 histopathology trichloroethylene BrdU-positive nuclei in liver (hepatocellular proliferation), relative to control group   [%]  BrdU_liver_tce inbred 7 m 6-7wks N=3 2014
    Rusyn6 51254 histopathology trichloroethylene BrdU-positive nuclei in kidney (proximal tubule cell proliferation), relative to control group   [%]  BrdU_kidney_tce inbred 7 m 6-7wks N=3 2014
    Rusyn6 51255 histopathology trichloroethylene kidney injury molecule 1 (KIM-1) positive proximal tubules   [%]     control    TCE inbred 7 m 6-7wks N=4 2014
    Sandell1 49802 histopathology (none) articular cartilage wound healing at 12 wks post-injury   [score]  articular_12 LGXSM w/par 14 both 20wks N=6 2012
    Sandell1 49803 histopathology (none) articular cartilage wound healing at 16 wks post-injury   [score]  articular_16 LGXSM w/par 10 both 24wks N=4 2012
Su2 24506 histopathology high-fat diet aortic lesion size  Lesion QTL population f 14wks N=277 2009
Su2 24507 histopathology high-fat diet aortic lesion size, log transformed  LogLesion QTL population f 14wks N=277 2009
Sundberg2 13501 histopathology (none) Alopecia areata diagnosis (score 0=no alopecia, 1=alopecia)   [score]  alopecia_score QTL population both 1yr N=184 2003
    Threadgill1 19404 histopathology acetaminophen necrosis   [%]     control    post-Rx mg/kg:    100    200    300 inbred w/CC7 37 m 8-17wks N=3 2005
    Threadgill2 39603 histopathology acetaminophen liver necrosis score   [%]  liver_necrosis inbred 5 m 6-8wks N=5 2005
    Threadgill2 39604 histopathology acetaminophen percent nitrotyrosine staining (marker of hepatocyte injury)   [%]  pct_nitrotyrosine inbred 5 m 6-8wks N=5 2005
    Wahlsten1 10806 histopathology (none) length of corpus callosum at mid-sagittal plane   [mm]  cc_length inbred 21 both 12wks N=10 2003
    Wahlsten1 10807 histopathology (none) length of hippocampal commissure at mid-sagittal plane   [mm]  hc_length inbred 21 both 12wks N=10 2003
    Wahlsten1 10808 histopathology (none) length of anterior commissure at mid-sagittal plane   [mm]  ac_length inbred 21 both 12wks N=10 2003
    Wahlsten1 10809 histopathology (none) cross-sectional area of corpus callosum at midplane   [mm2]  cc_area inbred 21 both 12wks N=10 2003
    Wahlsten1 10810 histopathology (none) cross-sectional area of hippocampal commissure at midplane   [mm2]  hc_area inbred 21 both 12wks N=10 2003
    Wahlsten1 10811 histopathology (none) cross-sectional area of anterior commissure at midplane   [mm2]  ac_area inbred 21 both 12wks N=10 2003
    Wahlsten1 10812 histopathology (none) corpus callosum index (0=absent, 1=normal, <0.65 is abnormal)   [score]  cc_index inbred 21 both 12wks N=10 2003
    Wahlsten1 10813 histopathology (none) hippocampal commissure index (0=absent, 1=normal, <0.5 is abnormal)   [score]  hc_index inbred 21 both 12wks N=10 2003
    Wahlsten1 10814 histopathology (none) anterior commissure index (0=absent, 1=normal, <.60 is abnormal)   [score]  ac_index inbred 21 both 12wks N=10 2003
Wang1 13717 histopathology high-fat diet fatty streak aortic lesion size   [µm2]  aortic_lesion QTL population f 23wks N=100 2003
Wittenburg1 12605 histopathology high-fat diet gallbladder, mucin (score 0-4), log transformed   [score]  gallbladder_mucin_log QTL population both 18-20wks N=131 2002
Wittenburg1 12606 histopathology high-fat diet gallstones, presence (score 0=absent, 1=present)   [score]  gallstone_presence QTL population both 18-20wks N=131 2002
Wittenburg1 12607 histopathology high-fat diet gallstones, number   [n]  gallstone_count QTL population both 18-20wks N=131 2002
Wittenburg1 12608 histopathology high-fat diet weight of solid gallstones   [mg]  gallstone_wt QTL population both 18-20wks N=131 2002
Wittenburg1 12609 histopathology high-fat diet gallstone severity (score 0=absent, 1=crystals, 2=stones)   [score]  gallstone_score QTL population both 18-20wks N=131 2002
Wittenburg1 12610 histopathology high-fat diet gallstones volume  gallstone_vol QTL population both 18-20wks N=131 2002
Wittenburg2 13806 histopathology high-fat diet gallbladder, mucin (score 0-5)   [score]  gallbladder_mucin QTL population both 14-16wks N=153 2003
Wittenburg2 13807 histopathology high-fat diet gallstones, presence (score 0=absent, 1=present)   [score]  gallstone_presence QTL population both 14-16wks N=153 2003
Wittenburg2 13808 histopathology high-fat diet gallstones, screening (score 0=absent, 1=present, 2=solid gallstones)   [score]  gallstone_screen QTL population both 14-16wks N=153 2003
Wittenburg2 13809 histopathology high-fat diet number of solid gallstones   [n]  gallstone_count QTL population both 14-16wks N=153 2003
Wittenburg2 13810 histopathology high-fat diet weight of solid gallstones   [mg]  gallstone_wt QTL population both 14-16wks N=153 2003
Wittenburg2 13811 histopathology high-fat diet weight of solid gallstones, log transformed   [log(mg)]  gallstone_wt_log QTL population both 14-16wks N=153 2003
Wittenburg2 13812 histopathology high-fat diet weight of solid gallstones ([mg] + 1), log10 transformed   [log(mg)]  gallstone_wt_log10 QTL population both 14-16wks N=153 2003
Wittenburg2 13813 histopathology high-fat diet weight of solid gallstones, square root   [sqrt(mg)]  gallstone_wt_sqr QTL population both 14-16wks N=153 2003
Wittenburg2 13814 histopathology high-fat diet gallstones, presence of sandy stones (score 0=absent, 1=present)   [score]  gallstone_sandy QTL population both 14-16wks N=153 2003
Wittenburg2 13815 histopathology high-fat diet cholesterol monohydrate crystals (score 0-5)   [score]  gallstone_crystals QTL population both 14-16wks N=153 2003
Wittenburg2 13816 histopathology high-fat diet gallstone severity (score 0-3)   [score]  gallstone_score QTL population both 14-16wks N=153 2003
Wittenburg3 18205 histopathology high-fat diet gallstones, presence (score 0=absent, 1=present)   [score]  gallstone_presence QTL population both 14-16wks N=162 2005
Wittenburg3 18206 histopathology high-fat diet sandy gallstones, presence (score 0=absent, 1=present)   [score]  gallstone_sandy QTL population both 14-16wks N=162 2005
Wittenburg3 18207 histopathology high-fat diet solid gallstones, presence (score 0=absent, 1=present)   [score]  gallstone_solid QTL population both 14-16wks N=162 2005
Wittenburg3 18208 histopathology high-fat diet number of gallstones   [n]  gallstone_count QTL population both 14-16wks N=162 2005
Wittenburg3 18209 histopathology high-fat diet gallstone weight   [mg]  gallstone_wt QTL population both 14-16wks N=162 2005
Wittenburg3 18210 histopathology high-fat diet cholesterol monohydrate crystals (score 0=absent, 1-5=severity)   [score]  gallstone_crystals QTL population both 14-16wks N=162 2005
Wittenburg3 18211 histopathology high-fat diet gallbladder, mucin (score 0=absent, 1-5=severity)   [score]  gallbladder_mucin QTL population both 14-16wks N=162 2005
Wittenburg3 18212 histopathology high-fat diet gallstone score (score 0=absent, 1=crystals only, 2=sandy or solid gallstones)   [score]  gallstone_score QTL population both 14-16wks N=162 2005
Wittenburg3 18213 histopathology high-fat diet gallstone severity index (score 0-3, increasing severity)   [score]  gallstone_severity QTL population both 14-16wks N=162 2005
Wittenburg3 18218 histopathology high-fat diet gallstone weight if gallstones present   [mg]  gallstone_wt_if_present QTL population both 14-16wks N=162 2005
Wittenburg3 18219 histopathology high-fat diet gallstones presence score (0=absent, 1=present)  gallstone_present_absent QTL population both 14-16wks N=162 2005
Wittenburg3 18220 histopathology high-fat diet Revised subjective summary score (0-3)  score_new QTL population both 14-16wks N=162 2005
Zhang1 27903 histopathology western diet maximal carotid lesion   [µm2]  Carotid_lesion_max QTL population f 18wks N=266 2012
Zhang1 27904 histopathology western diet maximal lesion, ln transformed  Carotid_lesion_LnMax QTL population f 18wks N=266 2012
Zhang1 27905 histopathology western diet maximal lesion, log transformed  Carotid_lesion_L10Max QTL population f 18wks N=266 2012
Zhang1 27906 histopathology western diet maximal lesion, square root  Carotid_lesion_MasSQ QTL population f 18wks N=266 2012
Zhang1 27907 histopathology western diet average maximal 5 lesion   [µm2/section]  Carotid_lesion_Amax5 QTL population f 18wks N=266 2012
Zhang1 27908 histopathology western diet average maximal 5 lesion, ln transformed  Carotid_lesion_LnAmax5 QTL population f 18wks N=266 2012
Zhang1 27909 histopathology western diet average maximal 5 lesion, log transformed  Carotid_lesion_L10Am5 QTL population f 18wks N=266 2012
Zhang1 27910 histopathology western diet average maximal 5 lesion, square root  Carotid_lesion_Am5sq QTL population f 18wks N=266 2012
Zhang1 27911 histopathology western diet average lesion   [µm2/section]  Carotid_lesion_average QTL population f 18wks N=266 2012
Zhang1 27912 histopathology western diet average lesion, ln transformed  Carotid_lesion_LnAvg QTL population f 18wks N=266 2012
Zhang1 27913 histopathology western diet average lesion, log transformed  Carotid_lesion_L10Avg QTL population f 18wks N=266 2012
Zhang1 27914 histopathology western diet average lesion, square root  Carotid_lesion_AvgSq QTL population f 18wks N=266 2012
Zhang1 27915 histopathology western diet lesion double-checked   [µm2/section]  Carotid_lesion-recheck QTL population f 18wks N=266 2012
Zhang1 27916 histopathology western diet maximal lesion   [µm2]  Aortic_lesion_Max QTL population f 18wks N=266 2012
Zhang1 27917 histopathology western diet average lesion   [µm2/section]  Aortic_lesion_Aveg QTL population f 18wks N=266 2012
Zhang1 27918 histopathology western diet average maximal 5 lesion   [µm2/section]  Aortic_lesion_Amax5 QTL population f 18wks N=266 2012
Zhang1 27919 histopathology western diet average maximal 5 lesion, ln transformed  Aortic_lesion_LnAmax5 QTL population f 18wks N=266 2012
Zhang1 27920 histopathology western diet maximal lesion, square root  Aortic_lesion_Max_Sqrt QTL population f 18wks N=266 2012
Zhang1 27921 histopathology western diet average lesion, square root  Aortic_lesion_Avg_sqrt QTL population f 18wks N=266 2012
Zhang1 27922 histopathology western diet average maximal 5 lesion, square root  Aortic_lesion_Amax5_sqrt QTL population f 18wks N=266 2012
Zhang1 27923 histopathology western diet maximal lesion, ln transformed  Aortic_lesion_Max_LN QTL population f 18wks N=266 2012
Zhang1 27924 histopathology western diet average lesion, ln transformed  Aortic_lesion_Avg_LN QTL population f 18wks N=266 2012
Zhang1 27926 histopathology western diet maximal 10 lesion   [µm2/section]  Aortic_lesion_Max10 QTL population f 18wks N=266 2012
Zhang1 27927 histopathology western diet average lesion, log10 transformed  Aortic_lesion_Aveg_log10 QTL population f 18wks N=266 2012
Zhang1 27946 histopathology western diet total aortic lesion size   [µm2]  Aortic_lesion_Sum QTL population f 18wks N=266 2012
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Other available data sets:
Data set Procedure What's in this data set Strains
Tested
Sex Age Year
Esposito1 histopathology Frequency rates of disorders seen during histopathology survey of various organs. adrenal gland, bladder, heart, intestine, kidney, liver, lung, ovary, pancreas, salivary gland, stomach, testis, thyroid None inbred  (6) both 2013