Phenotype measure:   Wahlsten1   hc_length

ID, description, units MPD:10807   hc_length   length of hippocampal commissure at mid-sagittal plane   [mm]
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 12wks
Procedure histopathology
Ontology mappings

  STRAIN COMPARISON PLOT
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Wahlsten1 - length of hippocampal commissure at mid-sagittal plane



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains20 strains
Mean of the strain means1.52   mm 1.52   mm
Median of the strain means1.59   mm 1.58   mm
SD of the strain means± 0.307 ± 0.270
Coefficient of variation (CV)0.202 0.177
Min–max range of strain means0.514   –   1.91   mm 0.748   –   1.87   mm
Mean sample size per strain9.5   mice 9.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0623 0.0623 3.3151 0.0695
strain 19 31.6017 1.6632 88.4639 < 0.0001
sex:strain 19 0.4991 0.0263 1.3973 0.1247
Residuals 345 6.4865 0.0188


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.44 0.355   10 0.112 0.247 0.532, 1.77 -0.25
129S1/SvImJ m 1.52 0.179   10 0.0565 0.117 1.3, 1.82 -0.01
A/J f 1.41 0.118   8 0.0418 0.0837 1.27, 1.58 -0.35
A/J m 1.34 0.097   10 0.0307 0.0722 1.15, 1.49 -0.68
AKR/J f 1.53 0.0595   9 0.0198 0.039 1.45, 1.62 0.04
AKR/J m 1.47 0.111   8 0.0393 0.0757 1.31, 1.65 -0.2
BALB/cByJ f 1.59 0.164   10 0.052 0.104 1.31, 1.79 0.24
BALB/cByJ m 1.53 0.125   10 0.0397 0.0822 1.38, 1.8 0.02
BTBR T+ Itpr3tf/J f 0.514 0.147   12 0.0424 0.286 0.294, 0.744 -3.27
BTBR T+ Itpr3tf/J m 0.748 0.256   6 0.104 0.341 0.424, 1.11 -2.87
C3H/HeJ f 1.72 0.0853   10 0.027 0.0497 1.58, 1.87 0.66
C3H/HeJ m 1.63 0.0747   8 0.0264 0.0459 1.47, 1.71 0.39
C57BL/6J f 1.7 0.137   8 0.0485 0.0808 1.54, 1.88 0.6
C57BL/6J m 1.78 0.139   10 0.044 0.0782 1.55, 1.98 0.95
C57L/J f 1.64 0.129   10 0.0407 0.0786 1.42, 1.86 0.4
C57L/J m 1.64 0.144   8 0.051 0.0882 1.42, 1.82 0.43
C58/J f 1.67 0.104   9 0.0348 0.0627 1.45, 1.79 0.5
C58/J m 1.69 0.0556   10 0.0176 0.0329 1.61, 1.8 0.61
CAST/EiJ f 1.31 0.101   9 0.0338 0.0773 1.11, 1.43 -0.68
CAST/EiJ m 1.34 0.0968   9 0.0323 0.0721 1.23, 1.46 -0.68
DBA/2J f 1.28 0.116   10 0.0367 0.0906 1.15, 1.47 -0.77
DBA/2J m 1.27 0.0868   8 0.0307 0.0685 1.15, 1.4 -0.94
FVB/NJ f 1.63 0.0774   10 0.0245 0.0476 1.55, 1.79 0.37
FVB/NJ m 1.66 0.077   11 0.0232 0.0465 1.5, 1.76 0.5
MOLF/EiJ f 1.29 0.146   8 0.0515 0.113 1.01, 1.45 -0.74
MOLF/EiJ m 1.31 0.0841   6 0.0343 0.0639 1.18, 1.44 -0.79
NOD/ShiLtJ f 1.82 0.0957   12 0.0276 0.0527 1.65, 1.99 0.99
NOD/ShiLtJ m 1.75 0.138   12 0.0399 0.079 1.49, 1.95 0.84
NZB/BlNJ f 1.54 0.0898   6 0.0367 0.0584 1.42, 1.65 0.07
NZB/BlNJ m 1.49 0.0946   12 0.0273 0.0634 1.3, 1.61 -0.13
PERA/EiJ f 1.17 0.0959   10 0.0303 0.0822 1.03, 1.34 -1.13
PERA/EiJ m 1.17 0.148   12 0.0426 0.127 0.756, 1.36 -1.31
PL/J f 1.91 0.169   12 0.0488 0.0885 1.61, 2.14 1.28
PL/J m 1.87 0.0884   8 0.0313 0.0472 1.81, 2.02 1.28
SJL/J f 1.87 0.151   8 0.0535 0.0809 1.67, 2.02 1.15
SJL/J m 1.82 0.219   12 0.0632 0.12 1.38, 2.13 1.1
SM/J f 1.68 0.0944   14 0.0252 0.0563 1.53, 1.83 0.53
SM/J m 1.76 0.0822   10 0.026 0.0467 1.57, 1.88 0.87
SPRET/EiJ f 1.41 0.0378   5 0.0169 0.0267 1.38, 1.46 -0.35
SWR/J f 1.74 0.11   10 0.0349 0.0633 1.61, 1.94 0.73
SWR/J m 1.69 0.169   10 0.0534 0.1 1.46, 2.01 0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.4362 0.0434 1.5215 1.3509
129S1/SvImJ m 1.524 0.0434 1.6093 1.4387
A/J f 1.4112 0.0485 1.5066 1.3159
A/J m 1.343 0.0434 1.4283 1.2577
AKR/J f 1.5278 0.0457 1.6177 1.4379
AKR/J m 1.4688 0.0485 1.5641 1.3734
BALB/cByJ f 1.589 0.0434 1.6743 1.5037
BALB/cByJ m 1.526 0.0434 1.6113 1.4407
BTBR T+ Itpr3tf/J f 0.5139 0.0396 0.5918 0.4361
BTBR T+ Itpr3tf/J m 0.7485 0.056 0.8586 0.6384
C3H/HeJ f 1.716 0.0434 1.8013 1.6307
C3H/HeJ m 1.6287 0.0485 1.7241 1.5334
C57BL/6J f 1.6987 0.0485 1.7941 1.6034
C57BL/6J m 1.781 0.0434 1.8663 1.6957
C57L/J f 1.638 0.0434 1.7233 1.5527
C57L/J m 1.635 0.0485 1.7304 1.5396
C58/J f 1.6678 0.0457 1.7577 1.5779
C58/J m 1.69 0.0434 1.7753 1.6047
CAST/EiJ f 1.3133 0.0457 1.4032 1.2234
CAST/EiJ m 1.3411 0.0457 1.431 1.2512
DBA/2J f 1.282 0.0434 1.3673 1.1967
DBA/2J m 1.2675 0.0485 1.3629 1.1721
FVB/NJ f 1.628 0.0434 1.7133 1.5427
FVB/NJ m 1.6582 0.0413 1.7395 1.5769
MOLF/EiJ f 1.2875 0.0485 1.3829 1.1921
MOLF/EiJ m 1.315 0.056 1.4251 1.2049
NOD/ShiLtJ f 1.8158 0.0396 1.8937 1.738
NOD/ShiLtJ m 1.75 0.0396 1.8279 1.6721
NZB/BlNJ f 1.5367 0.056 1.6468 1.4266
NZB/BlNJ m 1.4917 0.0396 1.5695 1.4138
PERA/EiJ f 1.167 0.0434 1.2523 1.0817
PERA/EiJ m 1.1663 0.0396 1.2442 1.0885
PL/J f 1.9125 0.0396 1.9904 1.8346
PL/J m 1.8725 0.0485 1.9679 1.7771
SJL/J f 1.8688 0.0485 1.9641 1.7734
SJL/J m 1.8225 0.0396 1.9004 1.7446
SM/J f 1.6757 0.0366 1.7478 1.6036
SM/J m 1.758 0.0434 1.8433 1.6727
SWR/J f 1.744 0.0434 1.8293 1.6587
SWR/J m 1.688 0.0434 1.7733 1.6027


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.4801 0.0307 1.5404 1.4198
A/J both 1.3771 0.0325 1.4411 1.3132
AKR/J both 1.4983 0.0333 1.5638 1.4327
BALB/cByJ both 1.5575 0.0307 1.6178 1.4972
BTBR T+ Itpr3tf/J both 0.6312 0.0343 0.6986 0.5638
C3H/HeJ both 1.6724 0.0325 1.7363 1.6084
C57BL/6J both 1.7399 0.0325 1.8038 1.6759
C57L/J both 1.6365 0.0325 1.7005 1.5725
C58/J both 1.6789 0.0315 1.7408 1.6169
CAST/EiJ both 1.3272 0.0323 1.3908 1.2637
DBA/2J both 1.2747 0.0325 1.3387 1.2108
FVB/NJ both 1.6431 0.03 1.702 1.5842
MOLF/EiJ both 1.3012 0.037 1.3741 1.2284
NOD/ShiLtJ both 1.7829 0.028 1.838 1.7279
NZB/BlNJ both 1.5142 0.0343 1.5816 1.4467
PERA/EiJ both 1.1667 0.0294 1.2244 1.1089
PL/J both 1.8925 0.0313 1.954 1.831
SJL/J both 1.8456 0.0313 1.9072 1.7841
SM/J both 1.7169 0.0284 1.7727 1.661
SWR/J both 1.716 0.0307 1.7763 1.6557




  GWAS USING LINEAR MIXED MODELS