Phenotype measure:   Wahlsten1   cc_length

ID, description, units MPD:10806   cc_length   length of corpus callosum at mid-sagittal plane   [mm]
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 12wks
Procedure histopathology
Ontology mappings

  STRAIN COMPARISON PLOT
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Wahlsten1 - length of corpus callosum at mid-sagittal plane



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains20 strains
Mean of the strain means3.56   mm 3.57   mm
Median of the strain means3.82   mm 3.84   mm
SD of the strain means± 0.927 ± 0.915
Coefficient of variation (CV)0.260 0.257
Min–max range of strain means0   –   4.21   mm 0.0495   –   4.37   mm
Mean sample size per strain9.5   mice 9.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.1876 1.1876 6.0359 0.0145
strain 19 300.1888 15.7994 80.3028 < 0.0001
sex:strain 19 4.9198 0.2589 1.3161 0.1696
Residuals 345 67.878 0.1967


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.27 1.62   10 0.511 0.711 -1.4
129S1/SvImJ m 2.98 1.38   10 0.438 0.464 -0.64
A/J f 3.83 0.153   8 0.054 0.0398 3.6, 4.02 0.29
A/J m 3.86 0.347   10 0.11 0.0901 2.94, 4.12 0.32
AKR/J f 3.77 0.103   9 0.0344 0.0274 3.62, 3.9 0.22
AKR/J m 3.69 0.163   8 0.0576 0.0441 3.4, 3.87 0.13
BALB/cByJ f 3.68 0.674   10 0.213 0.183 1.89, 4.11 0.13
BALB/cByJ m 3.07 1.24   10 0.392 0.404 -0.54
BTBR T+ Itpr3tf/J f 0.0 0.0   12 0.0 0.0 -3.84
BTBR T+ Itpr3tf/J m 0.0495 0.121   6 0.0495 2.45 -3.84
C3H/HeJ f 3.81 0.245   10 0.0774 0.0642 3.45, 4.11 0.27
C3H/HeJ m 3.57 0.267   8 0.0945 0.0748 3.1, 3.91 0.0
C57BL/6J f 4.21 0.111   8 0.0394 0.0265 4.06, 4.39 0.7
C57BL/6J m 4.37 0.12   10 0.0381 0.0275 4.14, 4.52 0.88
C57L/J f 3.99 0.143   10 0.0453 0.0359 3.77, 4.29 0.46
C57L/J m 4.01 0.148   8 0.0524 0.037 3.8, 4.16 0.48
C58/J f 3.82 0.163   9 0.0543 0.0426 3.5, 4.09 0.28
C58/J m 3.82 0.162   10 0.0512 0.0423 3.69, 4.25 0.28
CAST/EiJ f 3.89 0.0842   9 0.0281 0.0216 3.76, 4.04 0.35
CAST/EiJ m 3.93 0.0876   9 0.0292 0.0223 3.8, 4.07 0.4
DBA/2J f 3.58 0.17   10 0.0536 0.0474 3.36, 3.78 0.02
DBA/2J m 3.55 0.211   8 0.0745 0.0594 3.25, 3.87 -0.02
FVB/NJ f 4.08 0.15   10 0.0476 0.0369 3.84, 4.26 0.56
FVB/NJ m 4.11 0.101   11 0.0304 0.0245 3.99, 4.29 0.59
MOLF/EiJ f 3.19 0.078   8 0.0276 0.0244 3.09, 3.31 -0.4
MOLF/EiJ m 3.17 0.122   6 0.0498 0.0384 2.98, 3.28 -0.43
NOD/ShiLtJ f 4.02 0.174   12 0.0504 0.0433 3.79, 4.43 0.49
NOD/ShiLtJ m 3.96 0.254   12 0.0734 0.0642 3.28, 4.25 0.43
NZB/BlNJ f 3.31 0.163   6 0.0664 0.0491 3.09, 3.55 -0.27
NZB/BlNJ m 3.45 0.137   12 0.0395 0.0397 3.25, 3.65 -0.13
PERA/EiJ f 3.33 0.1   10 0.0318 0.0302 3.12, 3.44 -0.25
PERA/EiJ m 3.37 0.13   12 0.0376 0.0386 3.07, 3.53 -0.22
PL/J f 4.18 0.127   12 0.0367 0.0304 3.96, 4.42 0.66
PL/J m 4.14 0.101   8 0.0358 0.0244 4.01, 4.33 0.63
SJL/J f 3.96 0.12   8 0.0424 0.0303 3.73, 4.1 0.43
SJL/J m 4.02 0.234   12 0.0675 0.0582 3.56, 4.41 0.49
SM/J f 4.14 0.248   14 0.0664 0.06 3.32, 4.33 0.62
SM/J m 4.18 0.189   10 0.0599 0.0453 3.89, 4.46 0.67
SPRET/EiJ f 3.74 0.0924   5 0.0413 0.0247 3.62, 3.84 0.19
SWR/J f 4.04 0.139   10 0.044 0.0345 3.74, 4.24 0.51
SWR/J m 4.06 0.238   10 0.0754 0.0588 3.6, 4.32 0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.272 0.1403 2.5479 1.9961
129S1/SvImJ m 2.98 0.1403 3.2559 2.7041
A/J f 3.835 0.1568 4.1434 3.5266
A/J m 3.858 0.1403 4.1339 3.5821
AKR/J f 3.7656 0.1479 4.0564 3.4747
AKR/J m 3.6938 0.1568 4.0022 3.3853
BALB/cByJ f 3.683 0.1403 3.9589 3.4071
BALB/cByJ m 3.074 0.1403 3.3499 2.7981
BTBR T+ Itpr3tf/J f 0.0 0.128 0.2518 -0.2518
BTBR T+ Itpr3tf/J m 0.0495 0.1811 0.4057 -0.3067
C3H/HeJ f 3.812 0.1403 4.0879 3.5361
C3H/HeJ m 3.5737 0.1568 3.8822 3.2653
C57BL/6J f 4.2125 0.1568 4.5209 3.9041
C57BL/6J m 4.374 0.1403 4.6499 4.0981
C57L/J f 3.992 0.1403 4.2679 3.7161
C57L/J m 4.0075 0.1568 4.3159 3.6991
C58/J f 3.8222 0.1479 4.113 3.5314
C58/J m 3.823 0.1403 4.0989 3.5471
CAST/EiJ f 3.8889 0.1479 4.1797 3.5981
CAST/EiJ m 3.9267 0.1479 4.2175 3.6359
DBA/2J f 3.581 0.1403 3.8569 3.3051
DBA/2J m 3.5475 0.1568 3.8559 3.2391
FVB/NJ f 4.083 0.1403 4.3589 3.8071
FVB/NJ m 4.1082 0.1337 4.3712 3.8451
MOLF/EiJ f 3.1937 0.1568 3.5022 2.8853
MOLF/EiJ m 3.1717 0.1811 3.5278 2.8155
NOD/ShiLtJ f 4.025 0.128 4.2768 3.7732
NOD/ShiLtJ m 3.9592 0.128 4.211 3.7073
NZB/BlNJ f 3.3083 0.1811 3.6645 2.9522
NZB/BlNJ m 3.4458 0.128 3.6977 3.194
PERA/EiJ f 3.329 0.1403 3.6049 3.0531
PERA/EiJ m 3.3717 0.128 3.6235 3.1198
PL/J f 4.1842 0.128 4.436 3.9323
PL/J m 4.1362 0.1568 4.4447 3.8278
SJL/J f 3.9588 0.1568 4.2672 3.6503
SJL/J m 4.0208 0.128 4.2727 3.769
SM/J f 4.14 0.1185 4.3732 3.9068
SM/J m 4.179 0.1403 4.4549 3.9031
SWR/J f 4.038 0.1403 4.3139 3.7621
SWR/J m 4.057 0.1403 4.3329 3.7811


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.626 0.0992 2.8211 2.4309
A/J both 3.8465 0.1052 4.0534 3.6396
AKR/J both 3.7297 0.1078 3.9416 3.5177
BALB/cByJ both 3.3785 0.0992 3.5736 3.1834
BTBR T+ Itpr3tf/J both 0.0248 0.1109 0.2429 -0.1934
C3H/HeJ both 3.6929 0.1052 3.8998 3.486
C57BL/6J both 4.2932 0.1052 4.5002 4.0863
C57L/J both 3.9998 0.1052 4.2067 3.7928
C58/J both 3.8226 0.1019 4.023 3.6222
CAST/EiJ both 3.9078 0.1045 4.1134 3.7021
DBA/2J both 3.5642 0.1052 3.7712 3.3573
FVB/NJ both 4.0956 0.0969 4.2862 3.905
MOLF/EiJ both 3.1827 0.1198 3.4183 2.9471
NOD/ShiLtJ both 3.9921 0.0905 4.1702 3.814
NZB/BlNJ both 3.3771 0.1109 3.5952 3.159
PERA/EiJ both 3.3503 0.095 3.5371 3.1636
PL/J both 4.1602 0.1012 4.3593 3.9611
SJL/J both 3.9898 0.1012 4.1889 3.7907
SM/J both 4.1595 0.0918 4.3401 3.9789
SWR/J both 4.0475 0.0992 4.2426 3.8524




  GWAS USING LINEAR MIXED MODELS