Phenotype measure:   Paigen1   arc

ID, description, units MPD:2910   arc   gallbladder, arc (score: 0-4)   [score]   measure
high-fat diet study
Data set, strains Paigen1   inbred   43 strains     sex: both     age: 15-19wks
Procedure histopathology
Ontology mappings

  STRAIN COMPARISON PLOT
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Paigen1 - gallbladder, arc (score: 0-4)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested43 strains42 strains
Mean of the strain means0   score 0   score
Median of the strain means0   score 0   score
SD of the strain means± 0 ± 0
Coefficient of variation (CV)0 0
Min–max range of strain means0   –   0   score 0   –   0   score
Mean sample size per strain8.8   mice 8.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0 0.0
strain 41 0.0 0.0
sex:strain 41 0.0 0.0
Residuals 622 0.0 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   10 0.0 0.0 0.0
129S1/SvImJ m 0.0 0.0   10 0.0 0.0 0.0
A/J f 0.0 0.0   10 0.0 0.0 0.0
A/J m 0.0 0.0   10 0.0 0.0 0.0
AKR/J f 0.0 0.0   9 0.0 0.0 0.0
AKR/J m 0.0 0.0   9 0.0 0.0 0.0
BALB/cJ f 0.0 0.0   10 0.0 0.0 0.0
BALB/cJ m 0.0 0.0   10 0.0 0.0 0.0
BPH/2J f 0.0 0.0   10 0.0 0.0 0.0
BPH/2J m 0.0 0.0   9 0.0 0.0 0.0
BPL/1J f 0.0 0.0   10 0.0 0.0 0.0
BPL/1J m 0.0 0.0   10 0.0 0.0 0.0
BPN/3J f 0.0 0.0   10 0.0 0.0 0.0
BPN/3J m 0.0 0.0   9 0.0 0.0 0.0
BTBR T+ Itpr3tf/J f 0.0 0.0   3 0.0 0.0 0.0
BTBR T+ Itpr3tf/J m 0.0 0.0   10 0.0 0.0 0.0
C3H/HeJ f 0.0 0.0   9 0.0 0.0 0.0
C3H/HeJ m 0.0 0.0   5 0.0 0.0 0.0
C57BL/10J f 0.0 0.0   10 0.0 0.0 0.0
C57BL/10J m 0.0 0.0   10 0.0 0.0 0.0
C57BL/6J f 0.0 0.0   10 0.0 0.0 0.0
C57BL/6J m 0.0 0.0   6 0.0 0.0 0.0
C57BLKS/J f 0.0 0.0   6 0.0 0.0 0.0
C57BLKS/J m 0.0 0.0   5 0.0 0.0 0.0
C57BR/cdJ f 0.0 0.0   9 0.0 0.0 0.0
C57BR/cdJ m 0.0 0.0   10 0.0 0.0 0.0
C57L/J f 0.0 0.0   10 0.0 0.0 0.0
C57L/J m 0.0 0.0   9 0.0 0.0 0.0
C58/J f 0.0 0.0   10 0.0 0.0 0.0
C58/J m 0.0 0.0   10 0.0 0.0 0.0
CAST/EiJ f 0.0 0.0   5 0.0 0.0 0.0
CAST/EiJ m 0.0 0.0   9 0.0 0.0 0.0
CBA/J f 0.0 0.0   9 0.0 0.0 0.0
CBA/J m 0.0 0.0   10 0.0 0.0 0.0
CE/J f 0.0 0.0   9 0.0 0.0 0.0
CE/J m 0.0 0.0   6 0.0 0.0 0.0
CZECHII/EiJ f 0.0 0.0   7 0.0 0.0 0.0
CZECHII/EiJ m 0.0 0.0   7 0.0 0.0 0.0
DBA/1J f 0.0 0.0   10 0.0 0.0 0.0
DBA/1J m 0.0 0.0   8 0.0 0.0 0.0
DBA/2J f 0.0 0.0   10 0.0 0.0 0.0
DBA/2J m 0.0 0.0   9 0.0 0.0 0.0
FVB/NJ f 0.0 0.0   9 0.0 0.0 0.0
FVB/NJ m 0.0 0.0   3 0.0 0.0 0.0
I/LnJ f 0.0 0.0   9 0.0 0.0 0.0
I/LnJ m 0.0 0.0   9 0.0 0.0 0.0
KK/HlJ f 0.0 0.0   8 0.0 0.0 0.0
KK/HlJ m 0.0 0.0   9 0.0 0.0 0.0
LP/J f 0.0 0.0   9 0.0 0.0 0.0
LP/J m 0.0 0.0   9 0.0 0.0 0.0
MOLF/EiJ f 0.0 0.0   9 0.0 0.0 0.0
MOLF/EiJ m 0.0 0.0   9 0.0 0.0 0.0
NOD/ShiLtJ f 0.0 0.0   8 0.0 0.0 0.0
NOD/ShiLtJ m 0.0 0.0   6 0.0 0.0 0.0
NON/ShiLtJ f 0.0 0.0   9 0.0 0.0 0.0
NON/ShiLtJ m 0.0 0.0   9 0.0 0.0 0.0
NZB/BlNJ f 0.0 0.0   9 0.0 0.0 0.0
NZB/BlNJ m 0.0 0.0   9 0.0 0.0 0.0
NZW/LacJ f 0.0 0.0   8 0.0 0.0 0.0
NZW/LacJ m 0.0 0.0   10 0.0 0.0 0.0
PERA/EiJ f 0.0 0.0   8 0.0 0.0 0.0
PERA/EiJ m 0.0 0.0   4 0.0 0.0 0.0
P/J f 0.0 0.0   9 0.0 0.0 0.0
P/J m 0.0 0.0   9 0.0 0.0 0.0
PL/J f 0.0 0.0   10 0.0 0.0 0.0
PL/J m 0.0 0.0   3 0.0 0.0 0.0
RBF/DnJ f 0.0 0.0   9 0.0 0.0 0.0
RBF/DnJ m 0.0 0.0   9 0.0 0.0 0.0
RF/J f 0.0 0.0   10 0.0 0.0 0.0
RF/J m 0.0 0.0   5 0.0 0.0 0.0
RIIIS/J f 0.0 0.0   10 0.0 0.0 0.0
RIIIS/J m 0.0 0.0   9 0.0 0.0 0.0
SEA/GnJ f 0.0 0.0   8 0.0 0.0 0.0
SEA/GnJ m 0.0 0.0   10 0.0 0.0 0.0
SJL/J f 0.0 0.0   10 0.0 0.0 0.0
SJL/J m 0.0 0.0   9 0.0 0.0 0.0
SM/J f 0.0 0.0   7 0.0 0.0 0.0
SM/J m 0.0 0.0   5 0.0 0.0 0.0
SPRET/EiJ f 0.0 0.0   7 0.0 0.0 0.0
SPRET/EiJ m 0.0 0.0   5 0.0 0.0 0.0
SWR/J f 0.0 0.0   10 0.0 0.0 0.0
SWR/J m 0.0 0.0   8 0.0 0.0 0.0
WSB/EiJ f 0.0 0.0   8 0.0 0.0 0.0
WSB/EiJ m 0.0 0.0   6 0.0 0.0 0.0
YBR/EiJ f 0.0 0.0   3 0.0 0.0 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 0.0 0.0 0.0
129S1/SvImJ m 0.0 0.0 0.0 0.0
A/J f 0.0 0.0 0.0 0.0
A/J m 0.0 0.0 0.0 0.0
AKR/J f 0.0 0.0 0.0 0.0
AKR/J m 0.0 0.0 0.0 0.0
BALB/cJ f 0.0 0.0 0.0 0.0
BALB/cJ m 0.0 0.0 0.0 0.0
BPH/2J f 0.0 0.0 0.0 0.0
BPH/2J m 0.0 0.0 0.0 0.0
BPL/1J f 0.0 0.0 0.0 0.0
BPL/1J m 0.0 0.0 0.0 0.0
BPN/3J f 0.0 0.0 0.0 0.0
BPN/3J m 0.0 0.0 0.0 0.0
BTBR T+ Itpr3tf/J f 0.0 0.0 0.0 0.0
BTBR T+ Itpr3tf/J m 0.0 0.0 0.0 0.0
C3H/HeJ f 0.0 0.0 0.0 0.0
C3H/HeJ m 0.0 0.0 0.0 0.0
C57BL/10J f 0.0 0.0 0.0 0.0
C57BL/10J m 0.0 0.0 0.0 0.0
C57BL/6J f 0.0 0.0 0.0 0.0
C57BL/6J m 0.0 0.0 0.0 0.0
C57BLKS/J f 0.0 0.0 0.0 0.0
C57BLKS/J m 0.0 0.0 0.0 0.0
C57BR/cdJ f 0.0 0.0 0.0 0.0
C57BR/cdJ m 0.0 0.0 0.0 0.0
C57L/J f 0.0 0.0 0.0 0.0
C57L/J m 0.0 0.0 0.0 0.0
C58/J f 0.0 0.0 0.0 0.0
C58/J m 0.0 0.0 0.0 0.0
CAST/EiJ f 0.0 0.0 0.0 0.0
CAST/EiJ m 0.0 0.0 0.0 0.0
CBA/J f 0.0 0.0 0.0 0.0
CBA/J m 0.0 0.0 0.0 0.0
CE/J f 0.0 0.0 0.0 0.0
CE/J m 0.0 0.0 0.0 0.0
CZECHII/EiJ f 0.0 0.0 0.0 0.0
CZECHII/EiJ m 0.0 0.0 0.0 0.0
DBA/1J f 0.0 0.0 0.0 0.0
DBA/1J m 0.0 0.0 0.0 0.0
DBA/2J f 0.0 0.0 0.0 0.0
DBA/2J m 0.0 0.0 0.0 0.0
FVB/NJ f 0.0 0.0 0.0 0.0
FVB/NJ m 0.0 0.0 0.0 0.0
I/LnJ f 0.0 0.0 0.0 0.0
I/LnJ m 0.0 0.0 0.0 0.0
KK/HlJ f 0.0 0.0 0.0 0.0
KK/HlJ m 0.0 0.0 0.0 0.0
LP/J f 0.0 0.0 0.0 0.0
LP/J m 0.0 0.0 0.0 0.0
MOLF/EiJ f 0.0 0.0 0.0 0.0
MOLF/EiJ m 0.0 0.0 0.0 0.0
NOD/ShiLtJ f 0.0 0.0 0.0 0.0
NOD/ShiLtJ m 0.0 0.0 0.0 0.0
NON/ShiLtJ f 0.0 0.0 0.0 0.0
NON/ShiLtJ m 0.0 0.0 0.0 0.0
NZB/BlNJ f 0.0 0.0 0.0 0.0
NZB/BlNJ m 0.0 0.0 0.0 0.0
NZW/LacJ f 0.0 0.0 0.0 0.0
NZW/LacJ m 0.0 0.0 0.0 0.0
PERA/EiJ f 0.0 0.0 0.0 0.0
PERA/EiJ m 0.0 0.0 0.0 0.0
P/J f 0.0 0.0 0.0 0.0
P/J m 0.0 0.0 0.0 0.0
PL/J f 0.0 0.0 0.0 0.0
PL/J m 0.0 0.0 0.0 0.0
RBF/DnJ f 0.0 0.0 0.0 0.0
RBF/DnJ m 0.0 0.0 0.0 0.0
RF/J f 0.0 0.0 0.0 0.0
RF/J m 0.0 0.0 0.0 0.0
RIIIS/J f 0.0 0.0 0.0 0.0
RIIIS/J m 0.0 0.0 0.0 0.0
SEA/GnJ f 0.0 0.0 0.0 0.0
SEA/GnJ m 0.0 0.0 0.0 0.0
SJL/J f 0.0 0.0 0.0 0.0
SJL/J m 0.0 0.0 0.0 0.0
SM/J f 0.0 0.0 0.0 0.0
SM/J m 0.0 0.0 0.0 0.0
SPRET/EiJ f 0.0 0.0 0.0 0.0
SPRET/EiJ m 0.0 0.0 0.0 0.0
SWR/J f 0.0 0.0 0.0 0.0
SWR/J m 0.0 0.0 0.0 0.0
WSB/EiJ f 0.0 0.0 0.0 0.0
WSB/EiJ m 0.0 0.0 0.0 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0 0.0 0.0 0.0
A/J both 0.0 0.0 0.0 0.0
AKR/J both 0.0 0.0 0.0 0.0
BALB/cJ both 0.0 0.0 0.0 0.0
BPH/2J both 0.0 0.0 0.0 0.0
BPL/1J both 0.0 0.0 0.0 0.0
BPN/3J both 0.0 0.0 0.0 0.0
BTBR T+ Itpr3tf/J both 0.0 0.0 0.0 0.0
C3H/HeJ both 0.0 0.0 0.0 0.0
C57BL/10J both 0.0 0.0 0.0 0.0
C57BL/6J both 0.0 0.0 0.0 0.0
C57BLKS/J both 0.0 0.0 0.0 0.0
C57BR/cdJ both 0.0 0.0 0.0 0.0
C57L/J both 0.0 0.0 0.0 0.0
C58/J both 0.0 0.0 0.0 0.0
CAST/EiJ both 0.0 0.0 0.0 0.0
CBA/J both 0.0 0.0 0.0 0.0
CE/J both 0.0 0.0 0.0 0.0
CZECHII/EiJ both 0.0 0.0 0.0 0.0
DBA/1J both 0.0 0.0 0.0 0.0
DBA/2J both 0.0 0.0 0.0 0.0
FVB/NJ both 0.0 0.0 0.0 0.0
I/LnJ both 0.0 0.0 0.0 0.0
KK/HlJ both 0.0 0.0 0.0 0.0
LP/J both 0.0 0.0 0.0 0.0
MOLF/EiJ both 0.0 0.0 0.0 0.0
NOD/ShiLtJ both 0.0 0.0 0.0 0.0
NON/ShiLtJ both 0.0 0.0 0.0 0.0
NZB/BlNJ both 0.0 0.0 0.0 0.0
NZW/LacJ both 0.0 0.0 0.0 0.0
PERA/EiJ both 0.0 0.0 0.0 0.0
P/J both 0.0 0.0 0.0 0.0
PL/J both 0.0 0.0 0.0 0.0
RBF/DnJ both 0.0 0.0 0.0 0.0
RF/J both 0.0 0.0 0.0 0.0
RIIIS/J both 0.0 0.0 0.0 0.0
SEA/GnJ both 0.0 0.0 0.0 0.0
SJL/J both 0.0 0.0 0.0 0.0
SM/J both 0.0 0.0 0.0 0.0
SPRET/EiJ both 0.0 0.0 0.0 0.0
SWR/J both 0.0 0.0 0.0 0.0
WSB/EiJ both 0.0 0.0 0.0 0.0




  GWAS USING LINEAR MIXED MODELS