MPD: Project measure / variable: Paigen1 arc

Project measure / variable: Paigen1 arc

ID, description, units	MPD:2910 arc gallbladder, arc (score: 0-4) [score] high-fat diet study
Data set, strains	Paigen1 inbred 43 strains sex: both age: 15-19wks
Procedure	histopathology
Ontology mappings	MA:0000356 gall bladder MA:0002513 bile MP:0004773 abnormal bile composition VT:0005084 gall bladder morphology trait

STRAIN COMPARISON PLOT

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Visualization Options Least squares means Alphabetical order Strains on X-axis Individual points

Paigen1 - gallbladder, arc (score: 0-4)

MEASURE SUMMARY

Measure Summary	Female	Male
Number of strains tested	43 strains	42 strains
Mean of the strain means	0 score	0 score
Median of the strain means	0 score	0 score
SD of the strain means	± 0	± 0
Coefficient of variation (CV)	0	0
Min–max range of strain means	0 – 0 score	0 – 0 score
Mean sample size per strain	8.8 mice	8.1 mice

ANOVA, Q-Q NORMALITY ASSESSMENT

ANOVA summary

Factor	DF	Sum of squares	Mean sum of squares	F value	p value (Pr>F)
sex	1	0.0	0.0
strain	41	0.0	0.0
sex:strain	41	0.0	0.0
Residuals	622	0.0	0.0

Q-Q normality assessment based on residuals

STRAIN MEANS (UNADJUSTED)

Strain	Sex	N mice
129S1/SvImJ	f	10
129S1/SvImJ	m	10
A/J	f	10
A/J	m	10
AKR/J	f	9
AKR/J	m	9
BALB/cJ	f	10
BALB/cJ	m	10
BPH/2J	f	10
BPH/2J	m	9
BPL/1J	f	10
BPL/1J	m	10
BPN/3J	f	10
BPN/3J	m	9
BTBR T⁺ Itpr3^tf/J	f	3
BTBR T⁺ Itpr3^tf/J	m	10
C3H/HeJ	f	9
C3H/HeJ	m	5
C57BL/10J	f	10
C57BL/10J	m	10
C57BL/6J	f	10
C57BL/6J	m	6
C57BLKS/J	f	6
C57BLKS/J	m	5
C57BR/cdJ	f	9
C57BR/cdJ	m	10
C57L/J	f	10
C57L/J	m	9
C58/J	f	10
C58/J	m	10
CAST/EiJ	f	5
CAST/EiJ	m	9
CBA/J	f	9
CBA/J	m	10
CE/J	f	9
CE/J	m	6
CZECHII/EiJ	f	7
CZECHII/EiJ	m	7
DBA/1J	f	10
DBA/1J	m	8
DBA/2J	f	10
DBA/2J	m	9
FVB/NJ	f	9
FVB/NJ	m	3
I/LnJ	f	9
I/LnJ	m	9
KK/HlJ	f	8
KK/HlJ	m	9
LP/J	f	9
LP/J	m	9
MOLF/EiJ	f	9
MOLF/EiJ	m	9
NOD/ShiLtJ	f	8
NOD/ShiLtJ	m	6
NON/ShiLtJ	f	9
NON/ShiLtJ	m	9
NZB/BlNJ	f	9
NZB/BlNJ	m	9
NZW/LacJ	f	8
NZW/LacJ	m	10
PERA/EiJ	f	8
PERA/EiJ	m	4
P/J	f	9
P/J	m	9
PL/J	f	10
PL/J	m	3
RBF/DnJ	f	9
RBF/DnJ	m	9
RF/J	f	10
RF/J	m	5
RIIIS/J	f	10
RIIIS/J	m	9
SEA/GnJ	f	8
SEA/GnJ	m	10
SJL/J	f	10
SJL/J	m	9
SM/J	f	7
SM/J	m	5
SPRET/EiJ	f	7
SPRET/EiJ	m	5
SWR/J	f	10
SWR/J	m	8
WSB/EiJ	f	8
WSB/EiJ	m	6
YBR/EiJ	f	3

LEAST SQUARES MEANS (MODEL-ADJUSTED)

Strain	Sex	Mean	SEM	UpperCL	LowerCL
129S1/SvImJ	f	0.0	0.0	0.0	0.0
129S1/SvImJ	m	0.0	0.0	0.0	0.0
A/J	f	0.0	0.0	0.0	0.0
A/J	m	0.0	0.0	0.0	0.0
AKR/J	f	0.0	0.0	0.0	0.0
AKR/J	m	0.0	0.0	0.0	0.0
BALB/cJ	f	0.0	0.0	0.0	0.0
BALB/cJ	m	0.0	0.0	0.0	0.0
BPH/2J	f	0.0	0.0	0.0	0.0
BPH/2J	m	0.0	0.0	0.0	0.0
BPL/1J	f	0.0	0.0	0.0	0.0
BPL/1J	m	0.0	0.0	0.0	0.0
BPN/3J	f	0.0	0.0	0.0	0.0
BPN/3J	m	0.0	0.0	0.0	0.0
BTBR T⁺ Itpr3^tf/J	f	0.0	0.0	0.0	0.0
BTBR T⁺ Itpr3^tf/J	m	0.0	0.0	0.0	0.0
C3H/HeJ	f	0.0	0.0	0.0	0.0
C3H/HeJ	m	0.0	0.0	0.0	0.0
C57BL/10J	f	0.0	0.0	0.0	0.0
C57BL/10J	m	0.0	0.0	0.0	0.0
C57BL/6J	f	0.0	0.0	0.0	0.0
C57BL/6J	m	0.0	0.0	0.0	0.0
C57BLKS/J	f	0.0	0.0	0.0	0.0
C57BLKS/J	m	0.0	0.0	0.0	0.0
C57BR/cdJ	f	0.0	0.0	0.0	0.0
C57BR/cdJ	m	0.0	0.0	0.0	0.0
C57L/J	f	0.0	0.0	0.0	0.0
C57L/J	m	0.0	0.0	0.0	0.0
C58/J	f	0.0	0.0	0.0	0.0
C58/J	m	0.0	0.0	0.0	0.0
CAST/EiJ	f	0.0	0.0	0.0	0.0
CAST/EiJ	m	0.0	0.0	0.0	0.0
CBA/J	f	0.0	0.0	0.0	0.0
CBA/J	m	0.0	0.0	0.0	0.0
CE/J	f	0.0	0.0	0.0	0.0
CE/J	m	0.0	0.0	0.0	0.0
CZECHII/EiJ	f	0.0	0.0	0.0	0.0
CZECHII/EiJ	m	0.0	0.0	0.0	0.0
DBA/1J	f	0.0	0.0	0.0	0.0
DBA/1J	m	0.0	0.0	0.0	0.0
DBA/2J	f	0.0	0.0	0.0	0.0
DBA/2J	m	0.0	0.0	0.0	0.0
FVB/NJ	f	0.0	0.0	0.0	0.0
FVB/NJ	m	0.0	0.0	0.0	0.0
I/LnJ	f	0.0	0.0	0.0	0.0
I/LnJ	m	0.0	0.0	0.0	0.0
KK/HlJ	f	0.0	0.0	0.0	0.0
KK/HlJ	m	0.0	0.0	0.0	0.0
LP/J	f	0.0	0.0	0.0	0.0
LP/J	m	0.0	0.0	0.0	0.0
MOLF/EiJ	f	0.0	0.0	0.0	0.0
MOLF/EiJ	m	0.0	0.0	0.0	0.0
NOD/ShiLtJ	f	0.0	0.0	0.0	0.0
NOD/ShiLtJ	m	0.0	0.0	0.0	0.0
NON/ShiLtJ	f	0.0	0.0	0.0	0.0
NON/ShiLtJ	m	0.0	0.0	0.0	0.0
NZB/BlNJ	f	0.0	0.0	0.0	0.0
NZB/BlNJ	m	0.0	0.0	0.0	0.0
NZW/LacJ	f	0.0	0.0	0.0	0.0
NZW/LacJ	m	0.0	0.0	0.0	0.0
PERA/EiJ	f	0.0	0.0	0.0	0.0
PERA/EiJ	m	0.0	0.0	0.0	0.0
P/J	f	0.0	0.0	0.0	0.0
P/J	m	0.0	0.0	0.0	0.0
PL/J	f	0.0	0.0	0.0	0.0
PL/J	m	0.0	0.0	0.0	0.0
RBF/DnJ	f	0.0	0.0	0.0	0.0
RBF/DnJ	m	0.0	0.0	0.0	0.0
RF/J	f	0.0	0.0	0.0	0.0
RF/J	m	0.0	0.0	0.0	0.0
RIIIS/J	f	0.0	0.0	0.0	0.0
RIIIS/J	m	0.0	0.0	0.0	0.0
SEA/GnJ	f	0.0	0.0	0.0	0.0
SEA/GnJ	m	0.0	0.0	0.0	0.0
SJL/J	f	0.0	0.0	0.0	0.0
SJL/J	m	0.0	0.0	0.0	0.0
SM/J	f	0.0	0.0	0.0	0.0
SM/J	m	0.0	0.0	0.0	0.0
SPRET/EiJ	f	0.0	0.0	0.0	0.0
SPRET/EiJ	m	0.0	0.0	0.0	0.0
SWR/J	f	0.0	0.0	0.0	0.0
SWR/J	m	0.0	0.0	0.0	0.0
WSB/EiJ	f	0.0	0.0	0.0	0.0
WSB/EiJ	m	0.0	0.0	0.0	0.0

LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED

Strain	Sex	Mean	SEM	UpperCL	LowerCL
129S1/SvImJ	both	0.0	0.0	0.0	0.0
A/J	both	0.0	0.0	0.0	0.0
AKR/J	both	0.0	0.0	0.0	0.0
BALB/cJ	both	0.0	0.0	0.0	0.0
BPH/2J	both	0.0	0.0	0.0	0.0
BPL/1J	both	0.0	0.0	0.0	0.0
BPN/3J	both	0.0	0.0	0.0	0.0
BTBR T⁺ Itpr3^tf/J	both	0.0	0.0	0.0	0.0
C3H/HeJ	both	0.0	0.0	0.0	0.0
C57BL/10J	both	0.0	0.0	0.0	0.0
C57BL/6J	both	0.0	0.0	0.0	0.0
C57BLKS/J	both	0.0	0.0	0.0	0.0
C57BR/cdJ	both	0.0	0.0	0.0	0.0
C57L/J	both	0.0	0.0	0.0	0.0
C58/J	both	0.0	0.0	0.0	0.0
CAST/EiJ	both	0.0	0.0	0.0	0.0
CBA/J	both	0.0	0.0	0.0	0.0
CE/J	both	0.0	0.0	0.0	0.0
CZECHII/EiJ	both	0.0	0.0	0.0	0.0
DBA/1J	both	0.0	0.0	0.0	0.0
DBA/2J	both	0.0	0.0	0.0	0.0
FVB/NJ	both	0.0	0.0	0.0	0.0
I/LnJ	both	0.0	0.0	0.0	0.0
KK/HlJ	both	0.0	0.0	0.0	0.0
LP/J	both	0.0	0.0	0.0	0.0
MOLF/EiJ	both	0.0	0.0	0.0	0.0
NOD/ShiLtJ	both	0.0	0.0	0.0	0.0
NON/ShiLtJ	both	0.0	0.0	0.0	0.0
NZB/BlNJ	both	0.0	0.0	0.0	0.0
NZW/LacJ	both	0.0	0.0	0.0	0.0
PERA/EiJ	both	0.0	0.0	0.0	0.0
P/J	both	0.0	0.0	0.0	0.0
PL/J	both	0.0	0.0	0.0	0.0
RBF/DnJ	both	0.0	0.0	0.0	0.0
RF/J	both	0.0	0.0	0.0	0.0
RIIIS/J	both	0.0	0.0	0.0	0.0
SEA/GnJ	both	0.0	0.0	0.0	0.0
SJL/J	both	0.0	0.0	0.0	0.0
SM/J	both	0.0	0.0	0.0	0.0
SPRET/EiJ	both	0.0	0.0	0.0	0.0
SWR/J	both	0.0	0.0	0.0	0.0
WSB/EiJ	both	0.0	0.0	0.0	0.0

INDIVIDUAL ANIMAL VALUES

Click here to view individual animal values

GWAS USING LINEAR MIXED MODELS