Project measure / variable:   Odet1   seminif_germ_slough

ID, description, units MPD:53728   seminif_germ_slough   number of seminiferous tubules with germ cell sloughing, transverse section   [n]  
Data set, strains Odet1   inbred w/CC8   8 strains     sex: m     age: 10-66wks
Procedure histopathology
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  STRAIN COMPARISON PLOT
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Odet1 - number of seminiferous tubules with germ cell sloughing, transverse section



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means3.36   n
Median of the strain means2.97   n
SD of the strain means± 2.82
Coefficient of variation (CV)0.838
Min–max range of strain means1.04   –   10.0   n
Mean sample size per strain25.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 1281.7307 183.1044 2.9282 0.0061
Residuals 199 12443.6993 62.5312


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.56 2.34   32 0.414 1.5 -0.64
A/J m 2.92 4.61   26 0.905 1.58 -0.16
C57BL/6J m 3.5 9.57   36 1.6 2.73 0.05
CAST/EiJ m 1.79 3.31   19 0.759 1.85 -0.56
NOD/ShiLtJ m 1.04 1.61   26 0.316 1.55 -0.82
NZO/HlLtJ m 10.0 18.6   22 3.96 1.85 2.36
PWK/PhJ m 3.06 5.2   16 1.3 1.7 -0.11
WSB/EiJ m 3.03 4.6   30 0.841 1.52 -0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.5625 1.3979 4.3191 0.0
A/J m 2.9231 1.5508 5.9812 0.0
C57BL/6J m 3.5 1.3179 6.0989 0.9011
CAST/EiJ m 1.7895 1.8141 5.3669 0.0
NOD/ShiLtJ m 1.0385 1.5508 4.0966 0.0
NZO/HlLtJ m 10.0455 1.6859 13.37 6.7209
PWK/PhJ m 3.0625 1.9769 6.9609 0.0
WSB/EiJ m 3.0333 1.4437 5.8803 0.1863




  GWAS USING LINEAR MIXED MODELS