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Project measure / variable:   Odet1   seminif_many_vacuoles

ID, description, units MPD:53725   seminif_many_vacuoles   number of seminiferous tubules with many vacuoles, transverse section   [n]  
Data set, strains Odet1   inbred w/CC8   8 strains     sex: m     age: 10-66wks
Procedure histopathology
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  STRAIN COMPARISON PLOT
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Odet1 - number of seminiferous tubules with many vacuoles, transverse section



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means2.72   n
Median of the strain means0.686   n
SD of the strain means± 5.83
Coefficient of variation (CV)2.14
Min–max range of strain means0.188   –   17.1   n
Mean sample size per strain25.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 6930.6317 990.0902 21.8693 < 0.0001
Residuals 199 9009.349 45.2731


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.781 2.22   32 0.393 2.85 -0.33
A/J m 0.192 0.491   26 0.0964 2.56 -0.43
C57BL/6J m 1.17 1.5   36 0.25 1.29 -0.27
CAST/EiJ m 0.211 0.535   19 0.123 2.54 -0.43
NOD/ShiLtJ m 1.54 1.65   26 0.325 1.08 -0.2
NZO/HlLtJ m 0.591 2.13   22 0.454 3.61 -0.37
PWK/PhJ m 0.188 0.403   16 0.101 2.15 -0.43
WSB/EiJ m 17.1 17.2   30 3.14 1.01 2.0, 85.0 2.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.7812 1.1894 3.1268 0.0
A/J m 0.1923 1.3196 2.7944 0.0
C57BL/6J m 1.1667 1.1214 3.3781 0.0
CAST/EiJ m 0.2105 1.5436 3.2545 0.0
NOD/ShiLtJ m 1.5385 1.3196 4.1406 0.0
NZO/HlLtJ m 0.5909 1.4345 3.4197 0.0
PWK/PhJ m 0.1875 1.6821 3.5046 0.0
WSB/EiJ m 17.1333 1.2285 19.5558 14.7109




  GWAS USING LINEAR MIXED MODELS