Phenotype measure:   Paigen1   filaments

ID, description, units MPD:2911   filaments   gallbladder, filaments (score: 0-4)   [score]
high-fat diet study
Data set, strains Paigen1   inbred   43 strains     sex: both     age: 15-19wks
Procedure histopathology
Ontology mappings

  STRAIN COMPARISON PLOT
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Paigen1 - gallbladder, filaments (score: 0-4)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested43 strains42 strains
Mean of the strain means0.0122   score 0.00264   score
Median of the strain means0   score 0   score
SD of the strain means± 0.0461 ± 0.0171
Coefficient of variation (CV)3.77 6.48
Min–max range of strain means0   –   0.200   score 0   –   0.111   score
Mean sample size per strain8.8   mice 8.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0196 0.0196 1.7464 0.1868
strain 41 0.4652 0.0113 1.0135 0.4501
sex:strain 41 0.5004 0.0122 1.09 0.3268
Residuals 622 6.9639 0.0112


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   10 0.0 0.0 -0.26
129S1/SvImJ m 0.0 0.0   10 0.0 0.0 -0.15
A/J f 0.2 0.632   10 0.2 3.16 4.07
A/J m 0.0 0.0   10 0.0 0.0 -0.15
AKR/J f 0.0 0.0   9 0.0 0.0 -0.26
AKR/J m 0.0 0.0   9 0.0 0.0 -0.15
BALB/cJ f 0.2 0.422   10 0.133 2.11 4.07
BALB/cJ m 0.0 0.0   10 0.0 0.0 -0.15
BPH/2J f 0.0 0.0   10 0.0 0.0 -0.26
BPH/2J m 0.0 0.0   9 0.0 0.0 -0.15
BPL/1J f 0.0 0.0   10 0.0 0.0 -0.26
BPL/1J m 0.0 0.0   10 0.0 0.0 -0.15
BPN/3J f 0.0 0.0   10 0.0 0.0 -0.26
BPN/3J m 0.0 0.0   9 0.0 0.0 -0.15
BTBR T+ Itpr3tf/J f 0.0 0.0   3 0.0 0.0 -0.26
BTBR T+ Itpr3tf/J m 0.0 0.0   10 0.0 0.0 -0.15
C3H/HeJ f 0.0 0.0   9 0.0 0.0 -0.26
C3H/HeJ m 0.0 0.0   5 0.0 0.0 -0.15
C57BL/10J f 0.0 0.0   10 0.0 0.0 -0.26
C57BL/10J m 0.0 0.0   10 0.0 0.0 -0.15
C57BL/6J f 0.0 0.0   10 0.0 0.0 -0.26
C57BL/6J m 0.0 0.0   6 0.0 0.0 -0.15
C57BLKS/J f 0.0 0.0   6 0.0 0.0 -0.26
C57BLKS/J m 0.0 0.0   5 0.0 0.0 -0.15
C57BR/cdJ f 0.0 0.0   9 0.0 0.0 -0.26
C57BR/cdJ m 0.0 0.0   10 0.0 0.0 -0.15
C57L/J f 0.0 0.0   10 0.0 0.0 -0.26
C57L/J m 0.0 0.0   9 0.0 0.0 -0.15
C58/J f 0.0 0.0   10 0.0 0.0 -0.26
C58/J m 0.0 0.0   10 0.0 0.0 -0.15
CAST/EiJ f 0.0 0.0   5 0.0 0.0 -0.26
CAST/EiJ m 0.0 0.0   9 0.0 0.0 -0.15
CBA/J f 0.0 0.0   9 0.0 0.0 -0.26
CBA/J m 0.0 0.0   10 0.0 0.0 -0.15
CE/J f 0.0 0.0   9 0.0 0.0 -0.26
CE/J m 0.0 0.0   6 0.0 0.0 -0.15
CZECHII/EiJ f 0.0 0.0   7 0.0 0.0 -0.26
CZECHII/EiJ m 0.0 0.0   7 0.0 0.0 -0.15
DBA/1J f 0.0 0.0   10 0.0 0.0 -0.26
DBA/1J m 0.0 0.0   8 0.0 0.0 -0.15
DBA/2J f 0.0 0.0   10 0.0 0.0 -0.26
DBA/2J m 0.0 0.0   9 0.0 0.0 -0.15
FVB/NJ f 0.0 0.0   9 0.0 0.0 -0.26
FVB/NJ m 0.0 0.0   3 0.0 0.0 -0.15
I/LnJ f 0.0 0.0   9 0.0 0.0 -0.26
I/LnJ m 0.0 0.0   9 0.0 0.0 -0.15
KK/HlJ f 0.0 0.0   8 0.0 0.0 -0.26
KK/HlJ m 0.0 0.0   9 0.0 0.0 -0.15
LP/J f 0.0 0.0   9 0.0 0.0 -0.26
LP/J m 0.0 0.0   9 0.0 0.0 -0.15
MOLF/EiJ f 0.0 0.0   9 0.0 0.0 -0.26
MOLF/EiJ m 0.0 0.0   9 0.0 0.0 -0.15
NOD/ShiLtJ f 0.0 0.0   8 0.0 0.0 -0.26
NOD/ShiLtJ m 0.0 0.0   6 0.0 0.0 -0.15
NON/ShiLtJ f 0.0 0.0   9 0.0 0.0 -0.26
NON/ShiLtJ m 0.0 0.0   9 0.0 0.0 -0.15
NZB/BlNJ f 0.0 0.0   9 0.0 0.0 -0.26
NZB/BlNJ m 0.0 0.0   9 0.0 0.0 -0.15
NZW/LacJ f 0.125 0.354   8 0.125 2.83 2.45
NZW/LacJ m 0.0 0.0   10 0.0 0.0 -0.15
PERA/EiJ f 0.0 0.0   8 0.0 0.0 -0.26
PERA/EiJ m 0.0 0.0   4 0.0 0.0 -0.15
P/J f 0.0 0.0   9 0.0 0.0 -0.26
P/J m 0.111 0.333   9 0.111 3.0 6.33
PL/J f 0.0 0.0   10 0.0 0.0 -0.26
PL/J m 0.0 0.0   3 0.0 0.0 -0.15
RBF/DnJ f 0.0 0.0   9 0.0 0.0 -0.26
RBF/DnJ m 0.0 0.0   9 0.0 0.0 -0.15
RF/J f 0.0 0.0   10 0.0 0.0 -0.26
RF/J m 0.0 0.0   5 0.0 0.0 -0.15
RIIIS/J f 0.0 0.0   10 0.0 0.0 -0.26
RIIIS/J m 0.0 0.0   9 0.0 0.0 -0.15
SEA/GnJ f 0.0 0.0   8 0.0 0.0 -0.26
SEA/GnJ m 0.0 0.0   10 0.0 0.0 -0.15
SJL/J f 0.0 0.0   10 0.0 0.0 -0.26
SJL/J m 0.0 0.0   9 0.0 0.0 -0.15
SM/J f 0.0 0.0   7 0.0 0.0 -0.26
SM/J m 0.0 0.0   5 0.0 0.0 -0.15
SPRET/EiJ f 0.0 0.0   7 0.0 0.0 -0.26
SPRET/EiJ m 0.0 0.0   5 0.0 0.0 -0.15
SWR/J f 0.0 0.0   10 0.0 0.0 -0.26
SWR/J m 0.0 0.0   8 0.0 0.0 -0.15
WSB/EiJ f 0.0 0.0   8 0.0 0.0 -0.26
WSB/EiJ m 0.0 0.0   6 0.0 0.0 -0.15
YBR/EiJ f 0.0 0.0   3 0.0 0.0 -0.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 0.0335 0.0657 -0.0657
129S1/SvImJ m 0.0 0.0335 0.0657 -0.0657
A/J f 0.2 0.0335 0.2657 0.1343
A/J m 0.0 0.0335 0.0657 -0.0657
AKR/J f 0.0 0.0353 0.0693 -0.0693
AKR/J m 0.0 0.0353 0.0693 -0.0693
BALB/cJ f 0.2 0.0335 0.2657 0.1343
BALB/cJ m 0.0 0.0335 0.0657 -0.0657
BPH/2J f 0.0 0.0335 0.0657 -0.0657
BPH/2J m 0.0 0.0353 0.0693 -0.0693
BPL/1J f 0.0 0.0335 0.0657 -0.0657
BPL/1J m 0.0 0.0335 0.0657 -0.0657
BPN/3J f 0.0 0.0335 0.0657 -0.0657
BPN/3J m 0.0 0.0353 0.0693 -0.0693
BTBR T+ Itpr3tf/J f 0.0 0.0611 0.12 -0.12
BTBR T+ Itpr3tf/J m 0.0 0.0335 0.0657 -0.0657
C3H/HeJ f 0.0 0.0353 0.0693 -0.0693
C3H/HeJ m 0.0 0.0473 0.0929 -0.0929
C57BL/10J f 0.0 0.0335 0.0657 -0.0657
C57BL/10J m 0.0 0.0335 0.0657 -0.0657
C57BL/6J f 0.0 0.0335 0.0657 -0.0657
C57BL/6J m 0.0 0.0432 0.0848 -0.0848
C57BLKS/J f 0.0 0.0432 0.0848 -0.0848
C57BLKS/J m 0.0 0.0473 0.0929 -0.0929
C57BR/cdJ f 0.0 0.0353 0.0693 -0.0693
C57BR/cdJ m 0.0 0.0335 0.0657 -0.0657
C57L/J f 0.0 0.0335 0.0657 -0.0657
C57L/J m 0.0 0.0353 0.0693 -0.0693
C58/J f 0.0 0.0335 0.0657 -0.0657
C58/J m 0.0 0.0335 0.0657 -0.0657
CAST/EiJ f 0.0 0.0473 0.0929 -0.0929
CAST/EiJ m 0.0 0.0353 0.0693 -0.0693
CBA/J f 0.0 0.0353 0.0693 -0.0693
CBA/J m 0.0 0.0335 0.0657 -0.0657
CE/J f 0.0 0.0353 0.0693 -0.0693
CE/J m 0.0 0.0432 0.0848 -0.0848
CZECHII/EiJ f 0.0 0.04 0.0785 -0.0785
CZECHII/EiJ m 0.0 0.04 0.0785 -0.0785
DBA/1J f 0.0 0.0335 0.0657 -0.0657
DBA/1J m 0.0 0.0374 0.0735 -0.0735
DBA/2J f 0.0 0.0335 0.0657 -0.0657
DBA/2J m 0.0 0.0353 0.0693 -0.0693
FVB/NJ f 0.0 0.0353 0.0693 -0.0693
FVB/NJ m 0.0 0.0611 0.12 -0.12
I/LnJ f 0.0 0.0353 0.0693 -0.0693
I/LnJ m 0.0 0.0353 0.0693 -0.0693
KK/HlJ f 0.0 0.0374 0.0735 -0.0735
KK/HlJ m 0.0 0.0353 0.0693 -0.0693
LP/J f 0.0 0.0353 0.0693 -0.0693
LP/J m 0.0 0.0353 0.0693 -0.0693
MOLF/EiJ f 0.0 0.0353 0.0693 -0.0693
MOLF/EiJ m 0.0 0.0353 0.0693 -0.0693
NOD/ShiLtJ f 0.0 0.0374 0.0735 -0.0735
NOD/ShiLtJ m 0.0 0.0432 0.0848 -0.0848
NON/ShiLtJ f 0.0 0.0353 0.0693 -0.0693
NON/ShiLtJ m 0.0 0.0353 0.0693 -0.0693
NZB/BlNJ f 0.0 0.0353 0.0693 -0.0693
NZB/BlNJ m 0.0 0.0353 0.0693 -0.0693
NZW/LacJ f 0.125 0.0374 0.1985 0.0515
NZW/LacJ m 0.0 0.0335 0.0657 -0.0657
PERA/EiJ f 0.0 0.0374 0.0735 -0.0735
PERA/EiJ m 0.0 0.0529 0.1039 -0.1039
P/J f 0.0 0.0353 0.0693 -0.0693
P/J m 0.1111 0.0353 0.1804 0.0418
PL/J f 0.0 0.0335 0.0657 -0.0657
PL/J m 0.0 0.0611 0.12 -0.12
RBF/DnJ f 0.0 0.0353 0.0693 -0.0693
RBF/DnJ m 0.0 0.0353 0.0693 -0.0693
RF/J f 0.0 0.0335 0.0657 -0.0657
RF/J m 0.0 0.0473 0.0929 -0.0929
RIIIS/J f 0.0 0.0335 0.0657 -0.0657
RIIIS/J m 0.0 0.0353 0.0693 -0.0693
SEA/GnJ f 0.0 0.0374 0.0735 -0.0735
SEA/GnJ m 0.0 0.0335 0.0657 -0.0657
SJL/J f 0.0 0.0335 0.0657 -0.0657
SJL/J m 0.0 0.0353 0.0693 -0.0693
SM/J f 0.0 0.04 0.0785 -0.0785
SM/J m 0.0 0.0473 0.0929 -0.0929
SPRET/EiJ f 0.0 0.04 0.0785 -0.0785
SPRET/EiJ m 0.0 0.0473 0.0929 -0.0929
SWR/J f 0.0 0.0335 0.0657 -0.0657
SWR/J m 0.0 0.0374 0.0735 -0.0735
WSB/EiJ f 0.0 0.0374 0.0735 -0.0735
WSB/EiJ m 0.0 0.0432 0.0848 -0.0848


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0 0.0237 0.0465 -0.0465
A/J both 0.1 0.0237 0.1465 0.0535
AKR/J both 0.0 0.0249 0.049 -0.049
BALB/cJ both 0.1 0.0237 0.1465 0.0535
BPH/2J both 0.0 0.0243 0.0477 -0.0477
BPL/1J both 0.0 0.0237 0.0465 -0.0465
BPN/3J both 0.0 0.0243 0.0477 -0.0477
BTBR T+ Itpr3tf/J both 0.0 0.0348 0.0684 -0.0684
C3H/HeJ both 0.0 0.0295 0.0579 -0.0579
C57BL/10J both 0.0 0.0237 0.0465 -0.0465
C57BL/6J both 0.0 0.0273 0.0537 -0.0537
C57BLKS/J both 0.0 0.032 0.0629 -0.0629
C57BR/cdJ both 0.0 0.0243 0.0477 -0.0477
C57L/J both 0.0 0.0243 0.0477 -0.0477
C58/J both 0.0 0.0237 0.0465 -0.0465
CAST/EiJ both 0.0 0.0295 0.0579 -0.0579
CBA/J both 0.0 0.0243 0.0477 -0.0477
CE/J both 0.0 0.0279 0.0548 -0.0548
CZECHII/EiJ both 0.0 0.0283 0.0555 -0.0555
DBA/1J both 0.0 0.0251 0.0493 -0.0493
DBA/2J both 0.0 0.0243 0.0477 -0.0477
FVB/NJ both 0.0 0.0353 0.0693 -0.0693
I/LnJ both 0.0 0.0249 0.049 -0.049
KK/HlJ both 0.0 0.0257 0.0505 -0.0505
LP/J both 0.0 0.0249 0.049 -0.049
MOLF/EiJ both 0.0 0.0249 0.049 -0.049
NOD/ShiLtJ both 0.0 0.0286 0.0561 -0.0561
NON/ShiLtJ both 0.0 0.0249 0.049 -0.049
NZB/BlNJ both 0.0 0.0249 0.049 -0.049
NZW/LacJ both 0.0625 0.0251 0.1118 0.0132
PERA/EiJ both 0.0 0.0324 0.0636 -0.0636
P/J both 0.0556 0.0249 0.1045 0.0066
PL/J both 0.0 0.0348 0.0684 -0.0684
RBF/DnJ both 0.0 0.0249 0.049 -0.049
RF/J both 0.0 0.029 0.0569 -0.0569
RIIIS/J both 0.0 0.0243 0.0477 -0.0477
SEA/GnJ both 0.0 0.0251 0.0493 -0.0493
SJL/J both 0.0 0.0243 0.0477 -0.0477
SM/J both 0.0 0.031 0.0608 -0.0608
SPRET/EiJ both 0.0 0.031 0.0608 -0.0608
SWR/J both 0.0 0.0251 0.0493 -0.0493
WSB/EiJ both 0.0 0.0286 0.0561 -0.0561




  GWAS USING LINEAR MIXED MODELS