Phenotype measure:   Sandell1   articular_12

ID, description, units MPD:49802   articular_12   articular cartilage wound healing at 12 wks post-injury   [score]
Data set, strains Sandell1   LGXSM w/par   14 strains     sex: both     age: 20wks
Procedure histopathology
Ontology mappings

  STRAIN COMPARISON PLOT
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Sandell1 - articular cartilage wound healing at 12 wks post-injury



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains14 strains
Mean of the strain means2.74   score 3.21   score
Median of the strain means2.48   score 3.31   score
SD of the strain means± 0.851 ± 0.884
Coefficient of variation (CV)0.311 0.275
Min–max range of strain means2.03   –   5.07   score 2.06   –   5.29   score
Mean sample size per strain6.0   mice 5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.6546 5.6546 2.6181 0.1083
strain 11 45.0732 4.0976 1.8972 0.0462
sex:strain 11 28.5195 2.5927 1.2004 0.2942
Residuals 119 257.0158 2.1598


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
DBA/1J m 2.22 0.445   4 0.222 0.2 2.0, 2.89 -1.12
DBA/2J f 5.07 2.87   5 1.29 0.567 2.11, 8.89 2.74
DBA/2J m 3.3 2.09   4 1.05 0.634 2.22, 6.44 0.1
LG/J f 2.7 0.567   3 0.327 0.21 2.05, 3.06 -0.05
LG/J m 3.83 2.05   5 0.915 0.534 2.33, 6.61 0.7
LGXSM18 f 2.42 0.883   5 0.395 0.365 2.0, 4.0 -0.38
LGXSM18 m 2.18 0.347   5 0.155 0.159 1.67, 2.56 -1.17
LGXSM19 f 2.05 0.414   7 0.157 0.202 1.17, 2.33 -0.81
LGXSM19 m 3.43 3.05   5 1.37 0.89 1.94, 8.89 0.25
LGXSM33 f 2.41 0.829   8 0.293 0.344 1.67, 4.17 -0.39
LGXSM33 m 3.54 1.82   3 1.05 0.515 2.0, 5.55 0.37
LGXSM35 f 2.06 0.184   8 0.0652 0.0897 1.67, 2.22 -0.8
LGXSM35 m 3.9 2.77   7 1.05 0.711 2.0, 8.89 0.78
LGXSM4 f 2.03 0.0838   6 0.0342 0.0413 1.89, 2.11 -0.83
LGXSM4 m 2.06 0.221   9 0.0736 0.107 1.67, 2.44 -1.3
LGXSM46 f 3.04 1.22   5 0.547 0.402 2.17, 5.0 0.35
LGXSM46 m 2.69 1.23   8 0.437 0.46 2.0, 5.56 -0.59
LGXSM48 f 2.55 0.447   6 0.182 0.175 2.17, 3.28 -0.22
LGXSM48 m 2.65 1.1   6 0.447 0.413 1.94, 4.55 -0.64
LGXSM5 f 3.5 2.0   5 0.896 0.573 2.0, 6.66 0.89
LGXSM5 m 3.92 1.8   7 0.682 0.46 2.0, 6.11 0.8
LGXSM6 f 2.31 0.453   5 0.203 0.196 2.0, 3.0 -0.51
LGXSM6 m 3.33 2.25   5 1.0 0.674 1.83, 7.28 0.13
MRL/MpJ m 5.29 4.37   11 1.32 0.826 1.89, 13.7 2.35
SM/J f 2.74 1.03   11 0.31 0.376 1.61, 5.11 0.0
SM/J m 2.63 0.79   5 0.353 0.3 2.0, 3.94 -0.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
DBA/2J f 5.066 0.6572 6.3674 3.7646
DBA/2J m 3.3025 0.7348 4.7575 1.8475
LG/J f 2.7033 0.8485 4.3834 1.0232
LG/J m 3.83 0.6572 5.1314 2.5286
LGXSM18 f 2.422 0.6572 3.7234 1.1206
LGXSM18 m 2.178 0.6572 3.4794 0.8766
LGXSM19 f 2.0471 0.5555 3.147 0.9473
LGXSM19 m 3.432 0.6572 4.7334 2.1306
LGXSM33 f 2.41 0.5196 3.4388 1.3812
LGXSM33 m 3.5367 0.8485 5.2168 1.8566
LGXSM35 f 2.0563 0.5196 3.0851 1.0274
LGXSM35 m 3.8971 0.5555 4.997 2.7973
LGXSM4 f 2.0283 0.6 3.2163 0.8403
LGXSM4 m 2.0611 0.4899 3.0311 1.0911
LGXSM46 f 3.044 0.6572 4.3454 1.7426
LGXSM46 m 2.685 0.5196 3.7138 1.6562
LGXSM48 f 2.5467 0.6 3.7347 1.3587
LGXSM48 m 2.655 0.6 3.843 1.467
LGXSM5 f 3.498 0.6572 4.7994 2.1966
LGXSM5 m 3.92 0.5555 5.0199 2.8201
LGXSM6 f 2.31 0.6572 3.6114 1.0086
LGXSM6 m 3.334 0.6572 4.6354 2.0326
SM/J f 2.7355 0.4431 3.6129 1.8581
SM/J m 2.632 0.6572 3.9334 1.3306


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
DBA/2J both 4.1843 0.4929 5.1603 3.2082
LG/J both 3.2667 0.5366 4.3292 2.2041
LGXSM18 both 2.3 0.4647 3.2202 1.3798
LGXSM19 both 2.7396 0.4303 3.5915 1.8876
LGXSM33 both 2.9733 0.4975 3.9584 1.9883
LGXSM35 both 2.9767 0.3803 3.7297 2.2237
LGXSM4 both 2.0447 0.3873 2.8116 1.2779
LGXSM46 both 2.8645 0.4189 3.694 2.035
LGXSM48 both 2.6008 0.4242 3.4409 1.7608
LGXSM5 both 3.709 0.4303 4.561 2.857
LGXSM6 both 2.822 0.4647 3.7422 1.9018
SM/J both 2.6837 0.3963 3.4685 1.899




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA