Phenotype measure:   Wahlsten1   ac_length

ID, description, units MPD:10808   ac_length   length of anterior commissure at mid-sagittal plane   [mm]
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 12wks
Procedure histopathology
Ontology mappings

  STRAIN COMPARISON PLOT
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Wahlsten1 - length of anterior commissure at mid-sagittal plane



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains20 strains
Mean of the strain means0.444   mm 0.446   mm
Median of the strain means0.455   mm 0.446   mm
SD of the strain means± 0.0396 ± 0.0470
Coefficient of variation (CV)0.0891 0.105
Min–max range of strain means0.372   –   0.518   mm 0.364   –   0.538   mm
Mean sample size per strain9.5   mice 9.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0016 0.0016 1.1047 0.294
strain 19 0.6599 0.0347 23.3973 < 0.0001
sex:strain 19 0.039 0.0021 1.3836 0.1315
Residuals 345 0.5121 0.0015


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.442 0.00963   10 0.00305 0.0218 0.428, 0.458 -0.06
129S1/SvImJ m 0.402 0.092   10 0.0291 0.229 0.147, 0.457 -0.93
A/J f 0.458 0.0214   8 0.00758 0.0468 0.425, 0.489 0.34
A/J m 0.445 0.0346   10 0.0109 0.0778 0.388, 0.496 -0.01
AKR/J f 0.459 0.0579   9 0.0193 0.126 0.398, 0.602 0.37
AKR/J m 0.446 0.0214   8 0.00757 0.048 0.402, 0.47 0.01
BALB/cByJ f 0.464 0.0421   10 0.0133 0.0907 0.383, 0.538 0.5
BALB/cByJ m 0.51 0.105   10 0.0332 0.206 0.4, 0.67 1.37
BTBR T+ Itpr3tf/J f 0.474 0.0247   12 0.00713 0.0521 0.445, 0.526 0.75
BTBR T+ Itpr3tf/J m 0.471 0.0325   6 0.0132 0.0689 0.412, 0.504 0.54
C3H/HeJ f 0.417 0.0158   10 0.005 0.038 0.397, 0.442 -0.69
C3H/HeJ m 0.417 0.0239   8 0.00843 0.0572 0.381, 0.439 -0.61
C57BL/6J f 0.483 0.0315   8 0.0111 0.0652 0.435, 0.531 0.98
C57BL/6J m 0.518 0.0864   10 0.0273 0.167 0.427, 0.746 1.54
C57L/J f 0.455 0.0219   10 0.00692 0.048 0.425, 0.489 0.27
C57L/J m 0.472 0.0218   8 0.00769 0.0461 0.442, 0.511 0.56
C58/J f 0.457 0.0275   9 0.00918 0.0603 0.404, 0.491 0.32
C58/J m 0.457 0.0207   10 0.00654 0.0452 0.418, 0.484 0.24
CAST/EiJ f 0.372 0.04   9 0.0133 0.107 0.313, 0.447 -1.83
CAST/EiJ m 0.364 0.0161   9 0.00538 0.0443 0.334, 0.381 -1.74
DBA/2J f 0.408 0.0186   10 0.00589 0.0456 0.381, 0.435 -0.92
DBA/2J m 0.398 0.0448   8 0.0158 0.113 0.344, 0.454 -1.01
FVB/NJ f 0.465 0.0278   10 0.00879 0.0598 0.422, 0.508 0.52
FVB/NJ m 0.459 0.029   11 0.00873 0.0631 0.404, 0.501 0.28
MOLF/EiJ f 0.398 0.0412   8 0.0146 0.104 0.348, 0.474 -1.17
MOLF/EiJ m 0.392 0.0226   6 0.00923 0.0577 0.367, 0.424 -1.14
NOD/ShiLtJ f 0.504 0.0162   12 0.00467 0.0321 0.481, 0.532 1.51
NOD/ShiLtJ m 0.476 0.029   12 0.00837 0.0609 0.428, 0.532 0.65
NZB/BlNJ f 0.441 0.0253   6 0.0103 0.0573 0.421, 0.491 -0.09
NZB/BlNJ m 0.431 0.0349   12 0.0101 0.0808 0.356, 0.491 -0.31
PERA/EiJ f 0.393 0.0238   10 0.00753 0.0606 0.362, 0.423 -1.3
PERA/EiJ m 0.404 0.0349   12 0.0101 0.0863 0.364, 0.489 -0.89
PL/J f 0.488 0.0215   12 0.0062 0.0441 0.449, 0.513 1.1
PL/J m 0.493 0.0257   8 0.0091 0.0523 0.455, 0.538 1.01
SJL/J f 0.394 0.0242   8 0.00857 0.0616 0.356, 0.422 -1.27
SJL/J m 0.401 0.0336   12 0.00971 0.0839 0.342, 0.452 -0.95
SM/J f 0.518 0.0344   14 0.00921 0.0665 0.446, 0.564 1.86
SM/J m 0.538 0.0299   10 0.00946 0.0556 0.499, 0.583 1.97
SPRET/EiJ f 0.4 0.0306   5 0.0137 0.0766 0.37, 0.45 -1.12
SWR/J f 0.442 0.0209   10 0.0066 0.0472 0.396, 0.471 -0.06
SWR/J m 0.419 0.02   10 0.00632 0.0477 0.396, 0.454 -0.57


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.4421 0.0122 0.4661 0.4181
129S1/SvImJ m 0.4018 0.0122 0.4258 0.3778
A/J f 0.4575 0.0136 0.4843 0.4307
A/J m 0.4446 0.0122 0.4686 0.4206
AKR/J f 0.4587 0.0128 0.4839 0.4334
AKR/J m 0.446 0.0136 0.4728 0.4192
BALB/cByJ f 0.4637 0.0122 0.4877 0.4397
BALB/cByJ m 0.5101 0.0122 0.5341 0.4861
BTBR T+ Itpr3tf/J f 0.4737 0.0111 0.4955 0.4518
BTBR T+ Itpr3tf/J m 0.4712 0.0157 0.5021 0.4402
C3H/HeJ f 0.4168 0.0122 0.4408 0.3928
C3H/HeJ m 0.4174 0.0136 0.4442 0.3906
C57BL/6J f 0.4829 0.0136 0.5097 0.4561
C57BL/6J m 0.5175 0.0122 0.5415 0.4935
C57L/J f 0.4553 0.0122 0.4793 0.4313
C57L/J m 0.4724 0.0136 0.4992 0.4456
C58/J f 0.4566 0.0128 0.4818 0.4313
C58/J m 0.4572 0.0122 0.4812 0.4332
CAST/EiJ f 0.3721 0.0128 0.3974 0.3469
CAST/EiJ m 0.3643 0.0128 0.3896 0.3391
DBA/2J f 0.408 0.0122 0.432 0.384
DBA/2J m 0.3975 0.0136 0.4243 0.3707
FVB/NJ f 0.465 0.0122 0.489 0.441
FVB/NJ m 0.459 0.0116 0.4818 0.4362
MOLF/EiJ f 0.3975 0.0136 0.4243 0.3707
MOLF/EiJ m 0.3917 0.0157 0.4226 0.3607
NOD/ShiLtJ f 0.5042 0.0111 0.526 0.4823
NOD/ShiLtJ m 0.4762 0.0111 0.498 0.4543
NZB/BlNJ f 0.4412 0.0157 0.4721 0.4102
NZB/BlNJ m 0.4311 0.0111 0.453 0.4092
PERA/EiJ f 0.3927 0.0122 0.4167 0.3687
PERA/EiJ m 0.4041 0.0111 0.426 0.3822
PL/J f 0.4878 0.0111 0.5097 0.466
PL/J m 0.4926 0.0136 0.5194 0.4658
SJL/J f 0.3936 0.0136 0.4204 0.3668
SJL/J m 0.4008 0.0111 0.4227 0.379
SM/J f 0.5179 0.0103 0.5381 0.4976
SM/J m 0.5379 0.0122 0.5619 0.5139
SWR/J f 0.4419 0.0122 0.4659 0.4179
SWR/J m 0.4194 0.0122 0.4434 0.3954


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.422 0.0086 0.4389 0.405
A/J both 0.4511 0.0091 0.469 0.4331
AKR/J both 0.4523 0.0094 0.4707 0.4339
BALB/cByJ both 0.4869 0.0086 0.5038 0.47
BTBR T+ Itpr3tf/J both 0.4724 0.0096 0.4914 0.4535
C3H/HeJ both 0.4171 0.0091 0.4351 0.3991
C57BL/6J both 0.5002 0.0091 0.5182 0.4822
C57L/J both 0.4638 0.0091 0.4818 0.4459
C58/J both 0.4569 0.0089 0.4743 0.4395
CAST/EiJ both 0.3682 0.0091 0.3861 0.3504
DBA/2J both 0.4028 0.0091 0.4207 0.3848
FVB/NJ both 0.462 0.0084 0.4786 0.4454
MOLF/EiJ both 0.3946 0.0104 0.415 0.3741
NOD/ShiLtJ both 0.4902 0.0079 0.5056 0.4747
NZB/BlNJ both 0.4361 0.0096 0.4551 0.4172
PERA/EiJ both 0.3984 0.0082 0.4146 0.3822
PL/J both 0.4902 0.0088 0.5075 0.4729
SJL/J both 0.3972 0.0088 0.4145 0.3799
SM/J both 0.5279 0.008 0.5436 0.5122
SWR/J both 0.4307 0.0086 0.4476 0.4137




  GWAS USING LINEAR MIXED MODELS