Project measure / variable:   Odet1   sperm_abnormal_head

ID, description, units MPD:53742   sperm_abnormal_head   percentage of sperm with abnormal head shape   [%]  
Data set, strains Odet1   inbred w/CC8   8 strains     sex: m     age: 10-66wks
Procedure histopathology
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  STRAIN COMPARISON PLOT
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Odet1 - percentage of sperm with abnormal head shape



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means15.0   %
Median of the strain means17.1   %
SD of the strain means± 5.67
Coefficient of variation (CV)0.377
Min–max range of strain means7.17   –   20.9   %
Mean sample size per strain13.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 2965.841 423.6916 9.7406 < 0.0001
Residuals 103 4480.2558 43.4976


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 15.4 7.03   17 1.71 0.458 3.6, 29.9 0.07
A/J m 18.7 6.28   14 1.68 0.335 6.3, 27.6 0.65
C57BL/6J m 19.7 7.13   11 2.15 0.361 11.8, 32.6 0.83
CAST/EiJ m 20.9 6.44   10 2.04 0.308 13.6, 31.4 1.04
NOD/ShiLtJ m 19.8 9.12   10 2.88 0.46 10.8, 41.4 0.84
NZO/HlLtJ m 10.5 6.66   19 1.53 0.633 2.7, 23.2 -0.8
PWK/PhJ m 7.17 4.86   12 1.4 0.677 1.8, 15.0 -1.38
WSB/EiJ m 7.96 5.36   18 1.26 0.674 1.4, 15.8 -1.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 15.3588 1.5996 18.5312 12.1864
A/J m 18.7214 1.7627 22.2173 15.2256
C57BL/6J m 19.7273 1.9885 23.6711 15.7835
CAST/EiJ m 20.93 2.0856 25.0663 16.7937
NOD/ShiLtJ m 19.82 2.0856 23.9563 15.6837
NZO/HlLtJ m 10.5158 1.5131 13.5166 7.515
PWK/PhJ m 7.175 1.9039 10.9509 3.3991
WSB/EiJ m 7.9556 1.5545 11.0386 4.8725




  GWAS USING LINEAR MIXED MODELS