Project measure / variable:   Ferris1   alveolar_damage

ID, description, units MPD:47612   alveolar_damage   virus-induced alveolar damage, day 4 post-infection (score 0-3)   [score]  
influenza A (H1N1) virus study
Data set, strains Ferris1   CC pre w/par   161 strains     sex: f     age: 8-16wks
Procedure histopathology
Ontology mappings

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  STRAIN COMPARISON PLOT
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Ferris1 - virus-induced alveolar damage, day 4 post-infection (score 0-3)



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested161 strains
Mean of the strain means0.367   score
Median of the strain means0.250   score
SD of the strain means± 0.425
Coefficient of variation (CV)1.16
Min–max range of strain means0   –   2.00   score
Mean sample size per strain1.1   mice


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.667 0.289   3 0.167 0.433 0.5, 1.0 0.71
A/J f 0.5 0.5   3 0.289 1.0 0.31
C57BL/6J f 0.0 0.0   3 0.0 0.0 -0.86
CAST/EiJ f 0.333 0.289   3 0.167 0.866 -0.08
NOD/ShiLtJ f 0.333 0.289   3 0.167 0.866 -0.08
NZO/HlLtJ f 0.0 0.0   3 0.0 0.0 -0.86
PreCC1009/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC1057/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC1112/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC1114/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC1119/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC113/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC1190/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 2.08
PreCC1234/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC1237/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC1246/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC1258/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC1339/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC1401/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC1427/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC1516/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC1519/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 1.49
PreCC1524/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC1566/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC157/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC1626/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC1635/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC1639/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC166/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC167/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC181/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC2075/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC219/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC220/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC2291/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC2417/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC2489/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 3.84
PreCC2558/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC289/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC291/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC3007/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC3009/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC3011/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC3018/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC3019/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3030/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3041/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC3046/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 1.49
PreCC305/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 1.49
PreCC3061/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3066/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC3067/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC3076/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC3078/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC3080/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC3087/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3091/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3118/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC3130/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC3154/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC3168/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3181/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC3207/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3232/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC3252/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC3289/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 1.49
PreCC3291/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC3358/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC3370/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3389/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC3401/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3410/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3415/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC3426/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3431/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3443/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 3.84
PreCC3467/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC3489/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC3513/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC3515/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3528/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC3548/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC3549/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC3564/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 1.49
PreCC3571/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3584/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC3594/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC3612/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC381/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC3/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC4010/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 1.49
PreCC4078/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC4251/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC4285/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC4390/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC4409/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC4587/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC462/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC4650/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC467/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC477/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC489/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC5019/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 1.49
PreCC5030/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5046/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC5049/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC5061/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5066/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5067/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5087/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5091/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC5118/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 1.49
PreCC5130/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5140/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5154/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC5156/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC5164/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 1.49
PreCC5168/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5180/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5181/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5232/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC5291/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 3.25
PreCC5308/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5344/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5358/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5389/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC538/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5401/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 2.08
PreCC5410/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC5415/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5454/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 1.49
PreCC5480/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC5489/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 2.66
PreCC549/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC5515/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5516/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC5528/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 1.49
PreCC5546/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 2.08
PreCC5549/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC555/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 1.49
PreCC5571/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 2.08
PreCC559/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC5612/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC652/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC667/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC692/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC699/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC70/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC739/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 1.49
PreCC780/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC792/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PreCC801/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC820/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC822/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 0.31
PreCC867/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC900/Unc f 0.0 0.0   1   0.0 0.0 -0.86
PreCC914/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC91/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 0.9
PreCC941/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -0.28
PWK/PhJ f 0.333 0.289   3 0.167 0.866 -0.08
WSB/EiJ f 0.167 0.289   3 0.167 1.73 -0.47




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA