Phenotype measure:   DiCurzio1   lipoid_presence

ID, description, units MPD:36615   lipoid_presence   adrenal glands, presence of lipoid structures in females (0=none; 1=outside X-zone; 2=within X-zone)   [score]
Data set, strains DiCurzio1   BXD w/par   66 strains     sex: f     age: 7-10wks*
Procedure histopathology
Ontology mappings

  STRAIN COMPARISON PLOT
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DiCurzio1 - adrenal glands, presence of lipoid structures in females (0=none; 1=outside X-zone; 2=within X-zone)



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested66 strains
Mean of the strain means0.644   score
Median of the strain means0.584   score
SD of the strain means± 0.494
Coefficient of variation (CV)0.767
Min–max range of strain means0   –   2.00   score
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 64 60.0912 0.9389 1.9187 0.0003
Residuals 209 102.2738 0.4893


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100/RwwJ f 1.5 1.0   4 0.5 0.667 1.73
BXD11/TyJ f 0.667 1.15   3 0.667 1.73 0.05
BXD12/TyJ f 1.0 1.15   4 0.577 1.15 0.72
BXD13/TyJ f 0.5 0.577   4 0.289 1.15 -0.29
BXD14/TyJ f 0.5 1.0   4 0.5 2.0 -0.29
BXD15/TyJ f 0.0 0.0   4 0.0 0.0 -1.3
BXD16/TyJ f 1.0 1.15   4 0.577 1.15 0.72
BXD18/TyJ f 0.857 0.378   7 0.143 0.441 0.43
BXD19/TyJ f 0.0 0.0   4 0.0 0.0 -1.3
BXD1/TyJ f 0.0 0.0   4 0.0 0.0 -1.3
BXD20/TyJ f 1.0 0.816   4 0.408 0.816 0.72
BXD21/TyJ f 0.75 0.957   4 0.479 1.28 0.21
BXD24/TyJ-Cep290rd16/J f 0.5 1.0   4 0.5 2.0 -0.29
BXD27/TyJ f 0.5 0.926   8 0.327 1.85 -0.29
BXD28/TyJ f 1.0 0.0   3 0.0 0.0 1.0, 1.0 0.72
BXD29-Tlr4lps-2J/J f 0.0 0.0   3 0.0 0.0 -1.3
BXD2/TyJ f 0.75 0.957   4 0.479 1.28 0.21
BXD31/TyJ f 0.0 0.0   1   0.0 0.0 -1.3
BXD32/TyJ f 0.5 0.577   4 0.289 1.15 -0.29
BXD33/TyJ f 1.0 1.15   4 0.577 1.15 0.72
BXD34/TyJ f 0.5 0.577   4 0.289 1.15 -0.29
BXD36/TyJ f 0.875 0.354   8 0.125 0.404 0.47
BXD38/TyJ f 0.5 1.0   4 0.5 2.0 -0.29
BXD39/TyJ f 0.0 0.0   4 0.0 0.0 -1.3
BXD40/TyJ f 2.0 0.0   2   0.0 0.0 2.0, 2.0 2.74
BXD42/TyJ f 1.12 0.354   8 0.125 0.314 1.0, 2.0 0.96
BXD43/RwwJ f 1.0 0.816   4 0.408 0.816 0.72
BXD44/RwwJ f 0.0 0.0   4 0.0 0.0 -1.3
BXD45/RwwJ f 0.5 1.0   4 0.5 2.0 -0.29
BXD48a/RwwJ f 0.0 0.0   4 0.0 0.0 -1.3
BXD48/RwwJ f 0.0 0.0   8 0.0 0.0 -1.3
BXD50/RwwJ f 0.5 1.0   4 0.5 2.0 -0.29
BXD51/RwwJ f 1.0 0.0   4 0.0 0.0 1.0, 1.0 0.72
BXD55/RwwJ f 0.0 0.0   4 0.0 0.0 -1.3
BXD56/RwwJ f 0.5 0.577   4 0.289 1.15 -0.29
BXD60/RwwJ f 0.0 0.0   6 0.0 0.0 -1.3
BXD61/RwwJ f 0.0 0.0   2   0.0 0.0 -1.3
BXD62/RwwJ f 0.75 0.5   4 0.25 0.667 0.21
BXD63/RwwJ f 0.0 0.0   4 0.0 0.0 -1.3
BXD65a/RwwJ f 1.0 1.15   4 0.577 1.15 0.72
BXD65b/RwwJ f 1.75 0.5   4 0.25 0.286 1.0, 2.0 2.24
BXD65/RwwJ f 0.5 1.0   4 0.5 2.0 -0.29
BXD66/RwwJ f 0.5 1.0   4 0.5 2.0 -0.29
BXD67/RwwJ f 1.0 0.0   4 0.0 0.0 1.0, 1.0 0.72
BXD68/RwwJ f 0.5 1.0   4 0.5 2.0 -0.29
BXD69/RwwJ f 0.75 0.5   4 0.25 0.667 0.21
BXD6/TyJ f 0.0 0.0   4 0.0 0.0 -1.3
BXD70/RwwJ f 0.75 0.5   4 0.25 0.667 0.21
BXD71/RwwJ f 1.0 1.15   4 0.577 1.15 0.72
BXD73a/RwwJ f 1.0 1.15   4 0.577 1.15 0.72
BXD73/RwwJ f 0.333 0.816   6 0.333 2.45 -0.63
BXD75/RwwJ f 1.0 0.0   4 0.0 0.0 1.0, 1.0 0.72
BXD77/RwwJ f 1.0 0.0   2   0.0 0.0 1.0, 1.0 0.72
BXD83/RwwJ f 1.5 1.0   4 0.5 0.667 1.73
BXD84/RwwJ f 1.25 0.957   4 0.479 0.766 1.23
BXD85/RwwJ f 0.5 0.577   4 0.289 1.15 -0.29
BXD86/RwwJ f 0.0 0.0   4 0.0 0.0 -1.3
BXD87/RwwJ f 1.0 1.15   4 0.577 1.15 0.72
BXD89/RwwJ f 0.5 0.577   4 0.289 1.15 -0.29
BXD8/TyJ f 0.667 1.15   3 0.667 1.73 0.05
BXD90/RwwJ f 1.25 0.5   4 0.25 0.4 1.0, 2.0 1.23
BXD98/RwwJ f 0.0 0.0   2   0.0 0.0 -1.3
BXD99/RwwJ f 1.5 0.577   4 0.289 0.385 1.0, 2.0 1.73
BXD9/TyJ f 0.0 0.0   4 0.0 0.0 -1.3
C57BL/6J f 1.0 1.0   5 0.447 1.0 0.72
DBA/2J f 1.0 0.0   6 0.0 0.0 1.0, 1.0 0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100/RwwJ f 1.5 0.3498 2.1895 0.8105
BXD11/TyJ f 0.6667 0.4039 1.4629 -0.1295
BXD12/TyJ f 1.0 0.3498 1.6895 0.3105
BXD13/TyJ f 0.5 0.3498 1.1895 -0.1895
BXD14/TyJ f 0.5 0.3498 1.1895 -0.1895
BXD15/TyJ f 0.0 0.3498 0.6895 -0.6895
BXD16/TyJ f 1.0 0.3498 1.6895 0.3105
BXD18/TyJ f 0.8571 0.2644 1.3784 0.3359
BXD19/TyJ f 0.0 0.3498 0.6895 -0.6895
BXD1/TyJ f 0.0 0.3498 0.6895 -0.6895
BXD20/TyJ f 1.0 0.3498 1.6895 0.3105
BXD21/TyJ f 0.75 0.3498 1.4395 0.0605
BXD24/TyJ-Cep290rd16/J f 0.5 0.3498 1.1895 -0.1895
BXD27/TyJ f 0.5 0.2473 0.9876 0.0124
BXD28/TyJ f 1.0 0.4039 1.7962 0.2038
BXD29-Tlr4lps-2J/J f 0.0 0.4039 0.7962 -0.7962
BXD2/TyJ f 0.75 0.3498 1.4395 0.0605
BXD32/TyJ f 0.5 0.3498 1.1895 -0.1895
BXD33/TyJ f 1.0 0.3498 1.6895 0.3105
BXD34/TyJ f 0.5 0.3498 1.1895 -0.1895
BXD36/TyJ f 0.875 0.2473 1.3626 0.3874
BXD38/TyJ f 0.5 0.3498 1.1895 -0.1895
BXD39/TyJ f 0.0 0.3498 0.6895 -0.6895
BXD40/TyJ f 2.0 0.4946 2.9751 1.0249
BXD42/TyJ f 1.125 0.2473 1.6126 0.6374
BXD43/RwwJ f 1.0 0.3498 1.6895 0.3105
BXD44/RwwJ f 0.0 0.3498 0.6895 -0.6895
BXD45/RwwJ f 0.5 0.3498 1.1895 -0.1895
BXD48a/RwwJ f 0.0 0.3498 0.6895 -0.6895
BXD48/RwwJ f 0.0 0.2473 0.4876 -0.4876
BXD50/RwwJ f 0.5 0.3498 1.1895 -0.1895
BXD51/RwwJ f 1.0 0.3498 1.6895 0.3105
BXD55/RwwJ f 0.0 0.3498 0.6895 -0.6895
BXD56/RwwJ f 0.5 0.3498 1.1895 -0.1895
BXD60/RwwJ f 0.0 0.2856 0.563 -0.563
BXD61/RwwJ f 0.0 0.4946 0.9751 -0.9751
BXD62/RwwJ f 0.75 0.3498 1.4395 0.0605
BXD63/RwwJ f 0.0 0.3498 0.6895 -0.6895
BXD65a/RwwJ f 1.0 0.3498 1.6895 0.3105
BXD65b/RwwJ f 1.75 0.3498 2.4395 1.0605
BXD65/RwwJ f 0.5 0.3498 1.1895 -0.1895
BXD66/RwwJ f 0.5 0.3498 1.1895 -0.1895
BXD67/RwwJ f 1.0 0.3498 1.6895 0.3105
BXD68/RwwJ f 0.5 0.3498 1.1895 -0.1895
BXD69/RwwJ f 0.75 0.3498 1.4395 0.0605
BXD6/TyJ f 0.0 0.3498 0.6895 -0.6895
BXD70/RwwJ f 0.75 0.3498 1.4395 0.0605
BXD71/RwwJ f 1.0 0.3498 1.6895 0.3105
BXD73a/RwwJ f 1.0 0.3498 1.6895 0.3105
BXD73/RwwJ f 0.3333 0.2856 0.8963 -0.2297
BXD75/RwwJ f 1.0 0.3498 1.6895 0.3105
BXD77/RwwJ f 1.0 0.4946 1.9751 0.0249
BXD83/RwwJ f 1.5 0.3498 2.1895 0.8105
BXD84/RwwJ f 1.25 0.3498 1.9395 0.5605
BXD85/RwwJ f 0.5 0.3498 1.1895 -0.1895
BXD86/RwwJ f 0.0 0.3498 0.6895 -0.6895
BXD87/RwwJ f 1.0 0.3498 1.6895 0.3105
BXD89/RwwJ f 0.5 0.3498 1.1895 -0.1895
BXD8/TyJ f 0.6667 0.4039 1.4629 -0.1295
BXD90/RwwJ f 1.25 0.3498 1.9395 0.5605
BXD98/RwwJ f 0.0 0.4946 0.9751 -0.9751
BXD99/RwwJ f 1.5 0.3498 2.1895 0.8105
BXD9/TyJ f 0.0 0.3498 0.6895 -0.6895
C57BL/6J f 1.0 0.3128 1.6167 0.3833
DBA/2J f 1.0 0.2856 1.563 0.437




  GWAS USING LINEAR MIXED MODELS