Project measure / variable:   Odet1   seminif_germ_loss

ID, description, units MPD:53726   seminif_germ_loss   number of seminiferous tubules with germ cell loss, transverse section   [n]  
Data set, strains Odet1   inbred w/CC8   8 strains     sex: m     age: 10-66wks
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  STRAIN COMPARISON PLOT
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Odet1 - number of seminiferous tubules with germ cell loss, transverse section



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means18.0   n
Median of the strain means17.4   n
SD of the strain means± 13.6
Coefficient of variation (CV)0.756
Min–max range of strain means2.68   –   42.4   n
Mean sample size per strain17.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 22461.0567 3208.7224 3.2017 0.0036
Residuals 133 133291.0852 1002.1886


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 5.04 19.8   25 3.97 3.93 -0.95
A/J m 18.3 30.8   26 6.05 1.68 0.02
C57BL/6J m 6.58 5.04   12 1.45 0.765 -0.84
CAST/EiJ m 2.68 2.38   19 0.546 0.887 -1.13
NOD/ShiLtJ m 30.2 60.2   13 16.7 1.99 1.0, 187.0 0.89
NZO/HlLtJ m 22.6 33.1   14 8.85 1.47 1.0, 122.0 0.34
PWK/PhJ m 16.4 49.1   15 12.7 2.99 -0.12
WSB/EiJ m 42.4 22.6   17 5.48 0.533 15.0, 101.0 1.79


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 5.04 6.3315 17.5634 0.0
A/J m 18.3462 6.2085 30.6264 6.0659
C57BL/6J m 6.5833 9.1387 24.6593 0.0
CAST/EiJ m 2.6842 7.2627 17.0495 0.0
NOD/ShiLtJ m 30.2308 8.7802 47.5976 12.8639
NZO/HlLtJ m 22.5714 8.4608 39.3065 5.8363
PWK/PhJ m 16.4 8.1739 32.5676 0.2324
WSB/EiJ m 42.3529 7.678 57.5398 27.1661




  GWAS USING LINEAR MIXED MODELS