Project measure / variable:   Odet1   sperm_broken_tail

ID, description, units MPD:53744   sperm_broken_tail   percentage of sperm with broken tails   [%]  
Data set, strains Odet1   inbred w/CC8   8 strains     sex: m     age: 10-66wks
Procedure histopathology
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  STRAIN COMPARISON PLOT
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Odet1 - percentage of sperm with broken tails



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means6.19   %
Median of the strain means6.30   %
SD of the strain means± 1.08
Coefficient of variation (CV)0.174
Min–max range of strain means3.88   –   7.28   %
Mean sample size per strain13.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 94.1649 13.4521 0.9217 0.493
Residuals 103 1503.2623 14.5948


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 6.3 3.01   17 0.729 0.477 3.2, 15.0 0.1
A/J m 6.92 3.95   14 1.06 0.571 0.6, 12.6 0.67
C57BL/6J m 5.81 2.98   11 0.897 0.512 1.3, 10.9 -0.35
CAST/EiJ m 6.3 2.69   10 0.851 0.427 1.9, 11.5 0.1
NOD/ShiLtJ m 3.88 3.26   10 1.03 0.84 0.3, 8.8 -2.15
NZO/HlLtJ m 5.94 4.67   19 1.07 0.787 0.9, 16.1 -0.23
PWK/PhJ m 7.11 4.24   12 1.22 0.597 1.8, 16.0 0.85
WSB/EiJ m 7.28 4.3   18 1.01 0.591 0.6, 13.3 1.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 6.3 0.9266 8.1376 4.4624
A/J m 6.9214 1.021 8.9464 4.8965
C57BL/6J m 5.81 1.1519 8.0945 3.5255
CAST/EiJ m 6.3 1.2081 8.696 3.904
NOD/ShiLtJ m 3.88 1.2081 6.276 1.484
NZO/HlLtJ m 5.9368 0.8764 7.6751 4.1986
PWK/PhJ m 7.1083 1.1028 9.2955 4.9211
WSB/EiJ m 7.2778 0.9005 9.0636 5.4919




  GWAS USING LINEAR MIXED MODELS