Phenotype measure:   Ferris1   airway_inflam

ID, description, units MPD:47607   airway_inflam   virus-induced airway inflammation, day 4 post-infection (score 0-3)   [score]
influenza A (H1N1) virus study
Data set, strains Ferris1   CC pre w/par   161 strains     sex: f     age: 8-16wks
Procedure histopathology
Ontology mappings

  STRAIN COMPARISON PLOT
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Ferris1 - virus-induced airway inflammation, day 4 post-infection (score 0-3)



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested161 strains
Mean of the strain means1.47   score
Median of the strain means1.50   score
SD of the strain means± 0.695
Coefficient of variation (CV)0.473
Min–max range of strain means0   –   2.88   score
Mean sample size per strain1.1   mice


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.67 0.577   3 0.333 0.217 2.0, 3.0 1.73
A/J f 1.17 0.577   3 0.333 0.495 0.5, 1.5 -0.43
C57BL/6J f 1.0 0.866   3 0.5 0.866 0.5, 2.0 -0.67
CAST/EiJ f 0.667 0.289   3 0.167 0.433 0.5, 1.0 -1.15
NOD/ShiLtJ f 1.33 0.764   3 0.441 0.573 0.5, 2.0 -0.2
NZO/HlLtJ f 0.5 0.0   3 0.0 0.0 0.5, 0.5 -1.39
PreCC1009/Unc f 2.75 0.0   1   0.0 0.0 2.75, 2.75 1.84
PreCC1057/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC1112/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC1114/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -1.75
PreCC1119/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC113/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -1.75
PreCC1190/Unc f 1.12 0.0   1   0.0 0.0 1.12, 1.12 -0.5
PreCC1234/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.67
PreCC1237/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC1246/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC1258/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC1339/Unc f 2.5 0.0   1   0.0 0.0 2.5, 2.5 1.48
PreCC1401/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC1427/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 -1.39
PreCC1516/Unc f 2.75 0.0   1   0.0 0.0 2.75, 2.75 1.84
PreCC1519/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC1524/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 -1.03
PreCC1566/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC157/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC1626/Unc f 1.12 0.0   1   0.0 0.0 1.12, 1.12 -0.5
PreCC1635/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC1639/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC166/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC167/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC181/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC2075/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC219/Unc f 0.0 0.0   1   0.0 0.0 -2.11
PreCC220/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC2291/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 -1.39
PreCC2417/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC2489/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC2558/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC289/Unc f 2.5 0.0   1   0.0 0.0 2.5, 2.5 1.48
PreCC291/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC3007/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.67
PreCC3009/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC3011/Unc f 2.5 0.0   1   0.0 0.0 2.5, 2.5 1.48
PreCC3018/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC3019/Unc f 2.75 0.0   1   0.0 0.0 2.75, 2.75 1.84
PreCC3030/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC3041/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC3046/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC305/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC3061/Unc f 0.0 0.0   1   0.0 0.0 -2.11
PreCC3066/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 -1.03
PreCC3067/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC3076/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.67
PreCC3078/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 -1.39
PreCC3080/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC3087/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC3091/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC3118/Unc f 2.5 0.0   1   0.0 0.0 2.5, 2.5 1.48
PreCC3130/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC3154/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 -1.03
PreCC3168/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC3181/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.67
PreCC3207/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC3232/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC3252/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.67
PreCC3289/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC3291/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC3358/Unc f 2.75 0.0   1   0.0 0.0 2.75, 2.75 1.84
PreCC3370/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC3389/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC3401/Unc f 0.0 0.0   1   0.0 0.0 -2.11
PreCC3410/Unc f 0.0 0.0   1   0.0 0.0 -2.11
PreCC3415/Unc f 2.5 0.0   1   0.0 0.0 2.5, 2.5 1.48
PreCC3426/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 -1.03
PreCC3431/Unc f 1.12 0.0   1   0.0 0.0 1.12, 1.12 -0.5
PreCC3443/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.67
PreCC3467/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC3489/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC3513/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC3515/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC3528/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC3548/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC3549/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC3564/Unc f 2.75 0.0   1   0.0 0.0 2.75, 2.75 1.84
PreCC3571/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC3584/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC3594/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC3612/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC381/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC3/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC4010/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC4078/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 -1.03
PreCC4251/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC4285/Unc f 2.12 0.0   1   0.0 0.0 2.12, 2.12 0.94
PreCC4390/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC4409/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC4587/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.67
PreCC462/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC4650/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC467/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC477/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 -1.39
PreCC489/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC5019/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC5030/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -1.75
PreCC5046/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC5049/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC5061/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 -1.39
PreCC5066/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC5067/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.67
PreCC5087/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC5091/Unc f 2.12 0.0   1   0.0 0.0 2.12, 2.12 0.94
PreCC5118/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC5130/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.67
PreCC5140/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC5154/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC5156/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC5164/Unc f 2.5 0.0   1   0.0 0.0 2.5, 2.5 1.48
PreCC5168/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC5180/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -1.75
PreCC5181/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -1.75
PreCC5232/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC5291/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC5308/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC5344/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 -1.03
PreCC5358/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -1.75
PreCC5389/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 -1.03
PreCC538/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC5401/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC5410/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -1.75
PreCC5415/Unc f 0.25 0.0   1   0.0 0.0 0.25, 0.25 -1.75
PreCC5454/Unc f 2.75 0.0   1   0.0 0.0 2.75, 2.75 1.84
PreCC5480/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC5489/Unc f 2.88 0.0   1   0.0 0.0 2.88, 2.88 2.03
PreCC549/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC5515/Unc f 0.0 0.0   1   0.0 0.0 -2.11
PreCC5516/Unc f 2.12 0.0   1   0.0 0.0 2.12, 2.12 0.94
PreCC5528/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC5546/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC5549/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC555/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC5571/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC559/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC5612/Unc f 0.875 0.0   1   0.0 0.0 0.875, 0.875 -0.85
PreCC652/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.67
PreCC667/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 -1.03
PreCC692/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.67
PreCC699/Unc f 1.75 0.0   1   0.0 0.0 1.75, 1.75 0.4
PreCC70/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC739/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 -1.03
PreCC780/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC792/Unc f 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.76
PreCC801/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 -1.39
PreCC820/Unc f 2.25 0.0   1   0.0 0.0 2.25, 2.25 1.12
PreCC822/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PreCC867/Unc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.67
PreCC900/Unc f 0.5 0.0   1   0.0 0.0 0.5, 0.5 -1.39
PreCC914/Unc f 1.25 0.0   1   0.0 0.0 1.25, 1.25 -0.31
PreCC91/Unc f 0.75 0.0   1   0.0 0.0 0.75, 0.75 -1.03
PreCC941/Unc f 1.5 0.0   1   0.0 0.0 1.5, 1.5 0.04
PWK/PhJ f 1.5 0.0   3 0.0 0.0 1.5, 1.5 0.04
WSB/EiJ f 1.17 0.289   3 0.167 0.247 1.0, 1.5 -0.43




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.