MPD: Measures involving colony observation

Measures involving colony observation

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Ankra-Badu1:1	Ankra-Badu1	colony observation	(none)	fraternal litter size at day 12 after birth [n] DAY12 21201	QTL population		both	2wks	N=502	2009

Attie2:14	Attie2	colony observation	high-fat high-sucrose diet	number of days on diet [n] diet_days 110631	DO population		both	4-26wks	N=242	2018

Bennett2:1	Bennett2	colony observation	(none)	mouse appearance description [designation] appearance 36901 categorical	ILSXISS		f			2005

Brockmann1:1	Brockmann1	colony observation	(none)	number of offspring per litter: 3 classes [n] pupsize 21301	QTL population		both	6wks	N=138	2009

Brockmann1:21	Brockmann1	colony observation	(none)	number of offspring per litter: 5 classes [n] pupsize_b 21501	QTL population		both	6wks	N=201	2009

Chang1:20	Chang1	colony observation	(none)	animal age at test (local parameter) [wks] age 15720	inbred	17	both		N=15	2008

Chesler2:28	Chesler2	colony observation	(none)	number of mice born in first litter [n] litter_size 43441	CC diallel w/par	62	both	4wks	N=8	2011

Chesler2:29	Chesler2	colony observation	(none)	parental age at first litter [d] age_first_litter 43442	CC diallel w/par	62	both	4wks	N=8	2011

Chesler2:30	Chesler2	colony observation	(none)	time from mate to first litter [d] duration_to_litter 43443	CC diallel w/par	62	both	4wks	N=8	2011

Chesler3:41	Chesler3	colony observation	(none)	number of mice born in first litter [n] litter_size 43541	CC pre w/par	312	both	4wks	N=2	2011

Chesler3:42	Chesler3	colony observation	(none)	parental age at first litter [d] age_first_litter 43542	CC pre w/par	312	both	4wks	N=2	2011

Chesler3:43	Chesler3	colony observation	(none)	time from mate to first litter [d] duration_to_litter 43543	CC pre w/par	312	both	4wks	N=2	2011

Cheverud1:69	Cheverud1	colony observation	(none)	age at necropsy (local parameter) [wks] nec_age 17899	LGXSM w/par	17	both		N=16	2004

Crabbe1:1	Crabbe1	colony observation	(none)	age (local parameter) [d] age 15401	inbred	8	both		N=34	2003

DiCurzio1:80	DiCurzio1	colony observation	(none)	age at testing (local parameter) [wks] age 36680	BXD w/par	66	both		N=4	2010

Donahue10:2	Donahue10	colony observation	(none)	mean litter interval [wks] litter_interval 41902	B6.A consomic	20	f	3-53wks	N=8	2011

Donahue10:4	Donahue10	colony observation	(none)	mean number of pups born [n] litter_size_birth 41904	B6.A consomic	20	f	3-53wks	N=8	2011

Donahue10:5	Donahue10	colony observation	(none)	mean number of pups weaned [n] litter_size_wean 41905	B6.A consomic	20	f	3-53wks	N=8	2011

Donahue10:6	Donahue10	colony observation	(none)	mean litter size divided by mean litter interval [n/wks] fecundity_index 41906	B6.A consomic	20	f	3-53wks	N=8	2011

Donahue10:7	Donahue10	colony observation	(none)	ratio of pups weaned to pups born [ratio] ratio_wean_born 41907	B6.A consomic	20	f	3-53wks	N=8	2011

Donahue10:8	Donahue10	colony observation	(none)	percent females at weaning [%] pct_Fwean 41908	B6.A consomic	20	f	3-53wks	N=8	2011

Donahue11:2	Donahue11	colony observation	(none)	mean litter interval [wks] litter_interval 42002	B6.PWD consomic	26	f	4-55wks	N=7	2011

Donahue11:3	Donahue11	colony observation	(none)	mean number of pups born [n] litter_size_birth 42003	B6.PWD consomic	26	f	4-55wks	N=11	2011

Donahue11:4	Donahue11	colony observation	(none)	mean number of pups weaned [n] litter_size_wean 42004	B6.PWD consomic	26	f	4-55wks	N=11	2011

Donahue11:5	Donahue11	colony observation	(none)	ratio of pups weaned to pups born [ratio] ratio_wean_born 42005	B6.PWD consomic	26	f	4-55wks	N=11	2011

Donahue11:6	Donahue11	colony observation	(none)	mean litter size divided by mean litter interval [n/wks] fecundity_index 42006	B6.PWD consomic	26	f	4-55wks	N=7	2011

Donahue11:7	Donahue11	colony observation	(none)	percent females at weaning [%] pct_Fwean 42007	B6.PWD consomic	26	f	4-55wks	N=11	2011

Donahue12:2	Donahue12	colony observation	(none)	mean litter interval [wks] litter_interval 42102	AXB BXA	28	f	3-50wks	N=8	2011

Donahue12:3	Donahue12	colony observation	(none)	mean number of pups born [n] litter_size_birth 42103	AXB BXA	28	f	3-50wks	N=8	2011

Donahue12:4	Donahue12	colony observation	(none)	mean number of pups weaned [n] litter_size_wean 42104	AXB BXA	28	f	3-50wks	N=8	2011

Donahue12:5	Donahue12	colony observation	(none)	ratio of pups weaned to pups born [ratio] ratio_wean_born 42105	AXB BXA	28	f	3-50wks	N=8	2011

Donahue12:6	Donahue12	colony observation	(none)	mean litter size divided by mean litter interval [n/wks] fecundity_index 42106	AXB BXA	28	f	3-50wks	N=8	2011

Donahue12:7	Donahue12	colony observation	(none)	percent females at weaning [%] pct_Fwean 42107	AXB BXA	28	f	3-50wks	N=8	2011

Donahue13:2	Donahue13	colony observation	(none)	mean litter interval [wks] litter_interval 42202	CXB	13	f	3-50wks	N=8	2011

Donahue13:3	Donahue13	colony observation	(none)	mean number of pups born [n] litter_size_birth 42203	CXB	13	f	3-50wks	N=8	2011

Donahue13:4	Donahue13	colony observation	(none)	mean number of pups weaned [n] litter_size_wean 42204	CXB	13	f	3-50wks	N=8	2011

Donahue13:5	Donahue13	colony observation	(none)	ratio of pups weaned to pups born [ratio] ratio_wean_born 42205	CXB	13	f	3-50wks	N=8	2011

Donahue13:6	Donahue13	colony observation	(none)	mean litter size divided by mean litter interval [n/wks] fecundity_index 42206	CXB	13	f	3-50wks	N=8	2011

Donahue13:7	Donahue13	colony observation	(none)	percent females at weaning [%] pct_Fwean 42207	CXB	13	f	3-50wks	N=8	2011

Donahue14:2	Donahue14	colony observation	(none)	mean litter interval [wks] litter_interval 42302	BXD	40	f	3-60wks	N=4	2011

Donahue14:3	Donahue14	colony observation	(none)	mean number of pups born [n] litter_size_birth 42303	BXD	42	f	3-60wks	N=6	2011

Donahue14:4	Donahue14	colony observation	(none)	mean number of pups weaned [n] litter_size_wean 42304	BXD	42	f	3-60wks	N=6	2011

Donahue14:5	Donahue14	colony observation	(none)	ratio of pups weaned to pups born [ratio] ratio_wean_born 42305	BXD	42	f	3-60wks	N=6	2011

Donahue14:6	Donahue14	colony observation	(none)	mean litter size divided by mean litter interval [n/wks] fecundity_index 42306	BXD	40	f	3-60wks	N=4	2011

Donahue14:7	Donahue14	colony observation	(none)	percent females at weaning [%] pct_Fwean 42307	BXD	42	f	3-60wks	N=6	2011

Donahue15:2	Donahue15	colony observation	(none)	mean litter interval [wks] litter_interval 42402	BXH	11	f	3-55wks	N=8	2011

Donahue15:3	Donahue15	colony observation	(none)	mean number of pups born [n] litter_size_birth 42403	BXH	11	f	3-55wks	N=8	2011

Donahue15:4	Donahue15	colony observation	(none)	mean number of pups weaned [n] litter_size_wean 42404	BXH	11	f	3-55wks	N=8	2011

Donahue15:5	Donahue15	colony observation	(none)	ratio of pups weaned to pups born [ratio] ratio_wean_born 42405	BXH	11	f	3-55wks	N=8	2011

Donahue15:6	Donahue15	colony observation	(none)	mean litter size divided by mean litter interval [n/wks] fecundity_index 42406	BXH	11	f	3-55wks	N=8	2011

Donahue15:7	Donahue15	colony observation	(none)	percent females at weaning [%] pct_Fwean 42407	BXH	11	f	3-55wks	N=8	2011

Donahue17:1	Donahue17	colony observation	(none)	mean litter interval [wks] litter_interval 44301	BXD	30	f	3-57wks	N=8	2011

Donahue17:2	Donahue17	colony observation	(none)	mean number of pups born [n] litter_size_birth 44302	BXD	30	f	3-57wks	N=8	2011

Donahue17:3	Donahue17	colony observation	(none)	mean number of pups weaned [n] litter_size_wean 44303	BXD	30	f	3-57wks	N=8	2011

Donahue17:4	Donahue17	colony observation	(none)	ratio of pups weaned to pups born [ratio] ratio_wean_born 44304	BXD	30	f	3-57wks	N=8	2011

Donahue17:5	Donahue17	colony observation	(none)	mean litter size divided by mean litter interval [n/wks] fecundity_index 44305	BXD	30	f	3-57wks	N=8	2011

Donahue17:6	Donahue17	colony observation	(none)	percent females at weaning [%] pct_Fwean 44306	BXD	30	f	3-57wks	N=8	2011

Donahue18:3	Donahue18	colony observation	(none)	number of pups born per litter [n] total_born 44403	inbred	15	f	6-8wks	N=17	2010

Donahue18:4	Donahue18	colony observation	(none)	percentage of pups that survived to day 3 [%] pup_survival 44404	inbred	15	f	6-8wks	N=17	2010

Donahue19:3	Donahue19	colony observation	(none)	number of pups born per litter [n] total_born 44503	B6.A consomic w/par	22	f	6-8wks	N=15	2010

Donahue19:4	Donahue19	colony observation	(none)	percentage of pups that survived to day 3 [%] pup_survival 44504	B6.A consomic w/par	22	f	6-8wks	N=15	2010

Everett1:2	Everett1	colony observation	(none)	age (local parameter) [d] age 11002	inbred	14	both		N=10	2003

GMC18:12	GMC18	colony observation	(none)	body type (1=emaciated, 2=slender, 3=normal, 4=pudgy/thick, 5=obese) [designation] body_type 56712	inbred w/CC8	8	both	17-18wks	N=12	2018

Graham2:3	Graham2	colony observation	SARS-CoV	body weight loss and survival score (1=0-5% loss, 2=5-15% loss, 3=greater than 15% loss and death) [score] weight_score 113787	CC RIX	117	f	8-10wks		2021

Hadsell1:1	Hadsell1	colony observation	(none)	number of pups born in second litter (biological) [n] pups_born 49401	inbred	31	f	14-18wks	N=10	2012

Hadsell1:3	Hadsell1	colony observation	(none)	number of cross-fostered pups that survived to day 8 (max=10) [n] pups_d8 49403	inbred	31	f	14-18wks	N=10	2012

Jax3:32	Jax3	colony observation	(none)	age of dam at birth of first litter [d] age_dam_lit1 14932	inbred	33	f			1991

Jax3:33	Jax3	colony observation	(none)	number of litters per dam [n] littersborn 14933	inbred	33	f	4-30wks		1991

Jax3:34	Jax3	colony observation	(none)	percent matings that were nonproductive [%] pct_nonprod 14934	inbred	33	f	4-30wks		1991

Jax3:38	Jax3	colony observation	(none)	number of mice per litter [n] mice_per_litter 14938	inbred	33	f	4-30wks		1991

Jax3:41	Jax3	colony observation	(none)	number of mice born per dam [n] miceborn 14941	inbred	33	f	4-30wks		1991

Jax3:42	Jax3	colony observation	(none)	number of mice weaned per dam [n] miceweaned 14942	inbred	33	f	4-30wks		1991

Jax3:43	Jax3	colony observation	(none)	percent pups weaned (of total born) [%] pct_wean 14943	inbred	33	f	4-30wks		1991

Jax3:48	Jax3	colony observation	(none)	percent males at weaning [%] pct_male_wean 14948	inbred	33	f	4-30wks		1991

Jax3:61	Jax3	colony observation	(none)	age at mating (local parameter) [wks] mating_age 14961	inbred	33	f			1991

Jax3:65	Jax3	colony observation	(none)	time from mating to retirement (local parameter) [wks] mating_to_retire 14965	inbred	33	f	4-30wks		1991

Jax4:1	Jax4	colony observation	(none)	coat color appearance 22001 categorical	inbred		both			2006

Jax5:1	Jax5	colony observation	(none)	total number of litters per dam [n] total_litters 31401	inbred	35	f	6-40wks	N=46	2009

Jax5:2	Jax5	colony observation	(none)	latency to first litter per dam, dam age at first litter minus age at mating [wks] latency_first_litter 31402	inbred	35	f	6-40wks	N=46	2009

Jax5:3	Jax5	colony observation	(none)	mean interval between consecutive litters per dam [d] mean_interval 31403	inbred	35	f	6-40wks	N=44	2009

Jax5:4	Jax5	colony observation	(none)	number of pups born per litter [n] born 31404	inbred	35	f	6-40wks	N=184	2009

Jax5:5	Jax5	colony observation	(none)	number of pups weaned per litter [n] wean 31405	inbred	35	f	6-40wks	N=184	2009

Jax5:6	Jax5	colony observation	(none)	wean to born ratio per litter [ratio] wean_born_ratio 31406	inbred	35	f	6-40wks	N=184	2009

Jax5:7	Jax5	colony observation	(none)	total number of pups born per dam [n] born_total 31407	inbred	35	f	6-40wks	N=46	2009

Jax5:8	Jax5	colony observation	(none)	mean number of pups born based on mean number of litters per dam [n] born_mean 31408	inbred	35	f	6-40wks	N=46	2009

Jax5:9	Jax5	colony observation	(none)	total number of pups weaned per dam [n] wean_total 31409	inbred	35	f	6-40wks	N=46	2009

Jax5:10	Jax5	colony observation	(none)	mean number of pups weaned based on mean number of litters per dam [n] wean_mean 31410	inbred	35	f	6-40wks	N=46	2009

Jax5:11	Jax5	colony observation	(none)	wean to born ratio per dam, adjusted for biological parameters [ratio] parenting_index 31411	inbred	35	f	6-40wks	N=38	2009

Jax5:12	Jax5	colony observation	(none)	total pups weaned per dam over mean interval between litters, adjusted for biological parameters [n/d] fecundity_index 31412	inbred	35	f	6-40wks	N=44	2009

Jax5:13	Jax5	colony observation	(none)	percent females weaned per dam [%] pct_female_dam 31413	inbred	35	f	6-40wks	N=46	2009

Jax5:14	Jax5	colony observation	(none)	female to male ratio per dam, adjusted for biological parameters [ratio] sex_ratio 31414	inbred	35	f	6-40wks	N=38	2009

Jax5:81	Jax5	colony observation	(none)	litter number (order) (local parameter) [n] litter_order 31481	inbred	35	f	6-40wks	N=184	2009

Jax5:82	Jax5	colony observation	(none)	age of dam at mate [wks] dam_age_mate 31482	inbred	35	f	varies	N=230	2009

Jax5:83	Jax5	colony observation	(none)	age at first litter [wks] age_first_litter 31483	inbred	35	f	varies	N=46	2009

Jax5:84	Jax5	colony observation	(none)	age of dam at birth of litter [wks] dam_age_at_litter 31484	inbred	35	f	varies	N=184	2009

Johnson1:1	Johnson1	colony observation	(none)	age of younger group (local parameter) [d] age_yng 1401	inbred	42	both		N=7	2000

Johnson1:6	Johnson1	colony observation	(none)	age of older group (local parameter) [d] age_old 1406	inbred	27	both		N=12	2000

Jones1:20	Jones1	colony observation	(none)	animal age when tested (local parameter) [wks] age 14220	inbred	18	both		N=4	2003

Karst1:1	Karst1	colony observation	(none)	litter size at day of weaning (day 21) (s ='small' mice; b = 'big' mice ) WG21 26001	QTL population		both	3wks	N=166	2011

Karst1:2	Karst1	colony observation	(none)	coat color (white = 0, black = 1) color 26002	QTL population		both	10wks	N=166	2011

Lazear1:5	Lazear1	colony observation	(none)	mean litter size after mating with two FVB/NJ females [n] litter_size 63105	CC	10	m	15-22wks	N=1	2018

Lightfoot1:80	Lightfoot1	colony observation	(none)	age at testing (local parameter) [d] age 35780	inbred	41	both		N=6	2010

Maurer1:99	Maurer1	colony observation	(none)	age at testing (local parameter) [wks] age 33299	inbred	23	m		N=42	2009

McMullan1:1	McMullan1	colony observation	(none)	age (local parameter) [mo] age_mo 60401	CC	50	f	17-72wks	N=5	2017

McMullan3:1	McMullan3	colony observation	(none)	age (local parameter) [mo] age_mo 60601	CC	43	f	20-88wks	N=4	2017

Metten2:80	Metten2	colony observation	(none)	age at test (local parameter) [d] age 19580	inbred	15	m		N=20	2005

Nelson1:9	Nelson1	colony observation	restricted diet	lifespan [d] lifespan 34109 control DR diet	ILSXISS	44	both	varies	N=5	2010

Paigen1:4	Paigen1	colony observation	(none)	age at start of diet (local parameter) [d] age 2904	inbred	41	both		N=10	2000

Paigen3:4	Paigen3	colony observation	(none)	age at start of diet (local parameter) [d] age 2804	obesity mutants	7	both		N=10	2000

Palmer1:80	Palmer1	colony observation	(none)	age at test (local parameter) [wks] age 25580	B6.A consomic w/par	19	both		N=12	2007

Palmer2:80	Palmer2	colony observation	(none)	age at test (local parameter) [wks] age 30080	B6.A consomic w/par	21	both		N=13	2008

Pletcher1:80	Pletcher1	colony observation	(none)	age at testing (local parameter) [wks] age 36080	inbred	32	m		N=17	2007

Reed1:80	Reed1	colony observation	(none)	age at testing (local parameter) [wks] age 32680	inbred	28	m		N=12	2009

Rosen1:3	Rosen1	colony observation	(none)	age (local parameter) [d] age 47803	BXD w/par	78	both	varies	N=2	2012

Rosen2:3	Rosen2	colony observation	(none)	age (local parameter) [d] age 47903	BXD w/par	71	both	varies	N=3	2012

Schonfeld1:27	Schonfeld1	colony observation	(none)	age at testing (local parameter) [wks] age 32380	inbred	11	both		N=6	2005

Schulz1:5	Schulz1	colony observation	(none)	age (local parameter) [d] age 1605	inbred	7	both		N=16	2000

Seburn1:4	Seburn1	colony observation	(none)	animal age at test (local parameter) [d] age 9204	inbred	16	both		N=8	2001

Shorter3:1	Shorter3	colony observation	(none)	number of weaned females [n] weaned_f 62301	CC diallel w/par	62	f	3wks	N=72	2018

Shorter3:2	Shorter3	colony observation	(none)	number of weaned males [n] weaned_m 62302	CC diallel w/par	62	f	3wks	N=72	2018

Shorter3:3	Shorter3	colony observation	(none)	total number weaned [n] weaned_tot 62303	CC diallel w/par	62	f	3wks	N=72	2018

Shorter3:4	Shorter3	colony observation	(none)	proportion of total weaned that are male [ratio] proportion_m 62304	CC diallel w/par	62	f	3wks	N=72	2018

Threadgill1:98	Threadgill1	colony observation	(none)	age at testing (local parameter) [wks] age 19498	inbred w/CC7	37	m		N=17	2005

Tordoff1:1	Tordoff1	colony observation	(none)	age at start of NaCl test (local parameter) [d] NaCl_age 6101	inbred	28	m		N=12	2001

Tordoff1:7	Tordoff1	colony observation	(none)	age at start of KCl test (local parameter) [d] KCl_age 6107	inbred	28	m		N=12	2001

Tordoff1:14	Tordoff1	colony observation	(none)	age at start of CaCl2 test (local parameter) [d] CaCl2_age 6114	inbred	28	m		N=12	2001

Tordoff1:20	Tordoff1	colony observation	(none)	age at start of NH4Cl test (local parameter) [d] NH4Cl_age 6120	inbred	28	m		N=12	2001

Tordoff2:5	Tordoff2	colony observation	(none)	age of mouse (local parameter) [d] age 6305	inbred	28	m		N=12	2001

Tordoff3:4	Tordoff3	colony observation	(none)	age at the start of the 1st test (water) (local parameter) [d] age 10304	inbred w/CC7	40	both		N=10	2002

Tordoff3:25	Tordoff3	colony observation	(none)	age of mouse at death (local parameter) [d] age_end 10325	inbred w/CC7	40	both		N=10	2002

Vinyard1:80	Vinyard1	colony observation	(none)	age at test (local parameter) [wks] age 30480	inbred	21	both		N=10	2009

Wahlsten1:5	Wahlsten1	colony observation	(none)	tissue quality; 0=no faults, 1=one or more faults (local parameter) [score] tissue 10805	inbred	21	both	12wks	N=10	2003

Yuan2:1	Yuan2	colony observation	(none)	median lifespan [d] lifespan_median 23201	inbred	31	both	varies		2007

Yuan2:10	Yuan2	colony observation	(none)	lifespan [d] lifespandays 23401	inbred	31	both	varies	N=31	2007

Yuan4:2	Yuan4	colony observation	(none)	age at vaginal opening (patency) [d] age_VO 25402	inbred	33	f	2-7wks	N=38	2009

Zhang1:2	Zhang1	colony observation	western diet	skin color Skin_color 27902	QTL population		f	18wks	N=266	2012

Zheng1:20	Zheng1	colony observation	(none)	animal age at test (local parameter) [wks] age 29820	inbred	61	both		N=4	2008

Other available data sets:

Data set	Procedure	What's in this data set	Panel	Sex	Age (weeks)	Year
ITP1	colony observation	Life span study. Various interventions vs. controls.	UM-HET3 population	both	various	2004-2023

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