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Measures involving colony observation
List studies
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Data set
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Ankra-Badu1
(1)
Bennett2
(1)
Brockmann1
(2)
Chang1
(1)
Chesler2
(3)
Chesler3
(3)
Cheverud1
(1)
Crabbe1
(1)
DiCurzio1
(1)
Donahue10
(6)
Donahue11
(6)
Donahue12
(6)
Donahue13
(6)
Donahue14
(6)
Donahue15
(6)
Donahue17
(6)
Donahue18
(2)
Donahue19
(2)
Everett1
(1)
Hadsell1
(2)
Jax3
(10)
Jax4
(1)
Jax5
(18)
Johnson1
(2)
Jones1
(1)
Karst1
(2)
Lazear1
(1)
Lightfoot1
(1)
Maurer1
(1)
McMullan1
(1)
McMullan3
(1)
Metten2
(1)
Nelson1
(1)
Paigen1
(1)
Paigen3
(1)
Palmer1
(1)
Palmer2
(1)
Pletcher1
(1)
Reed1
(1)
Rosen1
(1)
Rosen2
(1)
Schonfeld1
(1)
Schulz1
(1)
Seburn1
(1)
Shorter3
(4)
Threadgill1
(1)
Tordoff1
(4)
Tordoff2
(1)
Tordoff3
(2)
Vinyard1
(1)
Wahlsten1
(1)
Yuan2
(2)
Yuan4
(1)
Zhang1
(1)
Zheng1
(1)
Procedure / Protocol
Clear All
colony observation
(134)
Drug or Challenge
Clear All
(none)
(132)
restricted diet
(1)
western diet
(1)
Panel
Clear All
AXB BXA
(6)
B6.A consomic
(6)
B6.A consomic w/par
(4)
B6.PWD consomic
(6)
BXD
(12)
BXD w/par
(3)
BXH
(6)
CC
(3)
CC diallel w/par
(7)
CC pre w/par
(3)
CXB
(6)
ILSXISS
(2)
inbred
(59)
inbred w/CC7
(3)
LGXSM w/par
(1)
obesity mutants
(1)
QTL population
(6)
Sex
Clear All
both
(38)
f
(85)
m
(11)
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Data set
Procedure / Protocol
Drug or Challenge
Phenotype Measure
Panel
No. of Strains
Sex
Age
Sample Size (Avg)
Year
Ankra-Badu1:1
Ankra-Badu1
colony observation
(none)
fraternal litter size at day 12 after birth [n]
DAY12
21201
QTL population
both
2wks
N=502
2009
Bennett2:1
Bennett2
colony observation
(none)
mouse appearance description [designation]
appearance
36901
categorical
ILSXISS
f
2005
Brockmann1:1
Brockmann1
colony observation
(none)
number of offspring per litter: 3 classes [n]
pupsize
21301
QTL population
both
6wks
N=138
2009
Brockmann1:21
Brockmann1
colony observation
(none)
number of offspring per litter: 5 classes [n]
pupsize_b
21501
QTL population
both
6wks
N=201
2009
Chang1:20
Chang1
colony observation
(none)
animal age at test (local parameter) [wks]
age
15720
inbred
15
both
N=15
2008
Chesler2:41
Chesler2
colony observation
(none)
number of mice born in first litter [n]
litter_size
43441
CC diallel w/par
62
both
4wks
N=8
2011
Chesler2:42
Chesler2
colony observation
(none)
parental age at first litter [d]
age_first_litter
43442
CC diallel w/par
62
both
4wks
N=8
2011
Chesler2:43
Chesler2
colony observation
(none)
time from mate to first litter [d]
duration_to_litter
43443
CC diallel w/par
62
both
4wks
N=8
2011
Chesler3:41
Chesler3
colony observation
(none)
number of mice born in first litter [n]
litter_size
43541
CC pre w/par
299
both
4wks
N=2
2011
Chesler3:42
Chesler3
colony observation
(none)
parental age at first litter [d]
age_first_litter
43542
CC pre w/par
299
both
4wks
N=2
2011
Chesler3:43
Chesler3
colony observation
(none)
time from mate to first litter [d]
duration_to_litter
43543
CC pre w/par
299
both
4wks
N=2
2011
Cheverud1:99
Cheverud1
colony observation
(none)
age at necropsy (local parameter) [wks]
nec_age
17899
LGXSM w/par
17
both
N=16
2004
Crabbe1:1
Crabbe1
colony observation
(none)
age (local parameter) [d]
age
15401
inbred
8
both
N=34
2003
DiCurzio1:80
DiCurzio1
colony observation
(none)
age at testing (local parameter) [wks]
age
36680
BXD w/par
66
both
N=4
2010
Donahue10:2
Donahue10
colony observation
(none)
mean litter interval [wks]
litter_interval
41902
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue10:4
Donahue10
colony observation
(none)
mean number of pups born [n]
litter_size_birth
41904
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue10:5
Donahue10
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
41905
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue10:6
Donahue10
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
41906
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue10:7
Donahue10
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
41907
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue10:8
Donahue10
colony observation
(none)
percent females at weaning [%]
pct_Fwean
41908
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue11:2
Donahue11
colony observation
(none)
mean litter interval [wks]
litter_interval
42002
B6.PWD consomic
26
f
4-55wks
N=7
2011
Donahue11:3
Donahue11
colony observation
(none)
mean number of pups born [n]
litter_size_birth
42003
B6.PWD consomic
26
f
4-55wks
N=11
2011
Donahue11:4
Donahue11
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
42004
B6.PWD consomic
26
f
4-55wks
N=11
2011
Donahue11:5
Donahue11
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
42005
B6.PWD consomic
26
f
4-55wks
N=11
2011
Donahue11:6
Donahue11
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
42006
B6.PWD consomic
26
f
4-55wks
N=7
2011
Donahue11:7
Donahue11
colony observation
(none)
percent females at weaning [%]
pct_Fwean
42007
B6.PWD consomic
26
f
4-55wks
N=11
2011
Donahue12:2
Donahue12
colony observation
(none)
mean litter interval [wks]
litter_interval
42102
AXB BXA
28
f
3-50wks
N=8
2011
Donahue12:3
Donahue12
colony observation
(none)
mean number of pups born [n]
litter_size_birth
42103
AXB BXA
28
f
3-50wks
N=8
2011
Donahue12:4
Donahue12
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
42104
AXB BXA
28
f
3-50wks
N=8
2011
Donahue12:5
Donahue12
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
42105
AXB BXA
28
f
3-50wks
N=8
2011
Donahue12:6
Donahue12
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
42106
AXB BXA
28
f
3-50wks
N=8
2011
Donahue12:7
Donahue12
colony observation
(none)
percent females at weaning [%]
pct_Fwean
42107
AXB BXA
28
f
3-50wks
N=8
2011
Donahue13:2
Donahue13
colony observation
(none)
mean litter interval [wks]
litter_interval
42202
CXB
13
f
3-50wks
N=8
2011
Donahue13:3
Donahue13
colony observation
(none)
mean number of pups born [n]
litter_size_birth
42203
CXB
13
f
3-50wks
N=8
2011
Donahue13:4
Donahue13
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
42204
CXB
13
f
3-50wks
N=8
2011
Donahue13:5
Donahue13
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
42205
CXB
13
f
3-50wks
N=8
2011
Donahue13:6
Donahue13
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
42206
CXB
13
f
3-50wks
N=8
2011
Donahue13:7
Donahue13
colony observation
(none)
percent females at weaning [%]
pct_Fwean
42207
CXB
13
f
3-50wks
N=8
2011
Donahue14:2
Donahue14
colony observation
(none)
mean litter interval [wks]
litter_interval
42302
BXD
40
f
3-60wks
N=4
2011
Donahue14:3
Donahue14
colony observation
(none)
mean number of pups born [n]
litter_size_birth
42303
BXD
42
f
3-60wks
N=6
2011
Donahue14:4
Donahue14
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
42304
BXD
42
f
3-60wks
N=6
2011
Donahue14:5
Donahue14
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
42305
BXD
42
f
3-60wks
N=6
2011
Donahue14:6
Donahue14
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
42306
BXD
40
f
3-60wks
N=4
2011
Donahue14:7
Donahue14
colony observation
(none)
percent females at weaning [%]
pct_Fwean
42307
BXD
42
f
3-60wks
N=6
2011
Donahue15:2
Donahue15
colony observation
(none)
mean litter interval [wks]
litter_interval
42402
BXH
11
f
3-55wks
N=8
2011
Donahue15:3
Donahue15
colony observation
(none)
mean number of pups born [n]
litter_size_birth
42403
BXH
11
f
3-55wks
N=8
2011
Donahue15:4
Donahue15
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
42404
BXH
11
f
3-55wks
N=8
2011
Donahue15:5
Donahue15
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
42405
BXH
11
f
3-55wks
N=8
2011
Donahue15:6
Donahue15
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
42406
BXH
11
f
3-55wks
N=8
2011
Donahue15:7
Donahue15
colony observation
(none)
percent females at weaning [%]
pct_Fwean
42407
BXH
11
f
3-55wks
N=8
2011
Donahue17:1
Donahue17
colony observation
(none)
mean litter interval [wks]
litter_interval
44301
BXD
30
f
3-57wks
N=8
2011
Donahue17:2
Donahue17
colony observation
(none)
mean number of pups born [n]
litter_size_birth
44302
BXD
30
f
3-57wks
N=8
2011
Donahue17:3
Donahue17
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
44303
BXD
30
f
3-57wks
N=8
2011
Donahue17:4
Donahue17
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
44304
BXD
30
f
3-57wks
N=8
2011
Donahue17:5
Donahue17
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
44305
BXD
30
f
3-57wks
N=8
2011
Donahue17:6
Donahue17
colony observation
(none)
percent females at weaning [%]
pct_Fwean
44306
BXD
30
f
3-57wks
N=8
2011
Donahue18:3
Donahue18
colony observation
(none)
number of pups born per litter [n]
total_born
44403
inbred
15
f
6-8wks
N=17
2010
Donahue18:4
Donahue18
colony observation
(none)
percentage of pups that survived to day 3 [%]
pup_survival
44404
inbred
15
f
6-8wks
N=17
2010
Donahue19:3
Donahue19
colony observation
(none)
number of pups born per litter [n]
total_born
44503
B6.A consomic w/par
22
f
6-8wks
N=15
2010
Donahue19:4
Donahue19
colony observation
(none)
percentage of pups that survived to day 3 [%]
pup_survival
44504
B6.A consomic w/par
22
f
6-8wks
N=15
2010
Everett1:2
Everett1
colony observation
(none)
age (local parameter) [d]
age
11002
inbred
14
both
N=10
2003
Hadsell1:1
Hadsell1
colony observation
(none)
number of pups born in second litter (biological) [n]
pups_born
49401
inbred
31
f
14-18wks
N=10
2012
Hadsell1:3
Hadsell1
colony observation
(none)
number of cross-fostered pups that survived to day 8 (max=10) [n]
pups_d8
49403
inbred
31
f
14-18wks
N=10
2012
Jax3:32
Jax3
colony observation
(none)
age of dam at birth of first litter [d]
age_dam_lit1
14932
inbred
33
f
1991
Jax3:33
Jax3
colony observation
(none)
number of litters per dam [n]
littersborn
14933
inbred
33
f
4-30wks
1991
Jax3:34
Jax3
colony observation
(none)
percent matings that were nonproductive [%]
pct_nonprod
14934
inbred
33
f
4-30wks
1991
Jax3:38
Jax3
colony observation
(none)
number of mice per litter [n]
mice_per_litter
14938
inbred
33
f
4-30wks
1991
Jax3:41
Jax3
colony observation
(none)
number of mice born per dam [n]
miceborn
14941
inbred
33
f
4-30wks
1991
Jax3:42
Jax3
colony observation
(none)
number of mice weaned per dam [n]
miceweaned
14942
inbred
33
f
4-30wks
1991
Jax3:43
Jax3
colony observation
(none)
percent pups weaned (of total born) [%]
pct_wean
14943
inbred
33
f
4-30wks
1991
Jax3:48
Jax3
colony observation
(none)
percent males at weaning [%]
pct_male_wean
14948
inbred
33
f
4-30wks
1991
Jax3:61
Jax3
colony observation
(none)
age at mating (local parameter) [wks]
mating_age
14961
inbred
33
f
1991
Jax3:65
Jax3
colony observation
(none)
time from mating to retirement (local parameter) [wks]
mating_to_retire
14965
inbred
33
f
4-30wks
1991
Jax4:1
Jax4
colony observation
(none)
coat color
appearance
22001
categorical
inbred
both
2006
Jax5:1
Jax5
colony observation
(none)
total number of litters per dam [n]
total_litters
31401
inbred
35
f
6-40wks
N=46
2009
Jax5:2
Jax5
colony observation
(none)
latency to first litter per dam, dam age at first litter minus age at mating [wks]
latency_first_litter
31402
inbred
35
f
6-40wks
N=46
2009
Jax5:3
Jax5
colony observation
(none)
mean interval between consecutive litters per dam [d]
mean_interval
31403
inbred
35
f
6-40wks
N=44
2009
Jax5:4
Jax5
colony observation
(none)
number of pups born per litter [n]
born
31404
inbred
35
f
6-40wks
N=184
2009
Jax5:5
Jax5
colony observation
(none)
number of pups weaned per litter [n]
wean
31405
inbred
35
f
6-40wks
N=184
2009
Jax5:6
Jax5
colony observation
(none)
wean to born ratio per litter [ratio]
wean_born_ratio
31406
inbred
35
f
6-40wks
N=184
2009
Jax5:7
Jax5
colony observation
(none)
total number of pups born per dam [n]
born_total
31407
inbred
35
f
6-40wks
N=46
2009
Jax5:8
Jax5
colony observation
(none)
mean number of pups born based on mean number of litters per dam [n]
born_mean
31408
inbred
35
f
6-40wks
N=46
2009
Jax5:9
Jax5
colony observation
(none)
total number of pups weaned per dam [n]
wean_total
31409
inbred
35
f
6-40wks
N=46
2009
Jax5:10
Jax5
colony observation
(none)
mean number of pups weaned based on mean number of litters per dam [n]
wean_mean
31410
inbred
35
f
6-40wks
N=46
2009
Jax5:11
Jax5
colony observation
(none)
wean to born ratio per dam, adjusted for biological parameters [ratio]
parenting_index
31411
inbred
35
f
6-40wks
N=38
2009
Jax5:12
Jax5
colony observation
(none)
total pups weaned per dam over mean interval between litters, adjusted for biological parameters [n/d]
fecundity_index
31412
inbred
35
f
6-40wks
N=44
2009
Jax5:13
Jax5
colony observation
(none)
percent females weaned per dam [%]
pct_female_dam
31413
inbred
35
f
6-40wks
N=46
2009
Jax5:14
Jax5
colony observation
(none)
female to male ratio per dam, adjusted for biological parameters [ratio]
sex_ratio
31414
inbred
35
f
6-40wks
N=38
2009
Jax5:81
Jax5
colony observation
(none)
litter number (order) (local parameter) [n]
litter_order
31481
inbred
35
f
6-40wks
N=184
2009
Jax5:82
Jax5
colony observation
(none)
age of dam at mate [wks]
dam_age_mate
31482
inbred
35
f
various
N=230
2009
Jax5:83
Jax5
colony observation
(none)
age at first litter [wks]
age_first_litter
31483
inbred
35
f
various
N=46
2009
Jax5:84
Jax5
colony observation
(none)
age of dam at birth of litter [wks]
dam_age_at_litter
31484
inbred
35
f
various
N=184
2009
Johnson1:1
Johnson1
colony observation
(none)
age of younger group (local parameter) [d]
age_yng
1401
inbred
28
both
N=7
2000
Johnson1:6
Johnson1
colony observation
(none)
age of older group (local parameter) [d]
age_old
1406
inbred
21
both
N=12
2000
Jones1:20
Jones1
colony observation
(none)
animal age when tested (local parameter) [wks]
age
14220
inbred
13
both
N=4
2003
Karst1:1
Karst1
colony observation
(none)
litter size at day of weaning (day 21) (s ='small' mice; b = 'big' mice )
WG21
26001
QTL population
both
3wks
N=166
2011
Karst1:2
Karst1
colony observation
(none)
coat color (white = 0, black = 1)
color
26002
QTL population
both
10wks
N=166
2011
Lazear1:5
Lazear1
colony observation
(none)
mean litter size after mating with two FVB/NJ females [n]
litter_size
63105
CC
10
m
15-22wks
N=1
2018
Lightfoot1:80
Lightfoot1
colony observation
(none)
age at testing (local parameter) [d]
age
35780
inbred
41
both
N=6
2010
Maurer1:99
Maurer1
colony observation
(none)
age at testing (local parameter) [wks]
age
33299
inbred
23
m
N=42
2009
McMullan1:1
McMullan1
colony observation
(none)
age (local parameter) [mo]
age_mo
60401
CC
50
f
17-72wks
N=5
2017
McMullan3:1
McMullan3
colony observation
(none)
age (local parameter) [mo]
age_mo
60601
CC
43
f
20-88wks
N=4
2017
Metten2:80
Metten2
colony observation
(none)
age at test (local parameter) [d]
age
19580
inbred
15
m
N=20
2005
Nelson1:9
Nelson1
colony observation
restricted diet
lifespan [d]
lifespan
34109
control DR diet
ILSXISS
41
both
varies
N=5
2010
Paigen1:4
Paigen1
colony observation
(none)
age at start of diet (local parameter) [d]
age
2904
inbred
41
both
N=10
2000
Paigen3:4
Paigen3
colony observation
(none)
age at start of diet (local parameter) [d]
age
2804
obesity mutants
7
both
N=10
2000
Palmer1:80
Palmer1
colony observation
(none)
age at test (local parameter) [wks]
age
25580
B6.A consomic w/par
19
both
N=12
2007
Palmer2:80
Palmer2
colony observation
(none)
age at test (local parameter) [wks]
age
30080
B6.A consomic w/par
21
both
N=13
2008
Pletcher1:80
Pletcher1
colony observation
(none)
age at testing (local parameter) [wks]
age
36080
inbred
32
m
N=17
2007
Reed1:80
Reed1
colony observation
(none)
age at testing (local parameter) [wks]
age
32680
inbred
28
m
N=12
2009
Rosen1:3
Rosen1
colony observation
(none)
age (local parameter) [d]
age
47803
BXD w/par
76
both
various
N=2
2012
Rosen2:3
Rosen2
colony observation
(none)
age (local parameter) [d]
age
47903
BXD w/par
71
both
various
N=3
2012
Schonfeld1:80
Schonfeld1
colony observation
(none)
age at testing (local parameter) [wks]
age
32380
inbred
10
both
N=6
2005
Schulz1:5
Schulz1
colony observation
(none)
age (local parameter) [d]
age
1605
inbred
7
both
N=16
2000
Seburn1:4
Seburn1
colony observation
(none)
animal age at test (local parameter) [d]
age
9204
inbred
16
both
N=8
2001
Shorter3:1
Shorter3
colony observation
(none)
number of weaned females [n]
weaned_f
62301
CC diallel w/par
62
f
3wks
N=72
2018
Shorter3:2
Shorter3
colony observation
(none)
number of weaned males [n]
weaned_m
62302
CC diallel w/par
62
f
3wks
N=72
2018
Shorter3:3
Shorter3
colony observation
(none)
total number weaned [n]
weaned_tot
62303
CC diallel w/par
62
f
3wks
N=72
2018
Shorter3:4
Shorter3
colony observation
(none)
proportion of total weaned that are male [ratio]
proportion_m
62304
CC diallel w/par
62
f
3wks
N=72
2018
Threadgill1:98
Threadgill1
colony observation
(none)
age at testing (local parameter) [wks]
age
19498
inbred w/CC7
37
m
N=17
2005
Tordoff1:1
Tordoff1
colony observation
(none)
age at start of NaCl test (local parameter) [d]
NaCl_age
6101
inbred
28
m
N=12
2001
Tordoff1:7
Tordoff1
colony observation
(none)
age at start of KCl test (local parameter) [d]
KCl_age
6107
inbred
28
m
N=12
2001
Tordoff1:14
Tordoff1
colony observation
(none)
age at start of CaCl2 test (local parameter) [d]
CaCl2_age
6114
inbred
28
m
N=12
2001
Tordoff1:20
Tordoff1
colony observation
(none)
age at start of NH4Cl test (local parameter) [d]
NH4Cl_age
6120
inbred
28
m
N=12
2001
Tordoff2:5
Tordoff2
colony observation
(none)
age of mouse (local parameter) [d]
age
6305
inbred
28
m
N=12
2001
Tordoff3:4
Tordoff3
colony observation
(none)
age at the start of the 1st test (water) (local parameter) [d]
age
10304
inbred w/CC7
40
both
N=10
2002
Tordoff3:25
Tordoff3
colony observation
(none)
age of mouse at death (local parameter) [d]
age_end
10325
inbred w/CC7
40
both
N=10
2002
Vinyard1:80
Vinyard1
colony observation
(none)
age at test (local parameter) [wks]
age
30480
inbred
21
both
N=10
2009
Wahlsten1:5
Wahlsten1
colony observation
(none)
tissue quality; 0=no faults, 1=one or more faults (local parameter) [score]
tissue
10805
inbred
21
both
12wks
N=10
2003
Yuan2:1
Yuan2
colony observation
(none)
median lifespan [d]
lifespan_median
23201
inbred
31
both
varies
2007
Yuan2:10
Yuan2
colony observation
(none)
lifespan [d]
lifespandays
23401
inbred
31
both
varies
N=31
2007
Yuan4:2
Yuan4
colony observation
(none)
age at vaginal opening (patency) [d]
age_VO
25402
inbred
33
f
2-7wks
N=38
2009
Zhang1:2
Zhang1
colony observation
western diet
skin color
Skin_color
27902
QTL population
f
18wks
N=266
2012
Zheng1:20
Zheng1
colony observation
(none)
animal age at test (local parameter) [wks]
age
29820
inbred
56
both
N=4
2008
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Panel
Sex
Age (weeks)
Year
ITP1
colony observation
Life span study. Various interventions vs. controls.
UM-HET3 population
both
various
2004-2019
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