MPD: Measures involving colony observation

Measures involving colony observation

Data set	MPD ID	Procedure / Protocol	Drug or Challenge	Phenotype Measure	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Ankra-Badu1	21201	colony observation	(none)	fraternal litter size at day 12 after birth [n] DAY12	QTL population		both	2wks	N=502	2009

Bennett2	36901	colony observation	(none)	mouse appearance description [designation] appearance	ILSXISS		f			2005

Brockmann1	21301	colony observation	(none)	number of offspring per litter: 3 classes [n] pupsize	QTL population		both	6wks	N=138	2009

Brockmann1	21501	colony observation	(none)	number of offspring per litter: 5 classes [n] pupsize_b	QTL population		both	6wks	N=201	2009

Chang1	15720	colony observation	(none)	animal age at test (local parameter) [wks] age	inbred	15	both		N=15	2008

Chesler2	43441	colony observation	(none)	number of mice born in first litter [n] litter_size	CC diallel w/par	62	both	4wks	N=8	2011

Chesler2	43442	colony observation	(none)	parental age at first litter [d] age_first_litter	CC diallel w/par	62	both	4wks	N=8	2011

Chesler2	43443	colony observation	(none)	time from mate to first litter [d] duration_to_litter	CC diallel w/par	62	both	4wks	N=8	2011

Chesler3	43541	colony observation	(none)	number of mice born in first litter [n] litter_size	CC pre w/par	299	both	4wks	N=2	2011

Chesler3	43542	colony observation	(none)	parental age at first litter [d] age_first_litter	CC pre w/par	299	both	4wks	N=2	2011

Chesler3	43543	colony observation	(none)	time from mate to first litter [d] duration_to_litter	CC pre w/par	299	both	4wks	N=2	2011

Cheverud1	17899	colony observation	(none)	age at necropsy (local parameter) [wks] nec_age	LGXSM w/par	17	both		N=16	2004

Crabbe1	15401	colony observation	(none)	age (local parameter) [d] age	inbred	8	both		N=34	2003

DiCurzio1	36680	colony observation	(none)	age at testing (local parameter) [wks] age	BXD w/par	66	both		N=4	2010

Donahue10	41902	colony observation	(none)	mean litter interval [wks] litter_interval	B6.A consomic	20	f	3-53wks	N=8	2011

Donahue10	41904	colony observation	(none)	mean number of pups born [n] litter_size_birth	B6.A consomic	20	f	3-53wks	N=8	2011

Donahue10	41905	colony observation	(none)	mean number of pups weaned [n] litter_size_wean	B6.A consomic	20	f	3-53wks	N=8	2011

Donahue10	41906	colony observation	(none)	mean litter size divided by mean litter interval [n/wks] fecundity_index	B6.A consomic	20	f	3-53wks	N=8	2011

Donahue10	41907	colony observation	(none)	ratio of pups weaned to pups born [ratio] ratio_wean_born	B6.A consomic	20	f	3-53wks	N=8	2011

Donahue10	41908	colony observation	(none)	percent females at weaning [%] pct_Fwean	B6.A consomic	20	f	3-53wks	N=8	2011

Donahue11	42002	colony observation	(none)	mean litter interval [wks] litter_interval	B6.PWD consomic	26	f	4-55wks	N=7	2011

Donahue11	42003	colony observation	(none)	mean number of pups born [n] litter_size_birth	B6.PWD consomic	26	f	4-55wks	N=11	2011

Donahue11	42004	colony observation	(none)	mean number of pups weaned [n] litter_size_wean	B6.PWD consomic	26	f	4-55wks	N=11	2011

Donahue11	42005	colony observation	(none)	ratio of pups weaned to pups born [ratio] ratio_wean_born	B6.PWD consomic	26	f	4-55wks	N=11	2011

Donahue11	42006	colony observation	(none)	mean litter size divided by mean litter interval [n/wks] fecundity_index	B6.PWD consomic	26	f	4-55wks	N=7	2011

Donahue11	42007	colony observation	(none)	percent females at weaning [%] pct_Fwean	B6.PWD consomic	26	f	4-55wks	N=11	2011

Donahue12	42102	colony observation	(none)	mean litter interval [wks] litter_interval	AXB BXA	28	f	3-50wks	N=8	2011

Donahue12	42103	colony observation	(none)	mean number of pups born [n] litter_size_birth	AXB BXA	28	f	3-50wks	N=8	2011

Donahue12	42104	colony observation	(none)	mean number of pups weaned [n] litter_size_wean	AXB BXA	28	f	3-50wks	N=8	2011

Donahue12	42105	colony observation	(none)	ratio of pups weaned to pups born [ratio] ratio_wean_born	AXB BXA	28	f	3-50wks	N=8	2011

Donahue12	42106	colony observation	(none)	mean litter size divided by mean litter interval [n/wks] fecundity_index	AXB BXA	28	f	3-50wks	N=8	2011

Donahue12	42107	colony observation	(none)	percent females at weaning [%] pct_Fwean	AXB BXA	28	f	3-50wks	N=8	2011

Donahue13	42202	colony observation	(none)	mean litter interval [wks] litter_interval	CXB	13	f	3-50wks	N=8	2011

Donahue13	42203	colony observation	(none)	mean number of pups born [n] litter_size_birth	CXB	13	f	3-50wks	N=8	2011

Donahue13	42204	colony observation	(none)	mean number of pups weaned [n] litter_size_wean	CXB	13	f	3-50wks	N=8	2011

Donahue13	42205	colony observation	(none)	ratio of pups weaned to pups born [ratio] ratio_wean_born	CXB	13	f	3-50wks	N=8	2011

Donahue13	42206	colony observation	(none)	mean litter size divided by mean litter interval [n/wks] fecundity_index	CXB	13	f	3-50wks	N=8	2011

Donahue13	42207	colony observation	(none)	percent females at weaning [%] pct_Fwean	CXB	13	f	3-50wks	N=8	2011

Donahue14	42302	colony observation	(none)	mean litter interval [wks] litter_interval	BXD	40	f	3-60wks	N=4	2011

Donahue14	42303	colony observation	(none)	mean number of pups born [n] litter_size_birth	BXD	42	f	3-60wks	N=6	2011

Donahue14	42304	colony observation	(none)	mean number of pups weaned [n] litter_size_wean	BXD	42	f	3-60wks	N=6	2011

Donahue14	42305	colony observation	(none)	ratio of pups weaned to pups born [ratio] ratio_wean_born	BXD	42	f	3-60wks	N=6	2011

Donahue14	42306	colony observation	(none)	mean litter size divided by mean litter interval [n/wks] fecundity_index	BXD	40	f	3-60wks	N=4	2011

Donahue14	42307	colony observation	(none)	percent females at weaning [%] pct_Fwean	BXD	42	f	3-60wks	N=6	2011

Donahue15	42402	colony observation	(none)	mean litter interval [wks] litter_interval	BXH	11	f	3-55wks	N=8	2011

Donahue15	42403	colony observation	(none)	mean number of pups born [n] litter_size_birth	BXH	11	f	3-55wks	N=8	2011

Donahue15	42404	colony observation	(none)	mean number of pups weaned [n] litter_size_wean	BXH	11	f	3-55wks	N=8	2011

Donahue15	42405	colony observation	(none)	ratio of pups weaned to pups born [ratio] ratio_wean_born	BXH	11	f	3-55wks	N=8	2011

Donahue15	42406	colony observation	(none)	mean litter size divided by mean litter interval [n/wks] fecundity_index	BXH	11	f	3-55wks	N=8	2011

Donahue15	42407	colony observation	(none)	percent females at weaning [%] pct_Fwean	BXH	11	f	3-55wks	N=8	2011

Donahue17	44301	colony observation	(none)	mean litter interval [wks] litter_interval	BXD	30	f	3-57wks	N=8	2011

Donahue17	44302	colony observation	(none)	mean number of pups born [n] litter_size_birth	BXD	30	f	3-57wks	N=8	2011

Donahue17	44303	colony observation	(none)	mean number of pups weaned [n] litter_size_wean	BXD	30	f	3-57wks	N=8	2011

Donahue17	44304	colony observation	(none)	ratio of pups weaned to pups born [ratio] ratio_wean_born	BXD	30	f	3-57wks	N=8	2011

Donahue17	44305	colony observation	(none)	mean litter size divided by mean litter interval [n/wks] fecundity_index	BXD	30	f	3-57wks	N=8	2011

Donahue17	44306	colony observation	(none)	percent females at weaning [%] pct_Fwean	BXD	30	f	3-57wks	N=8	2011

Donahue18	44403	colony observation	(none)	number of pups born per litter [n] total_born	inbred	15	f	6-8wks	N=17	2010

Donahue18	44404	colony observation	(none)	percentage of pups that survived to day 3 [%] pup_survival	inbred	15	f	6-8wks	N=17	2010

Donahue19	44503	colony observation	(none)	number of pups born per litter [n] total_born	B6.A consomic w/par	22	f	6-8wks	N=15	2010

Donahue19	44504	colony observation	(none)	percentage of pups that survived to day 3 [%] pup_survival	B6.A consomic w/par	22	f	6-8wks	N=15	2010

Everett1	11002	colony observation	(none)	age (local parameter) [d] age	inbred	14	both		N=10	2003

Hadsell1	49401	colony observation	(none)	number of pups born in second litter (biological) [n] pups_born	inbred	31	f	14-18wks	N=10	2012

Hadsell1	49403	colony observation	(none)	number of cross-fostered pups that survived to day 8 (max=10) [n] pups_d8	inbred	31	f	14-18wks	N=10	2012

Jax3	14932	colony observation	(none)	age of dam at birth of first litter [d] age_dam_lit1	inbred	33	f			1991

Jax3	14933	colony observation	(none)	number of litters per dam [n] littersborn	inbred	33	f	4-30wks		1991

Jax3	14934	colony observation	(none)	percent matings that were nonproductive [%] pct_nonprod	inbred	33	f	4-30wks		1991

Jax3	14938	colony observation	(none)	number of mice per litter [n] mice_per_litter	inbred	33	f	4-30wks		1991

Jax3	14941	colony observation	(none)	number of mice born per dam [n] miceborn	inbred	33	f	4-30wks		1991

Jax3	14942	colony observation	(none)	number of mice weaned per dam [n] miceweaned	inbred	33	f	4-30wks		1991

Jax3	14943	colony observation	(none)	percent pups weaned (of total born) [%] pct_wean	inbred	33	f	4-30wks		1991

Jax3	14948	colony observation	(none)	percent males at weaning [%] pct_male_wean	inbred	33	f	4-30wks		1991

Jax3	14961	colony observation	(none)	age at mating (local parameter) [wks] mating_age	inbred	33	f

Jax3	14965	colony observation	(none)	time from mating to retirement (local parameter) [wks] mating_to_retire	inbred	33	f	4-30wks

Jax4	22001	colony observation	(none)	coat color appearance	inbred		both			2006

Jax5	31401	colony observation	(none)	total number of litters per dam [n] total_litters	inbred	35	f	6-40wks	N=46	2009

Jax5	31402	colony observation	(none)	latency to first litter per dam, dam age at first litter minus age at mating [wks] latency_first_litter	inbred	35	f	6-40wks	N=46	2009

Jax5	31403	colony observation	(none)	mean interval between consecutive litters per dam [d] mean_interval	inbred	35	f	6-40wks	N=44	2009

Jax5	31404	colony observation	(none)	number of pups born per litter [n] born	inbred	35	f	6-40wks	N=184	2009

Jax5	31405	colony observation	(none)	number of pups weaned per litter [n] wean	inbred	35	f	6-40wks	N=184	2009

Jax5	31406	colony observation	(none)	wean to born ratio per litter [ratio] wean_born_ratio	inbred	35	f	6-40wks	N=184	2009

Jax5	31407	colony observation	(none)	total number of pups born per dam [n] born_total	inbred	35	f	6-40wks	N=46	2009

Jax5	31408	colony observation	(none)	mean number of pups born based on mean number of litters per dam [n] born_mean	inbred	35	f	6-40wks	N=46	2009

Jax5	31409	colony observation	(none)	total number of pups weaned per dam [n] wean_total	inbred	35	f	6-40wks	N=46	2009

Jax5	31410	colony observation	(none)	mean number of pups weaned based on mean number of litters per dam [n] wean_mean	inbred	35	f	6-40wks	N=46	2009

Jax5	31411	colony observation	(none)	wean to born ratio per dam, adjusted for biological parameters [ratio] parenting_index	inbred	35	f	6-40wks	N=38	2009

Jax5	31412	colony observation	(none)	total pups weaned per dam over mean interval between litters, adjusted for biological parameters [n/d] fecundity_index	inbred	35	f	6-40wks	N=44	2009

Jax5	31413	colony observation	(none)	percent females weaned per dam [%] pct_female_dam	inbred	35	f	6-40wks	N=46	2009

Jax5	31414	colony observation	(none)	female to male ratio per dam, adjusted for biological parameters [ratio] sex_ratio	inbred	35	f	6-40wks	N=38	2009

Jax5	31481	colony observation	(none)	litter number (order) (local parameter) [n] litter_order	inbred	35	f	6-40wks	N=184	2009

Jax5	31483	colony observation	(none)	age at first litter [wks] age_first_litter	inbred	35	f	various	N=46	2009

Johnson1	1401	colony observation	(none)	age of younger group (local parameter) [d] age_yng	inbred	28	both		N=7	2000

Johnson1	1406	colony observation	(none)	age of older group (local parameter) [d] age_old	inbred	21	both		N=12	2000

Jones1	14220	colony observation	(none)	animal age when tested (local parameter) [wks] age	inbred	13	both		N=4	2003

Karst1	26001	colony observation	(none)	litter size at day of weaning (day 21) (s ='small' mice; b = 'big' mice ) WG21	QTL population		both	3wks	N=166	2011

Karst1	26002	colony observation	(none)	coat color (white = 0, black = 1) color	QTL population		both	10wks	N=166	2011

Lightfoot1	35780	colony observation	(none)	age at testing (local parameter) [d] age	inbred	41	both		N=6	2010

Maurer1	33299	colony observation	(none)	age at testing (local parameter) [wks] age	inbred	23	m		N=42	2009

McMullan1	60401	colony observation	(none)	age (local parameter) [mo] age_mo	CC	50	f	17-72wks	N=5	2017

McMullan3	60601	colony observation	(none)	age (local parameter) [mo] age_mo	CC	43	f	20-88wks	N=4	2017

Metten2	19580	colony observation	(none)	age at test (local parameter) [d] age	inbred	15	m		N=20	2005

Nelson1	34109	colony observation	restricted diet	lifespan [d] control DR diet	ILSXISS	41	both	varies	N=5	2010

Paigen1	2904	colony observation	(none)	age at start of diet (local parameter) [d] age	inbred	41	both		N=10	2000

Paigen3	2804	colony observation	(none)	age at start of diet (local parameter) [d] age	obesity mutants	7	both		N=10	2000

Palmer1	25580	colony observation	(none)	age at test (local parameter) [wks] age	B6.A consomic w/par	19	both		N=12	2007

Palmer2	30080	colony observation	(none)	age at test (local parameter) [wks] age	B6.A consomic w/par	21	both		N=13	2008

Pletcher1	36080	colony observation	(none)	age at testing (local parameter) [wks] age	inbred	32	m		N=17	2007

Reed1	32680	colony observation	(none)	age at testing (local parameter) [wks] age	inbred	28	m		N=12	2009

Rosen1	47803	colony observation	(none)	age (local parameter) [d] age	BXD w/par	76	both	various	N=2	2012

Rosen2	47903	colony observation	(none)	age (local parameter) [d] age	BXD w/par	71	both	various	N=3	2012

Schonfeld1	32380	colony observation	(none)	age at testing (local parameter) [wks] age	inbred	10	both		N=6	2005

Schulz1	1605	colony observation	(none)	age (local parameter) [d] age	inbred	7	both		N=16	2000

Seburn1	9204	colony observation	(none)	animal age at test (local parameter) [d] age	inbred	16	both		N=8	2001

Shorter3	62301	colony observation	(none)	number of weaned females [n] weaned_f	CC diallel w/par	62	f	3wks	N=72	2018

Shorter3	62302	colony observation	(none)	number of weaned males [n] weaned_m	CC diallel w/par	62	f	3wks	N=72	2018

Shorter3	62303	colony observation	(none)	total number weaned [n] weaned_tot	CC diallel w/par	62	f	3wks	N=72	2018

Shorter3	62304	colony observation	(none)	proportion of total weaned that are male [ratio] proportion_m	CC diallel w/par	62	f	3wks	N=72	2018

Threadgill1	19498	colony observation	(none)	age at testing (local parameter) [wks] age	inbred w/CC7	37	m		N=17	2005

Tordoff1	6101	colony observation	(none)	age at start of NaCl test (local parameter) [d] NaCl_age	inbred	28	m		N=12	2001

Tordoff1	6107	colony observation	(none)	age at start of KCl test (local parameter) [d] KCl_age	inbred	28	m		N=12	2001

Tordoff1	6114	colony observation	(none)	age at start of CaCl2 test (local parameter) [d] CaCl2_age	inbred	28	m		N=12	2001

Tordoff1	6120	colony observation	(none)	age at start of NH4Cl test (local parameter) [d] NH4Cl_age	inbred	28	m		N=12	2001

Tordoff2	6305	colony observation	(none)	age of mouse (local parameter) [d] age	inbred	28	m		N=12	2001

Tordoff3	10304	colony observation	(none)	age at the start of the 1st test (water) (local parameter) [d] age	inbred w/CC7	40	both		N=10	2002

Tordoff3	10325	colony observation	(none)	age of mouse at death (local parameter) [d] age_end	inbred w/CC7	40	both		N=10	2002

Vinyard1	30480	colony observation	(none)	age at test (local parameter) [wks] age	inbred	21	both		N=10	2009

Wahlsten1	10805	colony observation	(none)	tissue quality; 0=no faults, 1=one or more faults (local parameter) [score] tissue	inbred	21	both	12wks	N=10	2003

Yuan2	23201	colony observation	(none)	median lifespan [d] lifespan_median	inbred	31	both	varies		2007

Yuan2	23401	colony observation	(none)	lifespan [d] lifespandays	inbred	31	both	varies	N=31	2007

Yuan4	25402	colony observation	(none)	age at vaginal opening (patency) [d] age_VO	inbred	33	f	2-7wks	N=38	2009

Zhang1	27902	colony observation	western diet	skin color Skin_color	QTL population		f	18wks	N=266	2012

Zheng1	29820	colony observation	(none)	animal age at test (local parameter) [wks] age	inbred	56	both		N=4	2008

Other available data sets:

Data set	Procedure	What's in this data set	Panel	Sex	Age (weeks)	Year
ITP1	colony observation	Life span study. Various treatments vs. controls.	UM-HET3 population	both	max lifespan	2017