Project measure / variable:   Donahue17   litter_interval

ID, description, units MPD:44301   litter_interval   mean litter interval   [wks]  
Data set, strains Donahue17   BXD   30 strains     sex: f     age: 3-57wks
Procedure colony observation
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  STRAIN COMPARISON PLOT
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Donahue17 - mean litter interval



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested30 strains
Mean of the strain means4.88   wks
Median of the strain means4.66   wks
SD of the strain means± 0.775
Coefficient of variation (CV)0.159
Min–max range of strain means3.71   –   6.50   wks
Mean sample size per strain7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 29 121.9465 4.2051 2.8982 < 0.0001
Residuals 196 284.3825 1.4509


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD11/TyJ f 4.73 1.49   8 0.527 0.316 3.2, 7.3 -0.2
BXD12/TyJ f 6.03 2.02   7 0.762 0.334 4.2, 10.0 1.48
BXD13/TyJ f 4.11 0.651   8 0.23 0.158 3.4, 5.1 -1.0
BXD14/TyJ f 5.66 2.16   8 0.764 0.382 3.0, 9.3 1.0
BXD15/TyJ f 6.32 1.76   8 0.624 0.279 4.1, 9.0 1.85
BXD16/TyJ f 5.71 2.07   8 0.732 0.362 3.3, 9.7 1.06
BXD18/TyJ f 5.89 1.89   7 0.714 0.321 4.4, 9.7 1.3
BXD19/TyJ f 5.56 0.845   8 0.299 0.152 4.0, 7.0 0.87
BXD1/TyJ f 4.29 1.09   8 0.385 0.254 3.2, 6.8 -0.77
BXD21/TyJ f 5.26 0.89   8 0.314 0.169 4.0, 6.6 0.48
BXD22/TyJ f 4.58 0.945   8 0.334 0.207 3.5, 6.1 -0.39
BXD24/TyJ-Cep290rd16/J f 4.5 0.804   7 0.304 0.179 3.4, 5.7 -0.5
BXD27/TyJ f 5.16 1.82   7 0.687 0.352 3.4, 8.6 0.36
BXD28/TyJ f 5.05 0.983   6 0.401 0.195 3.3, 5.9 0.21
BXD29-Tlr4lps-2J/J f 4.96 0.576   8 0.203 0.116 4.1, 5.9 0.1
BXD29/Ty f 4.54 0.553   8 0.195 0.122 3.7, 5.5 -0.44
BXD2/TyJ f 4.58 0.55   8 0.194 0.12 3.7, 5.4 -0.39
BXD31/TyJ f 5.5 1.3   7 0.492 0.237 3.4, 7.1 0.79
BXD32/TyJ f 3.85 0.84   8 0.297 0.218 3.1, 5.6 -1.33
BXD33/TyJ f 4.1 0.791   8 0.28 0.193 3.4, 5.8 -1.01
BXD34/TyJ f 3.71 0.601   8 0.213 0.162 3.0, 5.0 -1.51
BXD36/TyJ f 4.15 1.01   6 0.411 0.243 3.0, 5.3 -0.95
BXD38/TyJ f 4.28 0.465   8 0.164 0.109 3.5, 5.1 -0.78
BXD39/TyJ f 5.53 1.37   8 0.485 0.248 3.0, 7.4 0.83
BXD40/TyJ f 4.11 0.53   8 0.188 0.129 3.5, 4.9 -1.0
BXD42/TyJ f 5.15 1.03   8 0.363 0.199 3.4, 6.5 0.34
BXD5/TyJ f 3.77 0.692   8 0.245 0.183 3.1, 5.0 -1.44
BXD6/TyJ f 4.53 0.191   8 0.0675 0.0422 4.3, 4.7 -0.46
BXD8/TyJ f 4.42 1.48   8 0.525 0.335 2.7, 6.5 -0.6
BXD9/TyJ f 6.5 1.61   3 0.929 0.248 5.0, 8.2 2.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD11/TyJ f 4.725 0.4259 5.5649 3.8851
BXD12/TyJ f 6.0286 0.4553 6.9264 5.1307
BXD13/TyJ f 4.1125 0.4259 4.9524 3.2726
BXD14/TyJ f 5.6625 0.4259 6.5024 4.8226
BXD15/TyJ f 6.325 0.4259 7.1649 5.4851
BXD16/TyJ f 5.7125 0.4259 6.5524 4.8726
BXD18/TyJ f 5.8857 0.4553 6.7836 4.9878
BXD19/TyJ f 5.5625 0.4259 6.4024 4.7226
BXD1/TyJ f 4.2875 0.4259 5.1274 3.4476
BXD21/TyJ f 5.2625 0.4259 6.1024 4.4226
BXD22/TyJ f 4.575 0.4259 5.4149 3.7351
BXD24/TyJ-Cep290rd16/J f 4.5 0.4553 5.3979 3.6021
BXD27/TyJ f 5.1571 0.4553 6.055 4.2593
BXD28/TyJ f 5.05 0.4918 6.0198 4.0802
BXD29-Tlr4lps-2J/J f 4.9625 0.4259 5.8024 4.1226
BXD29/Ty f 4.5375 0.4259 5.3774 3.6976
BXD2/TyJ f 4.575 0.4259 5.4149 3.7351
BXD31/TyJ f 5.5 0.4553 6.3979 4.6021
BXD32/TyJ f 3.85 0.4259 4.6899 3.0101
BXD33/TyJ f 4.1 0.4259 4.9399 3.2601
BXD34/TyJ f 3.7125 0.4259 4.5524 2.8726
BXD36/TyJ f 4.15 0.4918 5.1198 3.1802
BXD38/TyJ f 4.275 0.4259 5.1149 3.4351
BXD39/TyJ f 5.525 0.4259 6.3649 4.6851
BXD40/TyJ f 4.1125 0.4259 4.9524 3.2726
BXD42/TyJ f 5.15 0.4259 5.9899 4.3101
BXD5/TyJ f 3.775 0.4259 4.6149 2.9351
BXD6/TyJ f 4.525 0.4259 5.3649 3.6851
BXD8/TyJ f 4.425 0.4259 5.2649 3.5851
BXD9/TyJ f 6.5 0.6954 7.8715 5.1285




  GWAS USING LINEAR MIXED MODELS