Project measure / variable:   Jax5   wean_mean

ID, description, units MPD:31410   wean_mean   mean number of pups weaned based on mean number of litters per dam   [n]  
Data set, strains Jax5   inbred   35 strains     sex: f     age: 6-40wks
Procedure colony observation
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  STRAIN COMPARISON PLOT
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Jax5 - mean number of pups weaned based on mean number of litters per dam



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested35 strains
Mean of the strain means5.04   n
Median of the strain means4.82   n
SD of the strain means± 1.06
Coefficient of variation (CV)0.210
Min–max range of strain means3.11   –   7.80   n
Mean sample size per strain46.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 34 1781.4177 52.3946 27.5147 < 0.0001
Residuals 1583 3014.4141 1.9042


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J f 4.02 1.65   49 0.236 0.411 -0.96
129S1/SvImJ f 4.82 0.853   47 0.124 0.177 2.8, 6.9 -0.21
129X1/SvJ f 4.5 1.28   48 0.185 0.285 -0.51
A/J f 4.93 1.67   51 0.234 0.339 0.7, 9.5 -0.1
AKR/J f 5.41 0.956   49 0.137 0.177 3.3, 7.3 0.35
B6.129P2-Apoetm1Unc/J f 4.67 1.33   50 0.188 0.285 2.3, 7.5 -0.35
B6(Cg)-Tyrc-2J/J f 6.28 1.64   18 0.386 0.261 3.0, 8.5 1.17
BALB/cByJ f 5.12 1.51   43 0.23 0.295 1.5, 8.0 0.08
BALB/cJ f 5.51 1.28   50 0.181 0.232 2.0, 8.7 0.45
C3HeB/FeJ f 6.44 1.35   34 0.231 0.21 1.0, 8.8 1.33
C3H/HeJ f 4.96 1.32   50 0.187 0.266 1.0, 7.3 -0.07
C3H/HeOuJ f 4.64 1.3   50 0.183 0.279 -0.38
C57BL/10J f 4.75 1.25   50 0.176 0.262 1.7, 7.3 -0.27
C57BL/6J f 5.67 0.948   51 0.133 0.167 3.5, 7.3 0.6
C57BLKS/J f 4.77 1.86   45 0.277 0.39 -0.25
C57L/J f 4.72 1.4   42 0.216 0.297 -0.3
CAST/EiJ f 3.74 1.11   49 0.158 0.296 -1.23
CBA/CaJ f 5.51 0.769   49 0.11 0.139 4.5, 8.3 0.45
CBA/J f 4.06 0.896   49 0.128 0.22 2.0, 7.0 -0.93
DBA/1J f 4.04 0.903   50 0.128 0.224 1.9, 7.0 -0.95
DBA/1LacJ f 4.46 0.973   49 0.139 0.218 2.4, 6.7 -0.55
DBA/2J f 4.69 0.958   49 0.137 0.204 2.3, 7.3 -0.33
FVB/NJ f 7.29 1.4   50 0.198 0.192 3.6, 9.3 2.13
KK/HlJ f 4.84 1.58   25 0.315 0.326 1.0, 7.0 -0.19
LP/J f 3.27 1.37   50 0.194 0.419 -1.67
MRL/MpJ f 5.36 1.55   50 0.22 0.29 0.3
NOD.CB17-Prkdcscid/J f 5.86 1.58   50 0.223 0.269 2.7, 8.7 0.78
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 5.95 1.97   22 0.421 0.332 2.0, 9.7 0.86
NOD/ShiLtJ f 7.8 1.79   50 0.253 0.229 3.8, 12.3 2.61
NZB/BlNJ f 3.11 1.94   50 0.274 0.624 -1.83
NZW/LacJ f 4.03 1.02   50 0.145 0.254 2.0, 6.0 -0.96
PL/J f 4.03 1.57   49 0.225 0.391 -0.96
SJL/J f 6.3 1.4   50 0.198 0.222 1.8, 9.0 1.19
SM/J f 4.33 1.9   50 0.269 0.439 -0.67
SWR/J f 6.49 1.36   50 0.192 0.21 2.0, 8.5 1.37


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J f 4.0163 0.1971 4.403 3.6297
129S1/SvImJ f 4.8191 0.2013 5.214 4.4243
129X1/SvJ f 4.5042 0.1992 4.8948 4.1135
A/J f 4.9275 0.1932 5.3065 4.5484
AKR/J f 5.4082 0.1971 5.7948 5.0215
B6.129P2-Apoetm1Unc/J f 4.668 0.1952 5.0508 4.2852
B6(Cg)-Tyrc-2J/J f 6.2833 0.3253 6.9213 5.6454
BALB/cByJ f 5.1163 0.2104 5.529 4.7035
BALB/cJ f 5.506 0.1952 5.8888 5.1232
C3HeB/FeJ f 6.4382 0.2367 6.9024 5.974
C3H/HeJ f 4.964 0.1952 5.3468 4.5812
C3H/HeOuJ f 4.638 0.1952 5.0208 4.2552
C57BL/10J f 4.75 0.1952 5.1328 4.3672
C57BL/6J f 5.6686 0.1932 6.0476 5.2896
C57BLKS/J f 4.7667 0.2057 5.1702 4.3632
C57L/J f 4.7214 0.2129 5.1391 4.3038
CAST/EiJ f 3.7408 0.1971 4.1275 3.3541
CBA/CaJ f 5.5122 0.1971 5.8989 5.1256
CBA/J f 4.0633 0.1971 4.4499 3.6766
DBA/1J f 4.04 0.1952 4.4228 3.6572
DBA/1LacJ f 4.4592 0.1971 4.8459 4.0725
DBA/2J f 4.6918 0.1971 5.0785 4.3052
FVB/NJ f 7.286 0.1952 7.6688 6.9032
KK/HlJ f 4.836 0.276 5.3773 4.2947
LP/J f 3.274 0.1952 3.6568 2.8912
MRL/MpJ f 5.36 0.1952 5.7428 4.9772
NOD.CB17-Prkdcscid/J f 5.864 0.1952 6.2468 5.4812
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 5.9455 0.2942 6.5225 5.3684
NOD/ShiLtJ f 7.802 0.1952 8.1848 7.4192
NZB/BlNJ f 3.108 0.1952 3.4908 2.7252
NZW/LacJ f 4.03 0.1952 4.4128 3.6472
PL/J f 4.0286 0.1971 4.4152 3.6419
SJL/J f 6.302 0.1952 6.6848 5.9192
SM/J f 4.334 0.1952 4.7168 3.9512
SWR/J f 6.486 0.1952 6.8688 6.1032




  GWAS USING LINEAR MIXED MODELS