Phenotype measure:   Jones1   age

ID, description, units MPD:14220   age   animal age when tested (local parameter)   [wks]
Data set, strains Jones1   inbred   13 strains     sex: both
Procedure colony observation
Ontology mappings

  STRAIN COMPARISON PLOT
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Jones1 - animal age when tested (local parameter)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains13 strains
Mean of the strain means12.3   wks 9.96   wks
Median of the strain means9.00   wks 9.00   wks
SD of the strain means± 10.1 ± 3.55
Coefficient of variation (CV)0.821 0.357
Min–max range of strain means4.00   –   42.7   wks 6.00   –   18.0   wks
Mean sample size per strain2.9   mice 3.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 998.5194 998.5194 18.4706 0.0001
strain 9 1963.5571 218.173 4.0358 0.0005
sex:strain 9 4302.055 478.0061 8.8422 < 0.0001
Residuals 54 2919.2333 54.0599


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/HeJ m 17.0 0.0   3 0.0 0.0 17.0, 17.0 1.98
A/WySnJ f 9.0 0.0   4 0.0 0.0 9.0, 9.0 -0.33
A/WySnJ m 8.0 0.0   2   0.0 0.0 8.0, 8.0 -0.55
BALB/cByJ m 10.0 0.0   3 0.0 0.0 10.0, 10.0 0.01
BUB/BnJ f 12.0 0.0   4 0.0 0.0 12.0, 12.0 -0.03
C3H/HeSnJ f 22.3 4.93   3 2.85 0.221 19.0, 28.0 0.99
C3H/HeSnJ m 9.5 2.12   2   1.5 0.223 8.0, 11.0 -0.13
C57BL/6J f 42.7 21.8   6 8.9 0.511 5.0, 56.0 3.01
C57BL/6J m 7.53 2.88   15 0.742 0.382 5.0, 13.0 -0.68
CAST/EiJ f 10.0 0.0   4 0.0 0.0 10.0, 10.0 -0.23
CBA/J f 9.0 0.0   2   0.0 0.0 9.0, 9.0 -0.33
CBA/J m 9.0 0.0   2   0.0 0.0 9.0, 9.0 -0.27
DBA/1LacJ f 11.0 0.0   2   0.0 0.0 11.0, 11.0 -0.13
DBA/1LacJ m 9.0 0.0   2   0.0 0.0 9.0, 9.0 -0.27
DBA/2J f 4.0 0.0   3 0.0 0.0 4.0, 4.0 -0.82
DBA/2J m 8.0 3.1   6 1.26 0.387 4.0, 10.0 -0.55
JF1/MsJ f 8.0 0.0   2   0.0 0.0 8.0, 8.0 -0.43
LP/J f 7.0 0.0   4 0.0 0.0 7.0, 7.0 -0.53
LP/J m 6.0 0.0   4 0.0 0.0 6.0, 6.0 -1.12
MRL/MpJ m 10.0 0.0   4 0.0 0.0 10.0, 10.0 0.01
NOD/ShiLtJ f 9.0 0.0   2   0.0 0.0 9.0, 9.0 -0.33
NOD/ShiLtJ m 18.0 10.4   4 5.2 0.577 9.0, 27.0 2.26
SJL/J f 6.0 0.0   2   0.0 0.0 6.0, 6.0 -0.62
SJL/J m 7.5 1.0   4 0.5 0.133 6.0, 8.0 -0.69
SKH2/J f 10.0 0.0   2   0.0 0.0 10.0, 10.0 -0.23
SKH2/J m 10.0 0.0   3 0.0 0.0 10.0, 10.0 0.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/WySnJ f 9.0 3.6763 16.3705 1.6295
A/WySnJ m 8.0 5.199 18.4234 -2.4234
C3H/HeSnJ f 22.3333 4.245 30.844 13.8226
C3H/HeSnJ m 9.5 5.199 19.9234 -0.9234
C57BL/6J f 42.6667 3.0017 48.6846 36.6487
C57BL/6J m 7.5333 1.8984 11.3394 3.7272
CBA/J f 9.0 5.199 19.4234 -1.4234
CBA/J m 9.0 5.199 19.4234 -1.4234
DBA/1LacJ f 11.0 5.199 21.4234 0.5766
DBA/1LacJ m 9.0 5.199 19.4234 -1.4234
DBA/2J f 4.0 4.245 12.5107 -4.5107
DBA/2J m 8.0 3.0017 14.018 1.982
LP/J f 7.0 3.6763 14.3705 -0.3705
LP/J m 6.0 3.6763 13.3705 -1.3705
NOD/ShiLtJ f 9.0 5.199 19.4234 -1.4234
NOD/ShiLtJ m 18.0 3.6763 25.3705 10.6295
SJL/J f 6.0 5.199 16.4234 -4.4234
SJL/J m 7.5 3.6763 14.8705 0.1295
SKH2/J f 10.0 5.199 20.4234 -0.4234
SKH2/J m 10.0 4.245 18.5107 1.4893


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/WySnJ both 8.5 3.1837 14.883 2.117
C3H/HeSnJ both 15.9167 3.356 22.645 9.1884
C57BL/6J both 25.1 1.7758 28.6603 21.5397
CBA/J both 9.0 3.6763 16.3705 1.6295
DBA/1LacJ both 10.0 3.6763 17.3705 2.6295
DBA/2J both 6.0 2.5995 11.2117 0.7883
LP/J both 6.5 2.5995 11.7117 1.2883
NOD/ShiLtJ both 13.5 3.1837 19.883 7.117
SJL/J both 6.75 3.1837 13.133 0.367
SKH2/J both 10.0 3.356 16.7283 3.2717




  GWAS USING LINEAR MIXED MODELS