Project measure / variable:   Donahue17   fecundity_index

ID, description, units MPD:44305   fecundity_index   mean litter size divided by mean litter interval   [n/wks]  
Data set, strains Donahue17   BXD   30 strains     sex: f     age: 3-57wks
Procedure colony observation
Ontology mappings

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  STRAIN COMPARISON PLOT
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Donahue17 - mean litter size divided by mean litter interval



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested30 strains
Mean of the strain means1.07   n/wks
Median of the strain means1.10   n/wks
SD of the strain means± 0.253
Coefficient of variation (CV)0.236
Min–max range of strain means0.671   –   1.70   n/wks
Mean sample size per strain7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 29 14.4403 0.4979 5.9344 < 0.0001
Residuals 196 16.446 0.0839


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD11/TyJ f 0.888 0.164   8 0.0581 0.185 0.6, 1.1 -0.74
BXD12/TyJ f 0.871 0.281   7 0.106 0.323 0.6, 1.3 -0.8
BXD13/TyJ f 1.6 0.466   8 0.165 0.291 1.0, 2.1 2.08
BXD14/TyJ f 0.825 0.292   8 0.103 0.353 0.4, 1.3 -0.99
BXD15/TyJ f 0.812 0.27   8 0.0953 0.332 0.4, 1.1 -1.04
BXD16/TyJ f 1.0 0.454   8 0.16 0.454 0.6, 1.8 -0.29
BXD18/TyJ f 0.857 0.299   7 0.113 0.349 0.4, 1.2 -0.86
BXD19/TyJ f 1.09 0.323   8 0.114 0.297 0.7, 1.6 0.06
BXD1/TyJ f 0.85 0.16   8 0.0567 0.189 0.6, 1.1 -0.89
BXD21/TyJ f 1.24 0.396   8 0.14 0.32 0.6, 1.8 0.65
BXD22/TyJ f 0.675 0.255   8 0.0901 0.378 0.3, 1.1 -1.58
BXD24/TyJ-Cep290rd16/J f 1.01 0.308   7 0.116 0.303 0.6, 1.5 -0.25
BXD27/TyJ f 1.2 0.342   7 0.129 0.285 0.8, 1.8 0.5
BXD28/TyJ f 1.12 0.204   6 0.0833 0.183 0.8, 1.4 0.18
BXD29-Tlr4lps-2J/J f 0.85 0.131   8 0.0463 0.154 0.7, 1.0 -0.89
BXD29/Ty f 1.17 0.296   8 0.105 0.252 0.8, 1.6 0.38
BXD2/TyJ f 1.32 0.249   8 0.0881 0.188 1.1, 1.8 0.97
BXD31/TyJ f 0.671 0.243   7 0.0918 0.362 0.5, 1.2 -1.59
BXD32/TyJ f 1.46 0.41   8 0.145 0.281 0.8, 2.1 1.52
BXD33/TyJ f 0.725 0.183   8 0.0648 0.253 0.6, 1.1 -1.38
BXD34/TyJ f 1.7 0.351   8 0.124 0.206 1.0, 2.0 2.47
BXD36/TyJ f 1.37 0.408   6 0.167 0.299 0.8, 2.0 1.17
BXD38/TyJ f 1.1 0.262   8 0.0926 0.238 0.8, 1.6 0.1
BXD39/TyJ f 1.06 0.213   8 0.0754 0.201 0.8, 1.5 -0.06
BXD40/TyJ f 1.2 0.185   8 0.0655 0.154 0.9, 1.4 0.5
BXD42/TyJ f 1.1 0.256   8 0.0906 0.233 0.7, 1.5 0.1
BXD5/TyJ f 1.14 0.292   8 0.103 0.257 0.8, 1.5 0.26
BXD6/TyJ f 1.17 0.128   8 0.0453 0.109 1.0, 1.4 0.38
BXD8/TyJ f 1.06 0.213   8 0.0754 0.201 0.7, 1.3 -0.06
BXD9/TyJ f 1.1 0.2   3 0.115 0.182 0.9, 1.3 0.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD11/TyJ f 0.8875 0.1024 1.0895 0.6855
BXD12/TyJ f 0.8714 0.1095 1.0873 0.6555
BXD13/TyJ f 1.6 0.1024 1.802 1.398
BXD14/TyJ f 0.825 0.1024 1.027 0.623
BXD15/TyJ f 0.8125 0.1024 1.0145 0.6105
BXD16/TyJ f 1.0 0.1024 1.202 0.798
BXD18/TyJ f 0.8571 0.1095 1.0731 0.6412
BXD19/TyJ f 1.0875 0.1024 1.2895 0.8855
BXD1/TyJ f 0.85 0.1024 1.052 0.648
BXD21/TyJ f 1.2375 0.1024 1.4395 1.0355
BXD22/TyJ f 0.675 0.1024 0.877 0.473
BXD24/TyJ-Cep290rd16/J f 1.0143 0.1095 1.2302 0.7984
BXD27/TyJ f 1.2 0.1095 1.4159 0.9841
BXD28/TyJ f 1.1167 0.1183 1.3499 0.8834
BXD29-Tlr4lps-2J/J f 0.85 0.1024 1.052 0.648
BXD29/Ty f 1.175 0.1024 1.377 0.973
BXD2/TyJ f 1.325 0.1024 1.527 1.123
BXD31/TyJ f 0.6714 0.1095 0.8873 0.4555
BXD32/TyJ f 1.4625 0.1024 1.6645 1.2605
BXD33/TyJ f 0.725 0.1024 0.927 0.523
BXD34/TyJ f 1.7 0.1024 1.902 1.498
BXD36/TyJ f 1.3667 0.1183 1.5999 1.1334
BXD38/TyJ f 1.1 0.1024 1.302 0.898
BXD39/TyJ f 1.0625 0.1024 1.2645 0.8605
BXD40/TyJ f 1.2 0.1024 1.402 0.998
BXD42/TyJ f 1.1 0.1024 1.302 0.898
BXD5/TyJ f 1.1375 0.1024 1.3395 0.9355
BXD6/TyJ f 1.175 0.1024 1.377 0.973
BXD8/TyJ f 1.0625 0.1024 1.2645 0.8605
BXD9/TyJ f 1.1 0.1672 1.4298 0.7702




  GWAS USING LINEAR MIXED MODELS