Phenotype measure:   Palmer1   age

ID, description, units MPD:25580   age   age at test (local parameter)   [wks]
Data set, strains Palmer1   B6.A consomic w/par   19 strains     sex: both
Procedure colony observation
Ontology mappings

  STRAIN COMPARISON PLOT
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Palmer1 - age at test (local parameter)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested19 strains18 strains
Mean of the strain means9.31   wks 9.34   wks
Median of the strain means9.45   wks 9.34   wks
SD of the strain means± 0.498 ± 0.607
Coefficient of variation (CV)0.0535 0.0650
Min–max range of strain means8.42   –   10.1   wks 8.18   –   10.7   wks
Mean sample size per strain10.8   mice 11.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0688 0.0688 0.0934 0.76
strain 17 100.5859 5.9168 8.036 < 0.0001
sex:strain 17 16.9526 0.9972 1.3544 0.1555
Residuals 416 306.2954 0.7363


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 8.57 0.535   7 0.202 0.0624 8.0, 9.0 -1.49
A/J m 8.9 0.738   10 0.233 0.0829 8.0, 10.0 -0.73
B6.A-Chr1 f 8.88 0.991   8 0.35 0.112 7.0, 10.0 -0.87
B6.A-Chr1 m 9.64 1.75   11 0.527 0.181 8.0, 12.0 0.49
B6.A-Chr10 f 9.45 0.522   11 0.157 0.0552 9.0, 10.0 0.27
B6.A-Chr10 m 9.79 0.802   14 0.214 0.0819 9.0, 11.0 0.73
B6.A-Chr11 f 9.45 0.522   11 0.157 0.0552 9.0, 10.0 0.27
B6.A-Chr11 m 9.31 0.48   13 0.133 0.0516 9.0, 10.0 -0.06
B6.A-Chr12 f 9.75 0.754   12 0.218 0.0773 9.0, 11.0 0.87
B6.A-Chr12 m 9.11 0.333   9 0.111 0.0366 9.0, 10.0 -0.39
B6.A-Chr14 f 9.64 0.809   11 0.244 0.084 8.0, 10.0 0.65
B6.A-Chr14 m 10.0 0.775   11 0.234 0.0775 8.0, 11.0 1.08
B6.A-Chr15 f 8.57 1.13   7 0.429 0.132 7.0, 10.0 -1.49
B6.A-Chr15 m 8.5 1.22   6 0.5 0.144 7.0, 10.0 -1.39
B6.A-Chr16 f 9.5 0.527   10 0.167 0.0555 9.0, 10.0 0.37
B6.A-Chr17 f 9.0 1.04   12 0.302 0.116 8.0, 11.0 -0.63
B6.A-Chr17 m 8.18 0.405   11 0.122 0.0494 8.0, 9.0 -1.92
B6.A-Chr18 f 8.42 0.793   12 0.229 0.0942 8.0, 10.0 -1.79
B6.A-Chr18 m 8.73 0.786   11 0.237 0.0901 8.0, 10.0 -1.01
B6.A-Chr19 f 9.54 0.519   13 0.144 0.0544 9.0, 10.0 0.45
B6.A-Chr19 m 9.5 0.905   12 0.261 0.0952 8.0, 10.0 0.26
B6.A-Chr3 f 10.0 0.707   9 0.236 0.0707 9.0, 11.0 1.38
B6.A-Chr3 m 9.78 0.833   9 0.278 0.0852 9.0, 11.0 0.72
B6.A-Chr4 f 9.14 1.07   7 0.404 0.117 8.0, 10.0 -0.35
B6.A-Chr4 m 9.36 0.809   11 0.244 0.0864 8.0, 10.0 0.03
B6.A-Chr5 f 9.3 0.483   10 0.153 0.0519 9.0, 10.0 -0.03
B6.A-Chr5 m 9.15 0.376   13 0.104 0.041 9.0, 10.0 -0.32
B6.A-Chr6 f 8.89 0.928   9 0.309 0.104 8.0, 10.0 -0.85
B6.A-Chr6 m 9.08 0.862   13 0.239 0.095 8.0, 10.0 -0.44
B6.A-Chr7 f 10.1 0.862   13 0.239 0.0856 9.0, 11.0 1.58
B6.A-Chr7 m 10.7 1.11   13 0.308 0.104 9.0, 12.0 2.23
B6.A-Chr9 f 9.93 1.49   14 0.399 0.15 8.0, 11.0 1.24
B6.A-Chr9 m 10.1 1.08   12 0.313 0.107 8.0, 11.0 1.24
B6.A-ChrX f 9.14 0.363   14 0.0971 0.0397 9.0, 10.0 -0.35
B6.A-ChrX m 9.0 0.0   11 0.0 0.0 9.0, 9.0 -0.57
C57BL/6J f 9.7 0.904   44 0.136 0.0932 8.0, 11.0 0.77
C57BL/6J m 9.37 0.852   38 0.138 0.0909 8.0, 11.0 0.04


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 8.5714 0.3243 9.2089 7.9339
A/J m 8.9 0.2713 9.4334 8.3666
B6.A-Chr1 f 8.875 0.3034 9.4713 8.2787
B6.A-Chr1 m 9.6364 0.2587 10.1449 9.1278
B6.A-Chr10 f 9.4545 0.2587 9.9631 8.946
B6.A-Chr10 m 9.7857 0.2293 10.2365 9.3349
B6.A-Chr11 f 9.4545 0.2587 9.9631 8.946
B6.A-Chr11 m 9.3077 0.238 9.7755 8.8399
B6.A-Chr12 f 9.75 0.2477 10.2369 9.2631
B6.A-Chr12 m 9.1111 0.286 9.6733 8.5489
B6.A-Chr14 f 9.6364 0.2587 10.1449 9.1278
B6.A-Chr14 m 10.0 0.2587 10.5086 9.4914
B6.A-Chr15 f 8.5714 0.3243 9.2089 7.9339
B6.A-Chr15 m 8.5 0.3503 9.1886 7.8114
B6.A-Chr17 f 9.0 0.2477 9.4869 8.5131
B6.A-Chr17 m 8.1818 0.2587 8.6904 7.6733
B6.A-Chr18 f 8.4167 0.2477 8.9036 7.9298
B6.A-Chr18 m 8.7273 0.2587 9.2358 8.2187
B6.A-Chr19 f 9.5385 0.238 10.0063 9.0707
B6.A-Chr19 m 9.5 0.2477 9.9869 9.0131
B6.A-Chr3 f 10.0 0.286 10.5622 9.4378
B6.A-Chr3 m 9.7778 0.286 10.34 9.2155
B6.A-Chr4 f 9.1429 0.3243 9.7804 8.5053
B6.A-Chr4 m 9.3636 0.2587 9.8722 8.8551
B6.A-Chr5 f 9.3 0.2713 9.8334 8.7666
B6.A-Chr5 m 9.1538 0.238 9.6217 8.686
B6.A-Chr6 f 8.8889 0.286 9.4511 8.3267
B6.A-Chr6 m 9.0769 0.238 9.5447 8.6091
B6.A-Chr7 f 10.0769 0.238 10.5447 9.6091
B6.A-Chr7 m 10.6923 0.238 11.1601 10.2245
B6.A-Chr9 f 9.9286 0.2293 10.3794 9.4778
B6.A-Chr9 m 10.0833 0.2477 10.5702 9.5964
B6.A-ChrX f 9.1429 0.2293 9.5936 8.6921
B6.A-ChrX m 9.0 0.2587 9.5086 8.4914
C57BL/6J f 9.7045 0.1294 9.9588 9.4503
C57BL/6J m 9.3684 0.1392 9.642 9.0948


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 8.7357 0.2114 9.1513 8.3201
B6.A-Chr1 both 9.2557 0.1994 9.6476 8.8638
B6.A-Chr10 both 9.6201 0.1729 9.9599 9.2803
B6.A-Chr11 both 9.3811 0.1758 9.7266 9.0356
B6.A-Chr12 both 9.4306 0.1892 9.8024 9.0587
B6.A-Chr14 both 9.8182 0.1829 10.1778 9.4586
B6.A-Chr15 both 8.5357 0.2387 9.0049 8.0665
B6.A-Chr17 both 8.5909 0.1791 8.9429 8.2389
B6.A-Chr18 both 8.572 0.1791 8.924 8.2199
B6.A-Chr19 both 9.5192 0.1718 9.8568 9.1816
B6.A-Chr3 both 9.8889 0.2022 10.2864 9.4913
B6.A-Chr4 both 9.2532 0.2074 9.661 8.8455
B6.A-Chr5 both 9.2269 0.1805 9.5817 8.8722
B6.A-Chr6 both 8.9829 0.186 9.3486 8.6172
B6.A-Chr7 both 10.3846 0.1683 10.7154 10.0538
B6.A-Chr9 both 10.006 0.1688 10.3377 9.6742
B6.A-ChrX both 9.0714 0.1729 9.4112 8.7316
C57BL/6J both 9.5365 0.095 9.7232 9.3497




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA