Project measure / variable:   Jax5   wean

ID, description, units MPD:31405   wean   number of pups weaned per litter   [n]  
Data set, strains Jax5   inbred   35 strains     sex: f     age: 6-40wks
Procedure colony observation
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  STRAIN COMPARISON PLOT
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Jax5 - number of pups weaned per litter



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested35 strains
Mean of the strain means5.02   n
Median of the strain means4.83   n
SD of the strain means± 1.04
Coefficient of variation (CV)0.207
Min–max range of strain means3.02   –   7.70   n
Mean sample size per strain185.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 34 6801.598 200.047 38.2376 < 0.0001
Residuals 6416 33566.4828 5.2317


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J f 4.19 2.3   150 0.187 0.548 -0.79
129S1/SvImJ f 4.85 2.4   213 0.164 0.494 -0.16
129X1/SvJ f 4.64 2.13   213 0.146 0.46 -0.36
A/J f 4.92 2.44   210 0.168 0.496 -0.09
AKR/J f 5.43 1.96   164 0.153 0.361 0.4
B6.129P2-Apoetm1Unc/J f 4.47 2.39   191 0.173 0.535 -0.52
B6(Cg)-Tyrc-2J/J f 6.19 2.27   59 0.296 0.367 1.13
BALB/cByJ f 5.14 2.35   143 0.196 0.456 0.12
BALB/cJ f 5.46 2.48   198 0.176 0.454 0.43
C3HeB/FeJ f 6.43 2.23   180 0.166 0.347 1.36
C3H/HeJ f 4.95 2.2   174 0.167 0.445 -0.06
C3H/HeOuJ f 4.74 2.23   211 0.154 0.471 -0.26
C57BL/10J f 4.68 2.28   190 0.165 0.487 -0.32
C57BL/6J f 5.54 2.35   260 0.145 0.423 0.5
C57BLKS/J f 4.75 2.18   119 0.199 0.458 -0.26
C57L/J f 4.83 2.02   128 0.178 0.418 -0.18
CAST/EiJ f 3.73 1.86   177 0.14 0.498 -1.24
CBA/CaJ f 5.46 1.74   202 0.123 0.319 0.43
CBA/J f 4.01 1.89   265 0.116 0.471 -0.97
DBA/1J f 3.93 1.92   255 0.12 0.488 -1.04
DBA/1LacJ f 4.38 2.48   254 0.156 0.568 -0.61
DBA/2J f 4.66 1.85   261 0.115 0.397 -0.34
FVB/NJ f 7.29 2.01   240 0.13 0.276 2.19
KK/HlJ f 4.78 2.42   78 0.274 0.506 -0.23
LP/J f 3.29 2.21   187 0.162 0.671 -1.66
MRL/MpJ f 5.37 2.38   168 0.184 0.444 0.34
NOD.CB17-Prkdcscid/J f 5.84 2.64   203 0.186 0.453 0.79
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 5.54 2.94   95 0.302 0.531 0.5
NOD/ShiLtJ f 7.7 3.07   175 0.232 0.398 2.58
NZB/BlNJ f 3.02 2.73   127 0.242 0.902 -1.92
NZW/LacJ f 4.0 2.26   194 0.163 0.566 -0.98
PL/J f 4.32 2.07   215 0.141 0.479 -0.67
SJL/J f 6.24 2.89   251 0.183 0.464 1.18
SM/J f 4.18 2.46   136 0.211 0.587 -0.8
SWR/J f 6.59 2.02   165 0.157 0.306 1.51


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J f 4.1933 0.1868 4.5594 3.8272
129S1/SvImJ f 4.8498 0.1567 5.157 4.5425
129X1/SvJ f 4.6385 0.1567 4.9457 4.3313
A/J f 4.9238 0.1578 5.2332 4.6144
AKR/J f 5.4268 0.1786 5.777 5.0767
B6.129P2-Apoetm1Unc/J f 4.466 0.1655 4.7904 4.1415
B6(Cg)-Tyrc-2J/J f 6.1864 0.2978 6.7702 5.6027
BALB/cByJ f 5.1399 0.1913 5.5148 4.7649
BALB/cJ f 5.4596 0.1626 5.7782 5.1409
C3HeB/FeJ f 6.4278 0.1705 6.762 6.0936
C3H/HeJ f 4.9483 0.1734 5.2882 4.6084
C3H/HeOuJ f 4.7393 0.1575 5.048 4.4307
C57BL/10J f 4.6842 0.1659 5.0095 4.3589
C57BL/6J f 5.5423 0.1419 5.8204 5.2642
C57BLKS/J f 4.7479 0.2097 5.1589 4.3369
C57L/J f 4.8281 0.2022 5.2244 4.4318
CAST/EiJ f 3.7288 0.1719 4.0658 3.3918
CBA/CaJ f 5.4604 0.1609 5.7759 5.1449
CBA/J f 4.0113 0.1405 4.2868 3.7359
DBA/1J f 3.9294 0.1432 4.2102 3.6486
DBA/1LacJ f 4.378 0.1435 4.6593 4.0966
DBA/2J f 4.659 0.1416 4.9365 4.3815
FVB/NJ f 7.2917 0.1476 7.5811 7.0022
KK/HlJ f 4.7821 0.259 5.2897 4.2744
LP/J f 3.2941 0.1673 3.622 2.9662
MRL/MpJ f 5.369 0.1765 5.715 5.0231
NOD.CB17-Prkdcscid/J f 5.8374 0.1605 6.1521 5.5227
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 5.5368 0.2347 5.9969 5.0768
NOD/ShiLtJ f 7.7029 0.1729 8.0418 7.3639
NZB/BlNJ f 3.0236 0.203 3.4215 2.6257
NZW/LacJ f 4.0 0.1642 4.3219 3.6781
PL/J f 4.3209 0.156 4.6267 4.0151
SJL/J f 6.2351 0.1444 6.5181 5.952
SM/J f 4.1838 0.1961 4.5683 3.7993
SWR/J f 6.5939 0.1781 6.943 6.2449




  GWAS USING LINEAR MIXED MODELS