Phenotype measure:   Wahlsten1   tissue

ID, description, units MPD:10805   tissue   tissue quality; 0=no faults, 1=one or more faults (local parameter)   [score]
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 12wks
Procedure colony observation
Ontology mappings

  STRAIN COMPARISON PLOT
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Wahlsten1 - tissue quality; 0=no faults, 1=one or more faults (local parameter)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains20 strains
Mean of the strain means0.237   score 0.152   score
Median of the strain means0.200   score 0.146   score
SD of the strain means± 0.157 ± 0.111
Coefficient of variation (CV)0.663 0.730
Min–max range of strain means0   –   0.600   score 0   –   0.417   score
Mean sample size per strain9.5   mice 9.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.6629 0.6629 4.0973 0.0437
strain 19 3.5101 0.1847 1.1419 0.307
sex:strain 19 2.7999 0.1474 0.9109 0.5697
Residuals 345 55.8167 0.1618


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.4 0.516   10 0.163 1.29 1.04
129S1/SvImJ m 0.1 0.316   10 0.1 3.16 -0.47
A/J f 0.5 0.535   8 0.189 1.07 1.67
A/J m 0.1 0.316   10 0.1 3.16 -0.47
AKR/J f 0.111 0.333   9 0.111 3.0 -0.8
AKR/J m 0.25 0.463   8 0.164 1.85 0.88
BALB/cByJ f 0.2 0.422   10 0.133 2.11 -0.24
BALB/cByJ m 0.1 0.316   10 0.1 3.16 -0.47
BTBR T+ Itpr3tf/J f 0.333 0.492   12 0.142 1.48 0.61
BTBR T+ Itpr3tf/J m 0.167 0.408   6 0.167 2.45 0.13
C3H/HeJ f 0.2 0.422   10 0.133 2.11 -0.24
C3H/HeJ m 0.25 0.463   8 0.164 1.85 0.88
C57BL/6J f 0.25 0.463   8 0.164 1.85 0.08
C57BL/6J m 0.1 0.316   10 0.1 3.16 -0.47
C57L/J f 0.1 0.316   10 0.1 3.16 -0.87
C57L/J m 0.0 0.0   8 0.0 0.0 -1.37
C58/J f 0.333 0.5   9 0.167 1.5 0.61
C58/J m 0.2 0.422   10 0.133 2.11 0.43
CAST/EiJ f 0.111 0.333   9 0.111 3.0 -0.8
CAST/EiJ m 0.0 0.0   9 0.0 0.0 -1.37
DBA/2J f 0.3 0.483   10 0.153 1.61 0.4
DBA/2J m 0.125 0.354   8 0.125 2.83 -0.25
FVB/NJ f 0.1 0.316   10 0.1 3.16 -0.87
FVB/NJ m 0.273 0.467   11 0.141 1.71 1.08
MOLF/EiJ f 0.125 0.354   8 0.125 2.83 -0.71
MOLF/EiJ m 0.0 0.0   6 0.0 0.0 -1.37
NOD/ShiLtJ f 0.167 0.389   12 0.112 2.34 -0.45
NOD/ShiLtJ m 0.25 0.452   12 0.131 1.81 0.88
NZB/BlNJ f 0.167 0.408   6 0.167 2.45 -0.45
NZB/BlNJ m 0.417 0.515   12 0.149 1.24 2.38
PERA/EiJ f 0.6 0.516   10 0.163 0.861 2.31
PERA/EiJ m 0.25 0.452   12 0.131 1.81 0.88
PL/J f 0.167 0.389   12 0.112 2.34 -0.45
PL/J m 0.0 0.0   8 0.0 0.0 -1.37
SJL/J f 0.5 0.535   8 0.189 1.07 1.67
SJL/J m 0.167 0.389   12 0.112 2.34 0.13
SM/J f 0.214 0.426   14 0.114 1.99 -0.15
SM/J m 0.2 0.422   10 0.133 2.11 0.43
SPRET/EiJ f 0.0 0.0   5 0.0 0.0 -1.51
SWR/J f 0.1 0.316   10 0.1 3.16 -0.87
SWR/J m 0.1 0.316   10 0.1 3.16 -0.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.4 0.1272 0.6502 0.1498
129S1/SvImJ m 0.1 0.1272 0.3502 -0.1502
A/J f 0.5 0.1422 0.7797 0.2203
A/J m 0.1 0.1272 0.3502 -0.1502
AKR/J f 0.1111 0.1341 0.3748 -0.1526
AKR/J m 0.25 0.1422 0.5297 -0.0297
BALB/cByJ f 0.2 0.1272 0.4502 -0.0502
BALB/cByJ m 0.1 0.1272 0.3502 -0.1502
BTBR T+ Itpr3tf/J f 0.3333 0.1161 0.5617 0.105
BTBR T+ Itpr3tf/J m 0.1667 0.1642 0.4896 -0.1563
C3H/HeJ f 0.2 0.1272 0.4502 -0.0502
C3H/HeJ m 0.25 0.1422 0.5297 -0.0297
C57BL/6J f 0.25 0.1422 0.5297 -0.0297
C57BL/6J m 0.1 0.1272 0.3502 -0.1502
C57L/J f 0.1 0.1272 0.3502 -0.1502
C57L/J m 0.0 0.1422 0.2797 -0.2797
C58/J f 0.3333 0.1341 0.597 0.0696
C58/J m 0.2 0.1272 0.4502 -0.0502
CAST/EiJ f 0.1111 0.1341 0.3748 -0.1526
CAST/EiJ m 0.0 0.1341 0.2637 -0.2637
DBA/2J f 0.3 0.1272 0.5502 0.0498
DBA/2J m 0.125 0.1422 0.4047 -0.1547
FVB/NJ f 0.1 0.1272 0.3502 -0.1502
FVB/NJ m 0.2727 0.1213 0.5113 0.0342
MOLF/EiJ f 0.125 0.1422 0.4047 -0.1547
MOLF/EiJ m 0.0 0.1642 0.323 -0.323
NOD/ShiLtJ f 0.1667 0.1161 0.395 -0.0617
NOD/ShiLtJ m 0.25 0.1161 0.4784 0.0216
NZB/BlNJ f 0.1667 0.1642 0.4896 -0.1563
NZB/BlNJ m 0.4167 0.1161 0.645 0.1883
PERA/EiJ f 0.6 0.1272 0.8502 0.3498
PERA/EiJ m 0.25 0.1161 0.4784 0.0216
PL/J f 0.1667 0.1161 0.395 -0.0617
PL/J m 0.0 0.1422 0.2797 -0.2797
SJL/J f 0.5 0.1422 0.7797 0.2203
SJL/J m 0.1667 0.1161 0.395 -0.0617
SM/J f 0.2143 0.1075 0.4257 0.0028
SM/J m 0.2 0.1272 0.4502 -0.0502
SWR/J f 0.1 0.1272 0.3502 -0.1502
SWR/J m 0.1 0.1272 0.3502 -0.1502


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.25 0.0899 0.4269 0.0731
A/J both 0.3 0.0954 0.4876 0.1124
AKR/J both 0.1806 0.0977 0.3728 -0.0117
BALB/cByJ both 0.15 0.0899 0.3269 -0.0269
BTBR T+ Itpr3tf/J both 0.25 0.1006 0.4478 0.0522
C3H/HeJ both 0.225 0.0954 0.4126 0.0374
C57BL/6J both 0.175 0.0954 0.3626 -0.0126
C57L/J both 0.05 0.0954 0.2376 -0.1376
C58/J both 0.2667 0.0924 0.4484 0.0849
CAST/EiJ both 0.0556 0.0948 0.242 -0.1309
DBA/2J both 0.2125 0.0954 0.4001 0.0249
FVB/NJ both 0.1864 0.0879 0.3592 0.0135
MOLF/EiJ both 0.0625 0.1086 0.2761 -0.1511
NOD/ShiLtJ both 0.2083 0.0821 0.3698 0.0468
NZB/BlNJ both 0.2917 0.1006 0.4894 0.0939
PERA/EiJ both 0.425 0.0861 0.5944 0.2556
PL/J both 0.0833 0.0918 0.2639 -0.0972
SJL/J both 0.3333 0.0918 0.5139 0.1528
SM/J both 0.2071 0.0833 0.3709 0.0434
SWR/J both 0.1 0.0899 0.2769 -0.0769




  GWAS USING LINEAR MIXED MODELS