Project measure / variable:   Donahue11   litter_interval

ID, description, units MPD:42002   litter_interval   mean litter interval   [wks]  
Data set, strains Donahue11   B6.PWD consomic   26 strains     sex: f     age: 4-55wks
Procedure colony observation
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  STRAIN COMPARISON PLOT
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Donahue11 - mean litter interval



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested26 strains
Mean of the strain means5.91   wks
Median of the strain means5.68   wks
SD of the strain means± 1.13
Coefficient of variation (CV)0.192
Min–max range of strain means4.49   –   9.05   wks
Mean sample size per strain6.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 24 199.3638 8.3068 2.8779 < 0.0001
Residuals 155 447.3987 2.8864


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 5.47 1.14   8 0.403 0.208 3.7, 7.0 -0.39
B6.PWD-Chr10.1 f 5.89 2.18   8 0.772 0.371 3.0, 9.0 -0.02
B6.PWD-Chr10.2 f 7.55 1.48   2   1.05 0.197 6.5, 8.6 1.45
B6.PWD-Chr10.3 f 6.12 1.66   13 0.462 0.272 3.6, 9.0 0.19
B6.PWD-Chr11.1 f 4.97 0.45   4 0.225 0.0905 4.6, 5.5 -0.83
B6.PWD-Chr11.2 f 5.06 0.723   5 0.323 0.143 4.3, 6.2 -0.75
B6.PWD-Chr11.3 f 5.96 1.88   5 0.841 0.315 4.4, 9.0 0.05
B6.PWD-Chr12 f 5.11 0.977   7 0.369 0.191 3.9, 6.6 -0.7
B6.PWD-Chr13 f 9.05 2.9   4 1.45 0.321 6.8, 13.1 2.77
B6.PWD-Chr14 f 4.85 1.48   2   1.05 0.306 3.8, 5.9 -0.93
B6.PWD-Chr15 f 5.55 2.17   4 1.08 0.39 3.3, 7.6 -0.32
B6.PWD-Chr16 f 5.8 1.44   4 0.722 0.249 4.2, 7.7 -0.1
B6.PWD-Chr17 f 4.49 0.779   8 0.275 0.174 3.6, 6.0 -1.25
B6.PWD-Chr18 f 6.7 2.47   9 0.823 0.368 3.4, 10.4 0.7
B6.PWD-Chr19 f 4.95 0.873   11 0.263 0.177 3.8, 6.4 -0.85
B6.PWD-Chr2 f 6.16 1.34   5 0.597 0.217 4.8, 8.0 0.22
B6.PWD-Chr3 f 5.6 1.21   3 0.7 0.217 4.2, 6.3 -0.27
B6.PWD-Chr4 f 7.79 2.94   10 0.93 0.377 3.5, 14.6 1.66
B6.PWD-Chr5 f 5.5 1.51   7 0.569 0.274 3.7, 8.6 -0.36
B6.PWD-Chr6 f 5.0 1.13   2   0.8 0.226 4.2, 5.8 -0.8
B6.PWD-Chr8 f 5.76 1.32   12 0.382 0.23 2.9, 7.3 -0.13
B6.PWD-Chr9 f 7.5 0.0   1   0.0 0.0 7.5, 7.5 1.4
B6.PWD-ChrX.1 f 4.74 1.2   8 0.426 0.254 3.0, 6.7 -1.03
B6.PWD-ChrX.2 f 7.36 2.34   14 0.625 0.317 3.8, 11.7 1.28
B6.PWD-ChrX.3 f 6.01 1.78   7 0.674 0.296 3.0, 8.5 0.09
B6.PWD-ChrY f 4.67 0.972   18 0.229 0.208 3.1, 6.9 -1.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 5.475 0.6007 6.6616 4.2884
B6.PWD-Chr10.1 f 5.8875 0.6007 7.0741 4.7009
B6.PWD-Chr10.2 f 7.55 1.2013 9.9231 5.1769
B6.PWD-Chr10.3 f 6.1231 0.4712 7.0539 5.1923
B6.PWD-Chr11.1 f 4.975 0.8495 6.653 3.297
B6.PWD-Chr11.2 f 5.06 0.7598 6.5609 3.5591
B6.PWD-Chr11.3 f 5.96 0.7598 7.4609 4.4591
B6.PWD-Chr12 f 5.1143 0.6421 6.3828 3.8458
B6.PWD-Chr13 f 9.05 0.8495 10.728 7.372
B6.PWD-Chr14 f 4.85 1.2013 7.2231 2.4769
B6.PWD-Chr15 f 5.55 0.8495 7.228 3.872
B6.PWD-Chr16 f 5.8 0.8495 7.478 4.122
B6.PWD-Chr17 f 4.4875 0.6007 5.6741 3.3009
B6.PWD-Chr18 f 6.7 0.5663 7.8187 5.5813
B6.PWD-Chr19 f 4.9455 0.5123 5.9574 3.9336
B6.PWD-Chr2 f 6.16 0.7598 7.6609 4.6591
B6.PWD-Chr3 f 5.6 0.9809 7.5376 3.6624
B6.PWD-Chr4 f 7.79 0.5373 8.8513 6.7287
B6.PWD-Chr5 f 5.5 0.6421 6.7685 4.2315
B6.PWD-Chr6 f 5.0 1.2013 7.3731 2.6269
B6.PWD-Chr8 f 5.7583 0.4904 6.7272 4.7895
B6.PWD-ChrX.1 f 4.7375 0.6007 5.9241 3.5509
B6.PWD-ChrX.2 f 7.3643 0.4541 8.2612 6.4673
B6.PWD-ChrX.3 f 6.0143 0.6421 7.2828 4.7458
B6.PWD-ChrY f 4.6722 0.4004 5.4633 3.8812




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA