Project measure / variable:   Donahue14   litter_interval

ID, description, units MPD:42302   litter_interval   mean litter interval   [wks]  
Data set, strains Donahue14   BXD   40 strains     sex: f     age: 3-60wks
Procedure colony observation
Ontology mappings

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  STRAIN COMPARISON PLOT
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Donahue14 - mean litter interval



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested40 strains
Mean of the strain means4.81   wks
Median of the strain means4.79   wks
SD of the strain means± 0.826
Coefficient of variation (CV)0.172
Min–max range of strain means3.20   –   7.05   wks
Mean sample size per strain3.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 30 56.7725 1.8924 0.7558 0.8115
Residuals 126 315.4847 2.5038


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100/RwwJ f 5.55 1.43   6 0.586 0.259 4.0, 7.6 0.89
BXD101/RwwJ f 4.06 1.47   5 0.656 0.361 2.9, 6.4 -0.91
BXD102/RwwJ f 3.5 0.0   1   0.0 0.0 3.5, 3.5 -1.59
BXD43/RwwJ f 4.2 0.0   1   0.0 0.0 4.2, 4.2 -0.74
BXD44/RwwJ f 3.9 0.0   1   0.0 0.0 3.9, 3.9 -1.1
BXD45/RwwJ f 6.7 1.04   4 0.521 0.156 5.5, 8.0 2.29
BXD48a/RwwJ f 4.66 0.532   5 0.238 0.114 4.1, 5.3 -0.18
BXD48/RwwJ f 5.4 1.57   4 0.784 0.29 3.1, 6.6 0.71
BXD49/RwwJ f 4.29 0.725   9 0.242 0.169 3.2, 5.5 -0.63
BXD50/RwwJ f 5.0 2.26   2   1.6 0.453 3.4, 6.6 0.23
BXD51/RwwJ f 3.85 0.636   2   0.45 0.165 3.4, 4.3 -1.16
BXD55/RwwJ f 3.7 0.0   1   0.0 0.0 3.7, 3.7 -1.34
BXD60/RwwJ f 5.21 1.72   7 0.652 0.331 3.0, 7.3 0.48
BXD61/RwwJ f 4.7 0.99   2   0.7 0.211 4.0, 5.4 -0.13
BXD62/RwwJ f 4.83 0.907   3 0.524 0.188 4.0, 5.8 0.02
BXD63/RwwJ f 5.15 1.34   2   0.95 0.261 4.2, 6.1 0.41
BXD64/RwwJ f 5.64 2.57   17 0.622 0.455 3.5, 14.3 1.0
BXD65a/RwwJ f 4.85 1.13   8 0.398 0.232 2.9, 6.4 0.05
BXD65/RwwJ f 3.2 0.0   1   0.0 0.0 3.2, 3.2 -1.95
BXD67/RwwJ f 6.2 3.21   3 1.86 0.518 4.1, 9.9 1.68
BXD68/RwwJ f 4.7 0.265   3 0.153 0.0563 4.4, 4.9 -0.13
BXD69/RwwJ f 4.7 0.0   1   0.0 0.0 4.7, 4.7 -0.13
BXD70/RwwJ f 3.5 0.0   1   0.0 0.0 3.5, 3.5 -1.59
BXD71/RwwJ f 4.37 0.503   3 0.291 0.115 3.9, 4.9 -0.53
BXD73a/RwwJ f 4.1 0.0   1   0.0 0.0 4.1, 4.1 -0.86
BXD73b/RwwJ f 4.82 1.23   11 0.371 0.256 3.7, 8.0 0.01
BXD73/RwwJ f 4.3 0.283   2   0.2 0.0658 4.1, 4.5 -0.62
BXD74/RwwJ f 4.3 0.0   1   0.0 0.0 4.3, 4.3 -0.62
BXD75/RwwJ f 5.25 1.61   4 0.803 0.306 3.7, 7.5 0.53
BXD77/RwwJ f 5.4 1.41   2   1.0 0.262 4.4, 6.4 0.71
BXD79/RwwJ f 7.05 2.47   2   1.75 0.351 5.3, 8.8 2.71
BXD83/RwwJ f 5.67 2.64   3 1.52 0.466 3.9, 8.7 1.04
BXD84/RwwJ f 4.83 1.19   12 0.343 0.246 2.8, 6.5 0.02
BXD85/RwwJ f 4.45 1.8   4 0.9 0.404 3.1, 7.1 -0.44
BXD86/RwwJ f 5.5 1.37   4 0.683 0.248 3.7, 6.9 0.83
BXD87/RwwJ f 4.77 0.902   3 0.521 0.189 3.9, 5.7 -0.05
BXD89/RwwJ f 4.97 0.723   3 0.418 0.146 4.5, 5.8 0.19
BXD90/RwwJ f 5.68 1.69   5 0.757 0.298 4.0, 8.3 1.05
BXD98/RwwJ f 4.87 1.48   13 0.41 0.304 3.0, 7.5 0.07
BXD99/RwwJ f 4.6 0.616   4 0.308 0.134 3.9, 5.4 -0.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100/RwwJ f 5.55 0.646 6.8284 4.2716
BXD101/RwwJ f 4.06 0.7077 5.4604 2.6596
BXD45/RwwJ f 6.7 0.7912 8.2657 5.1343
BXD48a/RwwJ f 4.66 0.7077 6.0604 3.2596
BXD48/RwwJ f 5.4 0.7912 6.9657 3.8343
BXD49/RwwJ f 4.2889 0.5275 5.3327 3.2451
BXD50/RwwJ f 5.0 1.1189 7.2143 2.7857
BXD51/RwwJ f 3.85 1.1189 6.0643 1.6357
BXD60/RwwJ f 5.2143 0.5981 6.3979 4.0307
BXD61/RwwJ f 4.7 1.1189 6.9143 2.4857
BXD62/RwwJ f 4.8333 0.9136 6.6413 3.0254
BXD63/RwwJ f 5.15 1.1189 7.3643 2.9357
BXD64/RwwJ f 5.6412 0.3838 6.4007 4.8817
BXD65a/RwwJ f 4.85 0.5594 5.9571 3.7429
BXD67/RwwJ f 6.2 0.9136 8.0079 4.3921
BXD68/RwwJ f 4.7 0.9136 6.5079 2.8921
BXD71/RwwJ f 4.3667 0.9136 6.1746 2.5587
BXD73b/RwwJ f 4.8182 0.4771 5.7623 3.874
BXD73/RwwJ f 4.3 1.1189 6.5143 2.0857
BXD75/RwwJ f 5.25 0.7912 6.8157 3.6843
BXD77/RwwJ f 5.4 1.1189 7.6143 3.1857
BXD79/RwwJ f 7.05 1.1189 9.2643 4.8357
BXD83/RwwJ f 5.6667 0.9136 7.4746 3.8587
BXD84/RwwJ f 4.8333 0.4568 5.7373 3.9294
BXD85/RwwJ f 4.45 0.7912 6.0157 2.8843
BXD86/RwwJ f 5.5 0.7912 7.0657 3.9343
BXD87/RwwJ f 4.7667 0.9136 6.5746 2.9587
BXD89/RwwJ f 4.9667 0.9136 6.7746 3.1587
BXD90/RwwJ f 5.68 0.7077 7.0804 4.2796
BXD98/RwwJ f 4.8692 0.4389 5.7377 4.0007
BXD99/RwwJ f 4.6 0.7912 6.1657 3.0343




GWAS analysis not available: SNP data is not available for enough strains (at least 4)