Project measure / variable:   Donahue14   litter_size_birth

ID, description, units MPD:42303   litter_size_birth   mean number of pups born   [n]  
Data set, strains Donahue14   BXD   42 strains     sex: f     age: 3-60wks
Procedure colony observation
Ontology mappings

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  STRAIN COMPARISON PLOT
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Donahue14 - mean number of pups born



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested42 strains
Mean of the strain means5.75   n
Median of the strain means5.79   n
SD of the strain means± 0.889
Coefficient of variation (CV)0.155
Min–max range of strain means2.98   –   7.62   n
Mean sample size per strain6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 38 151.5208 3.9874 2.5085 < 0.0001
Residuals 234 371.9493 1.5895


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100/RwwJ f 6.92 1.16   9 0.387 0.168 5.0, 8.8 1.32
BXD101/RwwJ f 4.81 1.67   8 0.59 0.347 2.5, 7.5 -1.06
BXD102/RwwJ f 5.95 0.0707   2   0.05 0.0119 5.9, 6.0 0.23
BXD43/RwwJ f 4.58 1.58   4 0.788 0.344 2.8, 6.0 -1.31
BXD44/RwwJ f 4.5 0.0   1   0.0 0.0 4.5, 4.5 -1.4
BXD45/RwwJ f 5.25 0.777   4 0.388 0.148 4.3, 6.2 -0.56
BXD48a/RwwJ f 6.49 0.561   7 0.212 0.0865 5.5, 7.3 0.83
BXD48/RwwJ f 5.99 0.72   9 0.24 0.12 5.0, 6.8 0.27
BXD49/RwwJ f 5.73 1.48   17 0.36 0.259 3.3, 8.6 -0.02
BXD50/RwwJ f 5.46 0.673   9 0.224 0.123 4.0, 6.2 -0.32
BXD51/RwwJ f 4.53 0.681   3 0.393 0.15 4.0, 5.3 -1.37
BXD55/RwwJ f 5.9 0.707   2   0.5 0.12 5.4, 6.4 0.17
BXD56/RwwJ f 7.3 0.0   1   0.0 0.0 7.3, 7.3 1.75
BXD60/RwwJ f 6.17 1.15   16 0.288 0.187 4.5, 8.0 0.47
BXD61/RwwJ f 6.8 1.13   2   0.8 0.166 6.0, 7.6 1.18
BXD62/RwwJ f 6.08 1.1   5 0.492 0.181 5.0, 7.2 0.37
BXD63/RwwJ f 2.98 1.16   5 0.52 0.39 1.0, 4.0 -3.11
BXD64/RwwJ f 6.63 1.24   20 0.277 0.187 4.3, 9.0 0.99
BXD65a/RwwJ f 6.34 1.44   9 0.48 0.227 4.5, 8.5 0.67
BXD65/RwwJ f 6.8 0.0   1   0.0 0.0 6.8, 6.8 1.18
BXD67/RwwJ f 5.02 1.39   5 0.622 0.277 3.1, 6.7 -0.82
BXD68/RwwJ f 5.92 0.581   6 0.237 0.0982 4.8, 6.3 0.19
BXD69/RwwJ f 5.8 2.68   4 1.34 0.462 2.0, 8.0 0.06
BXD70/RwwJ f 5.08 1.89   9 0.629 0.371 1.0, 7.1 -0.75
BXD71/RwwJ f 5.74 1.52   5 0.68 0.265 3.3, 7.3 -0.01
BXD73a/RwwJ f 6.04 1.35   8 0.477 0.223 4.3, 8.0 0.33
BXD73b/RwwJ f 5.94 0.785   14 0.21 0.132 4.4, 7.3 0.22
BXD73/RwwJ f 5.06 0.445   5 0.199 0.0879 4.6, 5.6 -0.77
BXD74/RwwJ f 5.55 1.2   2   0.85 0.217 4.7, 6.4 -0.22
BXD75/RwwJ f 6.7 1.72   4 0.859 0.256 5.1, 8.6 1.07
BXD77/RwwJ f 4.88 1.48   8 0.524 0.304 3.0, 6.9 -0.98
BXD79/RwwJ f 7.35 0.778   2   0.55 0.106 6.8, 7.9 1.8
BXD81/RwwJ f 5.05 1.77   2   1.25 0.35 3.8, 6.3 -0.79
BXD83/RwwJ f 5.03 0.252   3 0.145 0.05 4.8, 5.3 -0.81
BXD84/RwwJ f 5.16 1.73   19 0.397 0.335 2.0, 8.3 -0.66
BXD85/RwwJ f 6.03 0.523   8 0.185 0.0868 5.3, 6.7 0.32
BXD86/RwwJ f 7.62 1.27   5 0.57 0.167 6.0, 9.0 2.11
BXD87/RwwJ f 5.5 0.346   3 0.2 0.063 5.3, 5.9 -0.28
BXD89/RwwJ f 5.37 0.603   3 0.348 0.112 4.8, 6.0 -0.43
BXD90/RwwJ f 5.77 1.3   10 0.412 0.226 3.5, 8.0 0.02
BXD98/RwwJ f 5.85 0.89   13 0.247 0.152 4.8, 8.0 0.11
BXD99/RwwJ f 5.75 0.532   4 0.266 0.0926 5.2, 6.3 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100/RwwJ f 6.9222 0.4203 7.7502 6.0943
BXD101/RwwJ f 4.8125 0.4457 5.6907 3.9343
BXD102/RwwJ f 5.95 0.8915 7.7064 4.1936
BXD43/RwwJ f 4.575 0.6304 5.8169 3.3331
BXD45/RwwJ f 5.25 0.6304 6.4919 4.0081
BXD48a/RwwJ f 6.4857 0.4765 7.4245 5.5469
BXD48/RwwJ f 5.9889 0.4203 6.8169 5.1609
BXD49/RwwJ f 5.7294 0.3058 6.3318 5.127
BXD50/RwwJ f 5.4556 0.4203 6.2835 4.6276
BXD51/RwwJ f 4.5333 0.7279 5.9674 3.0993
BXD55/RwwJ f 5.9 0.8915 7.6564 4.1436
BXD60/RwwJ f 6.1688 0.3152 6.7897 5.5478
BXD61/RwwJ f 6.8 0.8915 8.5564 5.0436
BXD62/RwwJ f 6.08 0.5638 7.1908 4.9692
BXD63/RwwJ f 2.98 0.5638 4.0908 1.8692
BXD64/RwwJ f 6.635 0.2819 7.1904 6.0796
BXD65a/RwwJ f 6.3444 0.4203 7.1724 5.5165
BXD67/RwwJ f 5.02 0.5638 6.1308 3.9092
BXD68/RwwJ f 5.9167 0.5147 6.9307 4.9026
BXD69/RwwJ f 5.8 0.6304 7.0419 4.5581
BXD70/RwwJ f 5.0778 0.4203 5.9057 4.2498
BXD71/RwwJ f 5.74 0.5638 6.8508 4.6292
BXD73a/RwwJ f 6.0375 0.4457 6.9157 5.1593
BXD73b/RwwJ f 5.9429 0.337 6.6067 5.279
BXD73/RwwJ f 5.06 0.5638 6.1708 3.9492
BXD74/RwwJ f 5.55 0.8915 7.3064 3.7936
BXD75/RwwJ f 6.7 0.6304 7.9419 5.4581
BXD77/RwwJ f 4.875 0.4457 5.7532 3.9968
BXD79/RwwJ f 7.35 0.8915 9.1064 5.5936
BXD81/RwwJ f 5.05 0.8915 6.8064 3.2936
BXD83/RwwJ f 5.0333 0.7279 6.4674 3.5993
BXD84/RwwJ f 5.1632 0.2892 5.733 4.5933
BXD85/RwwJ f 6.025 0.4457 6.9032 5.1468
BXD86/RwwJ f 7.62 0.5638 8.7308 6.5092
BXD87/RwwJ f 5.5 0.7279 6.9341 4.0659
BXD89/RwwJ f 5.3667 0.7279 6.8007 3.9326
BXD90/RwwJ f 5.77 0.3987 6.5555 4.9845
BXD98/RwwJ f 5.8538 0.3497 6.5428 5.1649
BXD99/RwwJ f 5.75 0.6304 6.9919 4.5081




GWAS analysis not available: SNP data is not available for enough strains (at least 4)