Project measure / variable:   Donahue14   litter_size_wean

ID, description, units MPD:42304   litter_size_wean   mean number of pups weaned   [n]  
Data set, strains Donahue14   BXD   42 strains     sex: f     age: 3-60wks
Procedure colony observation
Ontology mappings

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  STRAIN COMPARISON PLOT
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Donahue14 - mean number of pups weaned



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested42 strains
Mean of the strain means4.69   n
Median of the strain means4.77   n
SD of the strain means± 1.13
Coefficient of variation (CV)0.241
Min–max range of strain means1.56   –   6.98   n
Mean sample size per strain6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 38 255.236 6.7167 2.7238 < 0.0001
Residuals 234 577.0311 2.4659


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100/RwwJ f 5.19 1.07   9 0.358 0.207 3.8, 7.3 0.45
BXD101/RwwJ f 1.56 1.5   8 0.53 0.959 -2.77
BXD102/RwwJ f 4.9 0.99   2   0.7 0.202 4.2, 5.6 0.19
BXD43/RwwJ f 3.42 1.96   4 0.982 0.573 1.3, 6.0 -1.12
BXD44/RwwJ f 4.5 0.0   1   0.0 0.0 4.5, 4.5 -0.16
BXD45/RwwJ f 3.15 2.59   4 1.29 0.822 -1.36
BXD48a/RwwJ f 6.24 0.635   7 0.24 0.102 5.1, 7.0 1.38
BXD48/RwwJ f 4.73 0.945   9 0.315 0.2 3.6, 6.0 0.04
BXD49/RwwJ f 5.2 1.56   17 0.378 0.3 2.6, 8.3 0.46
BXD50/RwwJ f 4.0 0.802   9 0.267 0.2 2.4, 5.0 -0.61
BXD51/RwwJ f 2.93 2.7   3 1.56 0.919 -1.56
BXD55/RwwJ f 5.2 0.99   2   0.7 0.19 4.5, 5.9 0.46
BXD56/RwwJ f 6.1 0.0   1   0.0 0.0 6.1, 6.1 1.25
BXD60/RwwJ f 5.21 1.85   16 0.463 0.355 0.47
BXD61/RwwJ f 6.4 0.849   2   0.6 0.133 5.8, 7.0 1.52
BXD62/RwwJ f 4.72 1.33   5 0.594 0.282 3.6, 7.0 0.03
BXD63/RwwJ f 2.1 1.24   5 0.557 0.593 -2.29
BXD64/RwwJ f 3.99 1.93   20 0.431 0.484 -0.62
BXD65a/RwwJ f 4.99 1.89   9 0.63 0.379 3.1, 8.5 0.27
BXD65/RwwJ f 6.8 0.0   1   0.0 0.0 6.8, 6.8 1.88
BXD67/RwwJ f 4.54 1.77   5 0.792 0.39 2.4, 6.7 -0.13
BXD68/RwwJ f 5.42 0.655   6 0.268 0.121 4.4, 6.0 0.65
BXD69/RwwJ f 5.25 3.03   4 1.51 0.576 1.0, 8.0 0.5
BXD70/RwwJ f 4.49 2.0   9 0.665 0.444 -0.17
BXD71/RwwJ f 4.64 1.79   5 0.802 0.387 2.3, 6.7 -0.04
BXD73a/RwwJ f 5.51 1.58   8 0.56 0.287 3.9, 7.7 0.73
BXD73b/RwwJ f 5.26 1.0   14 0.268 0.191 2.9, 6.6 0.51
BXD73/RwwJ f 4.66 0.744   5 0.333 0.16 3.8, 5.3 -0.02
BXD74/RwwJ f 4.95 1.34   2   0.95 0.271 4.0, 5.9 0.23
BXD75/RwwJ f 4.8 2.66   4 1.33 0.554 1.2, 7.4 0.1
BXD77/RwwJ f 4.35 1.78   8 0.63 0.409 1.6, 6.7 -0.3
BXD79/RwwJ f 6.0 0.0   2   0.0 0.0 6.0, 6.0 1.17
BXD81/RwwJ f 2.9 0.566   2   0.4 0.195 2.5, 3.3 -1.58
BXD83/RwwJ f 4.17 1.21   3 0.698 0.29 2.8, 5.1 -0.46
BXD84/RwwJ f 4.05 1.41   19 0.324 0.349 1.7, 6.0 -0.56
BXD85/RwwJ f 4.95 1.51   8 0.534 0.305 2.5, 6.4 0.23
BXD86/RwwJ f 6.98 1.66   5 0.744 0.238 5.3, 9.0 2.04
BXD87/RwwJ f 4.0 1.13   3 0.651 0.282 3.3, 5.3 -0.61
BXD89/RwwJ f 4.87 0.635   3 0.367 0.13 4.5, 5.6 0.16
BXD90/RwwJ f 3.79 1.74   10 0.55 0.459 -0.79
BXD98/RwwJ f 4.74 1.35   13 0.374 0.285 2.4, 7.4 0.05
BXD99/RwwJ f 5.15 0.85   4 0.425 0.165 4.3, 6.3 0.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100/RwwJ f 5.1889 0.5234 6.2202 4.1576
BXD101/RwwJ f 1.5625 0.5552 2.6563 0.4687
BXD102/RwwJ f 4.9 1.1104 7.0876 2.7124
BXD43/RwwJ f 3.425 0.7852 4.9719 1.8781
BXD45/RwwJ f 3.15 0.7852 4.6969 1.6031
BXD48a/RwwJ f 6.2429 0.5935 7.4122 5.0735
BXD48/RwwJ f 4.7333 0.5234 5.7646 3.7021
BXD49/RwwJ f 5.2 0.3809 5.9504 4.4496
BXD50/RwwJ f 4.0 0.5234 5.0313 2.9687
BXD51/RwwJ f 2.9333 0.9066 4.7195 1.1471
BXD55/RwwJ f 5.2 1.1104 7.3876 3.0124
BXD60/RwwJ f 5.2125 0.3926 5.9859 4.4391
BXD61/RwwJ f 6.4 1.1104 8.5876 4.2124
BXD62/RwwJ f 4.72 0.7023 6.1036 3.3364
BXD63/RwwJ f 2.1 0.7023 3.4836 0.7164
BXD64/RwwJ f 3.99 0.3511 4.6818 3.2982
BXD65a/RwwJ f 4.9889 0.5234 6.0202 3.9576
BXD67/RwwJ f 4.54 0.7023 5.9236 3.1564
BXD68/RwwJ f 5.4167 0.6411 6.6797 4.1536
BXD69/RwwJ f 5.25 0.7852 6.7969 3.7031
BXD70/RwwJ f 4.4889 0.5234 5.5202 3.4576
BXD71/RwwJ f 4.64 0.7023 6.0236 3.2564
BXD73a/RwwJ f 5.5125 0.5552 6.6063 4.4187
BXD73b/RwwJ f 5.2571 0.4197 6.084 4.4303
BXD73/RwwJ f 4.66 0.7023 6.0436 3.2764
BXD74/RwwJ f 4.95 1.1104 7.1376 2.7624
BXD75/RwwJ f 4.8 0.7852 6.3469 3.2531
BXD77/RwwJ f 4.35 0.5552 5.4438 3.2562
BXD79/RwwJ f 6.0 1.1104 8.1876 3.8124
BXD81/RwwJ f 2.9 1.1104 5.0876 0.7124
BXD83/RwwJ f 4.1667 0.9066 5.9529 2.3805
BXD84/RwwJ f 4.0474 0.3603 4.7571 3.3376
BXD85/RwwJ f 4.95 0.5552 6.0438 3.8562
BXD86/RwwJ f 6.98 0.7023 8.3636 5.5964
BXD87/RwwJ f 4.0 0.9066 5.7862 2.2138
BXD89/RwwJ f 4.8667 0.9066 6.6529 3.0805
BXD90/RwwJ f 3.79 0.4966 4.7683 2.8117
BXD98/RwwJ f 4.7385 0.4355 5.5965 3.8804
BXD99/RwwJ f 5.15 0.7852 6.6969 3.6031




GWAS analysis not available: SNP data is not available for enough strains (at least 4)