Phenotype measure:   Paigen1   age

ID, description, units MPD:2904   age   age at start of diet (local parameter)   [d]
Data set, strains Paigen1   inbred   41 strains     sex: both
Procedure colony observation
Ontology mappings

  STRAIN COMPARISON PLOT
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Paigen1 - age at start of diet (local parameter)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested41 strains40 strains
Mean of the strain means60.3   d 58.1   d
Median of the strain means59.0   d 58.4   d
SD of the strain means± 4.91 ± 4.25
Coefficient of variation (CV)0.0815 0.0731
Min–max range of strain means52.0   –   73.1   d 50.0   –   65.0   d
Mean sample size per strain9.7   mice 10.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1086.7152 1086.7152 50.8179 < 0.0001
strain 39 9608.0004 246.359 11.5204 < 0.0001
sex:strain 39 6823.6928 174.9665 8.1819 < 0.0001
Residuals 740 15824.5319 21.3845


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 56.0 0.0   10 0.0 0.0 56.0, 56.0 -0.88
129S1/SvImJ m 56.0 0.0   10 0.0 0.0 56.0, 56.0 -0.5
A/J f 63.3 0.905   11 0.273 0.0143 63.0, 66.0 0.61
A/J m 57.0 0.0   10 0.0 0.0 57.0, 57.0 -0.26
AKR/J f 71.0 0.0   10 0.0 0.0 71.0, 71.0 2.18
AKR/J m 57.0 0.0   10 0.0 0.0 57.0, 57.0 -0.26
BALB/cJ f 63.0 0.0   10 0.0 0.0 63.0, 63.0 0.55
BALB/cJ m 63.0 0.0   10 0.0 0.0 63.0, 63.0 1.15
BPH/2J f 70.6 10.8   10 3.43 0.154 58.0, 79.0 2.09
BPH/2J m 60.8 8.85   10 2.8 0.146 58.0, 86.0 0.63
BPN/3J f 57.2 0.632   10 0.2 0.0111 57.0, 59.0 -0.63
BPN/3J m 53.0 0.0   10 0.0 0.0 53.0, 53.0 -1.2
BTBR T+ Itpr3tf/J f 67.7 7.51   3 4.33 0.111 59.0, 72.0 1.5
BTBR T+ Itpr3tf/J m 54.2 2.53   10 0.8 0.0467 53.0, 59.0 -0.92
C3H/HeJ f 52.0 0.0   10 0.0 0.0 52.0, 52.0 -1.69
C3H/HeJ m 62.0 5.7   13 1.58 0.0919 52.0, 65.0 0.92
C57BL/10J f 56.0 0.0   10 0.0 0.0 56.0, 56.0 -0.88
C57BL/10J m 62.0 0.0   10 0.0 0.0 62.0, 62.0 0.92
C57BL/6J f 58.0 0.0   10 0.0 0.0 58.0, 58.0 -0.47
C57BL/6J m 63.0 0.0   10 0.0 0.0 63.0, 63.0 1.15
C57BLKS/J f 58.0 0.0   9 0.0 0.0 58.0, 58.0 -0.47
C57BLKS/J m 58.0 0.0   10 0.0 0.0 58.0, 58.0 -0.03
C57BR/cdJ f 59.0 0.0   10 0.0 0.0 59.0, 59.0 -0.27
C57BR/cdJ m 59.0 0.0   10 0.0 0.0 59.0, 59.0 0.21
C57L/J f 61.0 0.0   10 0.0 0.0 61.0, 61.0 0.14
C57L/J m 61.0 0.0   10 0.0 0.0 61.0, 61.0 0.68
C58/J f 62.3 2.41   11 0.727 0.0387 55.0, 63.0 0.41
C58/J m 50.0 0.0   10 0.0 0.0 50.0, 50.0 -1.91
CAST/EiJ f 56.1 3.38   10 1.07 0.0603 54.0, 61.0 -0.86
CAST/EiJ m 50.0 0.0   10 0.0 0.0 50.0, 50.0 -1.91
CBA/J f 63.0 0.0   10 0.0 0.0 63.0, 63.0 0.55
CBA/J m 63.0 0.0   10 0.0 0.0 63.0, 63.0 1.15
CE/J f 58.0 0.0   10 0.0 0.0 58.0, 58.0 -0.47
CE/J m 52.3 1.87   15 0.483 0.0358 51.0, 55.0 -1.37
CZECHII/EiJ f 73.1 33.8   8 12.0 0.463 49.0, 127.0 2.6
CZECHII/EiJ m 63.5 9.55   8 3.38 0.15 49.0, 73.0 1.27
DBA/1J f 65.0 0.0   10 0.0 0.0 65.0, 65.0 0.95
DBA/1J m 51.0 0.0   10 0.0 0.0 51.0, 51.0 -1.67
DBA/2J f 56.0 0.0   10 0.0 0.0 56.0, 56.0 -0.88
DBA/2J m 65.0 0.0   10 0.0 0.0 65.0, 65.0 1.62
FVB/NJ f 57.0 0.0   10 0.0 0.0 57.0, 57.0 -0.67
FVB/NJ m 57.6 1.68   19 0.385 0.0291 52.0, 59.0 -0.12
I/LnJ f 57.0 0.0   10 0.0 0.0 57.0, 57.0 -0.67
I/LnJ m 57.0 0.0   10 0.0 0.0 57.0, 57.0 -0.26
KK/HlJ f 63.0 0.0   10 0.0 0.0 63.0, 63.0 0.55
KK/HlJ m 52.8 3.08   19 0.706 0.0582 50.0, 56.0 -1.25
LP/J f 63.0 0.0   10 0.0 0.0 63.0, 63.0 0.55
LP/J m 63.0 0.0   10 0.0 0.0 63.0, 63.0 1.15
MOLF/EiJ f 55.7 0.5   9 0.167 0.00898 55.0, 56.0 -0.94
MOLF/EiJ m 61.0 12.3   10 3.9 0.202 49.0, 86.0 0.68
NOD/ShiLtJ f 59.0 0.0   10 0.0 0.0 59.0, 59.0 -0.27
NOD/ShiLtJ m 61.4 3.07   13 0.851 0.05 56.0, 63.0 0.77
NON/ShiLtJ f 59.0 0.0   10 0.0 0.0 59.0, 59.0 -0.27
NON/ShiLtJ m 59.0 0.0   10 0.0 0.0 59.0, 59.0 0.21
NZB/BlNJ f 54.8 2.4   11 0.724 0.0438 54.0, 62.0 -1.12
NZB/BlNJ m 55.0 0.0   9 0.0 0.0 55.0, 55.0 -0.73
NZW/LacJ f 56.0 2.34   12 0.674 0.0417 55.0, 61.0 -0.88
NZW/LacJ m 52.8 2.09   11 0.63 0.0395 51.0, 55.0 -1.25
PERA/EiJ f 64.5 14.5   8 5.12 0.225 47.0, 75.0 0.85
PERA/EiJ m 61.0 16.2   4 8.08 0.265 47.0, 75.0 0.68
P/J f 59.0 0.0   10 0.0 0.0 59.0, 59.0 -0.27
P/J m 59.0 0.0   10 0.0 0.0 59.0, 59.0 0.21
PL/J f 65.0 0.0   10 0.0 0.0 65.0, 65.0 0.95
PL/J m 53.6 2.03   17 0.492 0.0378 52.0, 56.0 -1.06
RBF/DnJ f 59.0 0.0   10 0.0 0.0 59.0, 59.0 -0.27
RBF/DnJ m 58.8 0.603   11 0.182 0.0103 57.0, 59.0 0.16
RF/J f 57.0 0.0   10 0.0 0.0 57.0, 57.0 -0.67
RF/J m 57.1 4.85   11 1.46 0.0849 51.0, 67.0 -0.24
RIIIS/J f 64.0 0.0   10 0.0 0.0 64.0, 64.0 0.75
RIIIS/J m 62.8 2.72   12 0.787 0.0434 57.0, 64.0 1.1
SJL/J f 66.0 0.0   10 0.0 0.0 66.0, 66.0 1.16
SJL/J m 64.0 0.0   10 0.0 0.0 64.0, 64.0 1.39
SM/J f 55.0 0.0   10 0.0 0.0 55.0, 55.0 -1.08
SM/J m 55.0 0.0   12 0.0 0.0 55.0, 55.0 -0.73
SPRET/EiJ f 56.6 0.535   7 0.202 0.00945 56.0, 57.0 -0.75
SPRET/EiJ m 55.4 0.548   5 0.245 0.00989 55.0, 56.0 -0.64
SWR/J f 64.0 0.0   10 0.0 0.0 64.0, 64.0 0.75
SWR/J m 62.4 3.07   13 0.851 0.0492 57.0, 64.0 1.01
WSB/EiJ f 54.7 1.0   9 0.333 0.0183 52.0, 55.0 -1.14
WSB/EiJ m 55.0 0.0   10 0.0 0.0 55.0, 55.0 -0.73
YBR/EiJ f 57.0 0.0   5 0.0 0.0 57.0, 57.0 -0.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 56.0 1.4623 58.8708 53.1292
129S1/SvImJ m 56.0 1.4623 58.8708 53.1292
A/J f 63.2727 1.3943 66.01 60.5355
A/J m 57.0 1.4623 59.8708 54.1292
AKR/J f 71.0 1.4623 73.8708 68.1292
AKR/J m 57.0 1.4623 59.8708 54.1292
BALB/cJ f 63.0 1.4623 65.8708 60.1292
BALB/cJ m 63.0 1.4623 65.8708 60.1292
BPH/2J f 70.6 1.4623 73.4708 67.7292
BPH/2J m 60.8 1.4623 63.6708 57.9292
BPN/3J f 57.2 1.4623 60.0708 54.3292
BPN/3J m 53.0 1.4623 55.8708 50.1292
BTBR T+ Itpr3tf/J f 67.6667 2.6699 72.9081 62.4253
BTBR T+ Itpr3tf/J m 54.2 1.4623 57.0708 51.3292
C3H/HeJ f 52.0 1.4623 54.8708 49.1292
C3H/HeJ m 62.0 1.2826 64.5179 59.4821
C57BL/10J f 56.0 1.4623 58.8708 53.1292
C57BL/10J m 62.0 1.4623 64.8708 59.1292
C57BL/6J f 58.0 1.4623 60.8708 55.1292
C57BL/6J m 63.0 1.4623 65.8708 60.1292
C57BLKS/J f 58.0 1.5414 61.0261 54.9739
C57BLKS/J m 58.0 1.4623 60.8708 55.1292
C57BR/cdJ f 59.0 1.4623 61.8708 56.1292
C57BR/cdJ m 59.0 1.4623 61.8708 56.1292
C57L/J f 61.0 1.4623 63.8708 58.1292
C57L/J m 61.0 1.4623 63.8708 58.1292
C58/J f 62.2727 1.3943 65.01 59.5355
C58/J m 50.0 1.4623 52.8708 47.1292
CAST/EiJ f 56.1 1.4623 58.9708 53.2292
CAST/EiJ m 50.0 1.4623 52.8708 47.1292
CBA/J f 63.0 1.4623 65.8708 60.1292
CBA/J m 63.0 1.4623 65.8708 60.1292
CE/J f 58.0 1.4623 60.8708 55.1292
CE/J m 52.2667 1.194 54.6107 49.9226
CZECHII/EiJ f 73.125 1.635 76.3347 69.9153
CZECHII/EiJ m 63.5 1.635 66.7097 60.2903
DBA/1J f 65.0 1.4623 67.8708 62.1292
DBA/1J m 51.0 1.4623 53.8708 48.1292
DBA/2J f 56.0 1.4623 58.8708 53.1292
DBA/2J m 65.0 1.4623 67.8708 62.1292
FVB/NJ f 57.0 1.4623 59.8708 54.1292
FVB/NJ m 57.5789 1.0609 59.6617 55.4962
I/LnJ f 57.0 1.4623 59.8708 54.1292
I/LnJ m 57.0 1.4623 59.8708 54.1292
KK/HlJ f 63.0 1.4623 65.8708 60.1292
KK/HlJ m 52.8421 1.0609 54.9248 50.7594
LP/J f 63.0 1.4623 65.8708 60.1292
LP/J m 63.0 1.4623 65.8708 60.1292
MOLF/EiJ f 55.6667 1.5414 58.6928 52.6405
MOLF/EiJ m 61.0 1.4623 63.8708 58.1292
NOD/ShiLtJ f 59.0 1.4623 61.8708 56.1292
NOD/ShiLtJ m 61.3846 1.2826 63.9025 58.8667
NON/ShiLtJ f 59.0 1.4623 61.8708 56.1292
NON/ShiLtJ m 59.0 1.4623 61.8708 56.1292
NZB/BlNJ f 54.8182 1.3943 57.5554 52.0809
NZB/BlNJ m 55.0 1.5414 58.0261 51.9739
NZW/LacJ f 56.0 1.3349 58.6207 53.3793
NZW/LacJ m 52.8182 1.3943 55.5554 50.0809
PERA/EiJ f 64.5 1.635 67.7097 61.2903
PERA/EiJ m 61.0 2.3122 65.5392 56.4608
P/J f 59.0 1.4623 61.8708 56.1292
P/J m 59.0 1.4623 61.8708 56.1292
PL/J f 65.0 1.4623 67.8708 62.1292
PL/J m 53.6471 1.1216 55.8489 51.4452
RBF/DnJ f 59.0 1.4623 61.8708 56.1292
RBF/DnJ m 58.8182 1.3943 61.5554 56.0809
RF/J f 57.0 1.4623 59.8708 54.1292
RF/J m 57.0909 1.3943 59.8281 54.3537
RIIIS/J f 64.0 1.4623 66.8708 61.1292
RIIIS/J m 62.8333 1.3349 65.454 60.2126
SJL/J f 66.0 1.4623 68.8708 63.1292
SJL/J m 64.0 1.4623 66.8708 61.1292
SM/J f 55.0 1.4623 57.8708 52.1292
SM/J m 55.0 1.3349 57.6207 52.3793
SPRET/EiJ f 56.5714 1.7478 60.0027 53.1401
SPRET/EiJ m 55.4 2.0681 59.46 51.34
SWR/J f 64.0 1.4623 66.8708 61.1292
SWR/J m 62.3846 1.2826 64.9025 59.8667
WSB/EiJ f 54.6667 1.5414 57.6928 51.6405
WSB/EiJ m 55.0 1.4623 57.8708 52.1292


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 56.0 1.034 58.03 53.97
A/J both 60.1364 1.0103 62.1197 58.153
AKR/J both 64.0 1.034 66.03 61.97
BALB/cJ both 63.0 1.034 65.03 60.97
BPH/2J both 65.7 1.034 67.73 63.67
BPN/3J both 55.1 1.034 57.13 53.07
BTBR T+ Itpr3tf/J both 60.9333 1.5221 63.9214 57.9453
C3H/HeJ both 57.0 0.9725 58.9093 55.0907
C57BL/10J both 59.0 1.034 61.03 56.97
C57BL/6J both 60.5 1.034 62.53 58.47
C57BLKS/J both 58.0 1.0624 60.0856 55.9144
C57BR/cdJ both 59.0 1.034 61.03 56.97
C57L/J both 61.0 1.034 63.03 58.97
C58/J both 56.1364 1.0103 58.1197 54.153
CAST/EiJ both 53.05 1.034 55.08 51.02
CBA/J both 63.0 1.034 65.03 60.97
CE/J both 55.1333 0.9439 56.9865 53.2802
CZECHII/EiJ both 68.3125 1.1561 70.5821 66.0429
DBA/1J both 58.0 1.034 60.03 55.97
DBA/2J both 60.5 1.034 62.53 58.47
FVB/NJ both 57.2895 0.9033 59.0628 55.5161
I/LnJ both 57.0 1.034 59.03 54.97
KK/HlJ both 57.9211 0.9033 59.6944 56.1477
LP/J both 63.0 1.034 65.03 60.97
MOLF/EiJ both 58.3333 1.0624 60.4189 56.2477
NOD/ShiLtJ both 60.1923 0.9725 62.1016 58.283
NON/ShiLtJ both 59.0 1.034 61.03 56.97
NZB/BlNJ both 54.9091 1.0392 56.9493 52.8689
NZW/LacJ both 54.4091 0.9652 56.3039 52.5143
PERA/EiJ both 62.75 1.4159 65.5297 59.9703
P/J both 59.0 1.034 61.03 56.97
PL/J both 59.3235 0.9215 61.1325 57.5145
RBF/DnJ both 58.9091 1.0103 60.8924 56.9258
RF/J both 57.0455 1.0103 59.0288 55.0621
RIIIS/J both 63.4167 0.99 65.3602 61.4731
SJL/J both 65.0 1.034 67.03 62.97
SM/J both 55.0 0.99 56.9436 53.0564
SPRET/EiJ both 55.9857 1.3539 58.6436 53.3278
SWR/J both 63.1923 0.9725 65.1016 61.283
WSB/EiJ both 54.8333 1.0624 56.9189 52.7477




  GWAS USING LINEAR MIXED MODELS