Project measure / variable:   Jax5   latency_first_litter

ID, description, units MPD:31402   latency_first_litter   latency to first litter per dam, dam age at first litter minus age at mating   [wks]  
Data set, strains Jax5   inbred   35 strains     sex: f     age: 6-40wks
Procedure colony observation
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Jax5 - latency to first litter per dam, dam age at first litter minus age at mating



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested35 strains
Mean of the strain means7.49   wks
Median of the strain means7.24   wks
SD of the strain means± 1.36
Coefficient of variation (CV)0.181
Min–max range of strain means4.89   –   11.6   wks
Mean sample size per strain46.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 34 2687.9423 79.0571 16.596 < 0.0001
Residuals 1583 7540.8364 4.7636


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J f 8.37 2.59   49 0.37 0.309 5.0, 15.0 0.65
129S1/SvImJ f 6.34 1.43   47 0.209 0.226 3.0, 13.0 -0.85
129X1/SvJ f 7.6 1.73   48 0.25 0.228 5.0, 12.0 0.08
A/J f 7.24 2.2   51 0.308 0.304 5.0, 17.0 -0.19
AKR/J f 6.76 1.55   49 0.221 0.229 5.0, 14.0 -0.54
B6.129P2-Apoetm1Unc/J f 6.64 2.0   50 0.282 0.301 5.0, 16.0 -0.63
B6(Cg)-Tyrc-2J/J f 4.89 1.88   18 0.442 0.384 3.0, 9.0 -1.92
BALB/cByJ f 8.74 2.06   43 0.314 0.236 6.0, 15.0 0.92
BALB/cJ f 10.0 3.06   50 0.432 0.304 5.0, 20.0 1.85
C3HeB/FeJ f 6.26 1.24   34 0.212 0.198 5.0, 12.0 -0.91
C3H/HeJ f 7.04 1.75   50 0.247 0.248 3.0, 11.0 -0.33
C3H/HeOuJ f 6.58 0.971   50 0.137 0.148 5.0, 10.0 -0.67
C57BL/10J f 7.24 2.23   50 0.315 0.308 4.0, 16.0 -0.19
C57BL/6J f 5.53 0.987   51 0.138 0.178 3.0, 8.0 -1.45
C57BLKS/J f 8.04 2.69   45 0.401 0.334 5.0, 19.0 0.41
C57L/J f 8.62 2.62   42 0.405 0.304 6.0, 16.0 0.83
CAST/EiJ f 11.6 5.35   49 0.764 0.461 4.0, 26.0 3.03
CBA/CaJ f 7.02 1.39   49 0.199 0.198 3.0, 11.0 -0.35
CBA/J f 8.18 1.75   49 0.25 0.214 5.0, 13.0 0.51
DBA/1J f 6.92 1.21   50 0.171 0.175 5.0, 10.0 -0.42
DBA/1LacJ f 6.45 0.937   49 0.134 0.145 5.0, 10.0 -0.77
DBA/2J f 7.41 1.98   49 0.283 0.267 3.0, 13.0 -0.06
FVB/NJ f 6.62 1.63   50 0.23 0.246 5.0, 15.0 -0.64
KK/HlJ f 6.2 1.68   25 0.337 0.271 4.0, 10.0 -0.95
LP/J f 8.9 2.68   50 0.379 0.301 6.0, 19.0 1.04
MRL/MpJ f 7.26 1.58   50 0.223 0.217 5.0, 12.0 -0.17
NOD.CB17-Prkdcscid/J f 8.26 1.63   50 0.23 0.197 6.0, 13.0 0.57
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 5.64 2.95   22 0.63 0.524 3.0, 12.0 -1.37
NOD/ShiLtJ f 8.72 1.9   50 0.268 0.217 4.0, 14.0 0.91
NZB/BlNJ f 8.7 2.6   50 0.368 0.299 6.0, 19.0 0.89
NZW/LacJ f 7.0 1.31   50 0.185 0.187 5.0, 11.0 -0.36
PL/J f 9.65 3.83   49 0.548 0.397 6.0, 24.0 1.59
SJL/J f 6.54 1.31   50 0.186 0.201 5.0, 10.0 -0.7
SM/J f 7.44 2.02   50 0.286 0.272 5.0, 15.0 -0.04
SWR/J f 7.78 1.54   50 0.218 0.198 5.0, 13.0 0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J f 8.3673 0.3118 8.9789 7.7558
129S1/SvImJ f 6.3404 0.3184 6.9649 5.716
129X1/SvJ f 7.6042 0.315 8.2221 6.9863
A/J f 7.2353 0.3056 7.8348 6.6358
AKR/J f 6.7551 0.3118 7.3667 6.1435
B6.129P2-Apoetm1Unc/J f 6.64 0.3087 7.2454 6.0346
B6(Cg)-Tyrc-2J/J f 4.8889 0.5144 5.8979 3.8798
BALB/cByJ f 8.7442 0.3328 9.397 8.0913
BALB/cJ f 10.04 0.3087 10.6454 9.4346
C3HeB/FeJ f 6.2647 0.3743 6.9989 5.5305
C3H/HeJ f 7.04 0.3087 7.6454 6.4346
C3H/HeOuJ f 6.58 0.3087 7.1854 5.9746
C57BL/10J f 7.24 0.3087 7.8454 6.6346
C57BL/6J f 5.5294 0.3056 6.1289 4.9299
C57BLKS/J f 8.0444 0.3254 8.6826 7.4063
C57L/J f 8.619 0.3368 9.2796 7.9585
CAST/EiJ f 11.5918 0.3118 12.2034 10.9803
CBA/CaJ f 7.0204 0.3118 7.632 6.4088
CBA/J f 8.1837 0.3118 8.7953 7.5721
DBA/1J f 6.92 0.3087 7.5254 6.3146
DBA/1LacJ f 6.449 0.3118 7.0606 5.8374
DBA/2J f 7.4082 0.3118 8.0197 6.7966
FVB/NJ f 6.62 0.3087 7.2254 6.0146
KK/HlJ f 6.2 0.4365 7.0562 5.3438
LP/J f 8.9 0.3087 9.5054 8.2946
MRL/MpJ f 7.26 0.3087 7.8654 6.6546
NOD.CB17-Prkdcscid/J f 8.26 0.3087 8.8654 7.6546
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 5.6364 0.4653 6.5491 4.7236
NOD/ShiLtJ f 8.72 0.3087 9.3254 8.1146
NZB/BlNJ f 8.7 0.3087 9.3054 8.0946
NZW/LacJ f 7.0 0.3087 7.6054 6.3946
PL/J f 9.6531 0.3118 10.2646 9.0415
SJL/J f 6.54 0.3087 7.1454 5.9346
SM/J f 7.44 0.3087 8.0454 6.8346
SWR/J f 7.78 0.3087 8.3854 7.1746




  GWAS USING LINEAR MIXED MODELS