MPD: Data set: Brockmann1

Brockmann1: Genetic factors of body, muscle, fat weight and their pleiotropic effects in F2 progeny from 2 intercross populations (2009)

Brockmann GA, Tsaih SW, Neuschl C, Churchill GA, Li R. Genetic factors contributing to obesity and body weight can act through mechanisms affecting muscle weight, fat weight, or both. Physiol Genomics. 2009 Jan 8;36(2):114-26. Epub 2008 Nov 4. PubMed 18984673 FullText

Brockmann1 downloads
QTL projects have several available downloads.
Use the QTL Data Downloads button near the bottom of this page.

Ontology terms mapped to Brockmann1 measures:
MA:0000059 blood
MA:0000141 spleen
MA:0000326 reproductive system
MA:0000358 liver
MA:0000368 kidney
MA:0000472 abdominal fat pad
MA:0002363 quadriceps
MA:0002501 plasma
MA:0002502 serum
MP:0000010 abnormal abdominal fat pad morphology
MP:0000180 abnormal circulating cholesterol level
MP:0000184 abnormal circulating HDL cholesterol level
MP:0001259 abnormal body weight
MP:0001560 abnormal circulating insulin level
MP:0001933 abnormal litter size
MP:0002707 abnormal kidney weight
MP:0004700 abnormal circulating insulin-like growth factor I level
MP:0004847 abnormal liver weight
MP:0004951 abnormal spleen weight
MP:0005667 abnormal circulating leptin level
MP:0011969 abnormal circulating triglyceride level
MP:0020164 abnormal quadriceps weight
VT:0000010 abdominal fat pad morphology trait
VT:0000180 blood cholesterol amount
VT:0000184 blood HDL cholesterol amount
VT:0001259 body mass
VT:0001560 blood insulin amount
VT:0001923 female fertility trait
VT:0002161 female fecundity trait
VT:0002644 blood triglyceride amount
VT:0002707 kidney mass
VT:0003402 liver mass
VT:0004951 spleen mass
VT:0005667 blood leptin amount
VT:0010479 blood insulin-like growth factor amount
VT:0010569 quadriceps morphology trait
VT:1000189 offspring quantity

Participants	G A Brockmann Gary A Churchill The Jackson Laboratory, Bar Harbor, ME With: Tsaih SW, Neuschl C, Li R
Contact	Gary A Churchill gary.churchill@jax.org
Affiliation	QTL Archive
Acknowledgements	The project was supported from the Federal Ministry for Education and Research, Germany (NGFN project 01GS0486, G. A. Brockmann),Deutsche Forschungsgemeinschaft (GRK 1208, C. Neuschl), and National Institute of General Medical Sciences (GM-076468, G. A. Churchill).
Project type	QTL Archive data set
MPD identifiers	Brockmann1 MPD:213
Data changelog	No updates/corrections. Initial release date: 09/2010.

This project is to investigate the relationships between genetic loci and different phenotypes influencing body weight. Two F2 populations were generated: Cross 1 is an intercross of DBA/2 and NMRI8; Cross 2 is an intercross of DBA/2 and DU6i. For both crosses the F2 progeny were fed breeding diet (1) and phenotyped for body weight, muscle weight, fat weight and other related phenotypes (studied phenotypes vary in cross1 vs. cross2). For detailed protocols see Brockmann et al 2009.

(1) Breeding diet: containing 12.5 MJ/kg metabolic energy with an average content of 22.5% crude protein, 5.0% crude fat, 4.5% crude fiber, 6.5% crude ash, 13.5% water, 48.0% N-free extract, vitamins, trace elements, amino acids, and minerals (Altromin diet 1314).

QTL data set parameters:

Cross 1: DBA/2 x NMRI8 Brockmann1
Progenitor strains	DBA/2J NMRI8
Cross direction notation	(DBA/2 x NMRI8) F1 x (DBA/2 x NMRI8) F1
Cross type	F2 intercross
Population size	142 ♀ 133 ♂

Cross 2: DBA/2 x DU6i Brockmann1b
Progenitor strains	DBA/2J DU6i
Cross direction notation	(DBA/2 x DU6i) F1 x (DBA/2 x DU6i) F1
Cross type	F2 intercross
Population size	174 ♀ 228 ♂

Measured phenotypes: To access these data use the QTL Data Downloads button at bottom of page.

Data set	Procedure / Protocol	Drug or Challenge	Phenotype Measure	Panel	Sex	Age	Sample Size (Avg)
Brockmann1	colony observation	(none)	number of offspring per litter: 3 classes [n] pupsize 21301	QTL population	both	6wks	N=138

Brockmann1	body weight	(none)	mouse body weight at week 3 [g] Bw3 21302	QTL population	both	3wks	N=138

Brockmann1	body weight	(none)	mouse body weight at week 4 [g] Bw4 21303	QTL population	both	4wks	N=138

Brockmann1	body weight	(none)	mouse body weight at week 5 [g] Bw5 21304	QTL population	both	5wks	N=138

Brockmann1	body weight	(none)	mouse body weight at week 6 [g] Bw6 21305	QTL population	both	6wks	N=138

Brockmann1	organ weights	(none)	abdominal fat [mg] Afw 21306	QTL population	both	6wks	N=138

Brockmann1	organ weights	(none)	abdominal fat percentage = %(Afw/body weight) [%] Afp 21307	QTL population	both	6wks	N=138

Brockmann1	muscle weights	(none)	muscle weight [mg] Mw 21308	QTL population	both	6wks	N=138

Brockmann1	organ weights	(none)	weight of liver [mg] Liver 21309	QTL population	both	6wks	N=138

Brockmann1	organ weights	(none)	weight of kidney [mg] Kidney 21310	QTL population	both	6wks	N=138

Brockmann1	organ weights	(none)	weight of spleen [mg] Spleen 21311	QTL population	both	6wks	N=138

Brockmann1	colony observation	(none)	number of offspring per litter: 5 classes [n] pupsize_b 21501	QTL population	both	6wks	N=201

Brockmann1	body weight	(none)	mouse body weight at week 6 [g] bw6 21502	QTL population	both	6wks	N=201

Brockmann1	organ weights	(none)	abdominal fat weight [mg] afw 21503	QTL population	both	6wks	N=201

Brockmann1	organ weights	(none)	abdominal fat percentage = %(Afw/body weight) [%] afp 21504	QTL population	both	6wks	N=201

Brockmann1	muscle weights	(none)	muscle weight [mg] mw 21505	QTL population	both	6wks	N=201

Brockmann1	organ weights	(none)	weight of liver [mg] liver 21506	QTL population	both	6wks	N=201

Brockmann1	organ weights	(none)	weight of kidney [mg] kidney 21507	QTL population	both	6wks	N=201

Brockmann1	organ weights	(none)	weight of spleen [mg] spleen 21508	QTL population	both	6wks	N=201

Brockmann1	hormone quantification	(none)	leptin level [ng/mL] leptin 21509	QTL population	both	6wks	N=201

Brockmann1	hormone quantification	(none)	insulin level [pmol/L] insulin 21510	QTL population	both	6wks	N=201

Brockmann1	hormone quantification	(none)	IGF-1 level [ng/mL] igf1 21511	QTL population	both	6wks	N=201

Brockmann1	hormone quantification	(none)	leptin level, log10 transformed [log(ng/mL)] lg_lept 21512	QTL population	both	6wks	N=201

Brockmann1	hormone quantification	(none)	insulin level, log10 transformed [log(pmol/L)] lg_ins 21513	QTL population	both	6wks	N=201

Brockmann1	hormone quantification	(none)	IGF1 level, log10 transformed [log(ng/mL)] lg_igf1 21514	QTL population	both	6wks	N=201

Brockmann1	lipid profile	(none)	triglyceride tg 21515	QTL population	both	6wks	N=201

Brockmann1	lipid profile	(none)	total cholesterol chol 21516	QTL population	both	6wks	N=201

Brockmann1	lipid profile	(none)	HDL cholesterol hdl 21517	QTL population	both	6wks	N=201

Brockmann1	lipid profile	(none)	triglycerides, log transformed lg_tg 21518	QTL population	both	6wks	N=201

To see more rows use the paging control at top.

Cross 1: DBA/2 x NMRI8 Brockmann1 a.k.a. Brockmann_2009a
Excel file: Data_Description_DBA2xNMRI8_Brockmann2009.xlsx
CSV file: Brockmann2009_DBA2xNMRI8_B37_Data.csv
Readme / text file: readme_Brockmann2009a.txt
QC plots, figures, etc.: QCReport_Brockmann2009a.pdf

Cross 2: DBA/2 x DU6i Brockmann1b a.k.a. Brockmann_2009b
Excel file: Data_Description_DBA2xDU6i_Brockmann2009.xlsx
CSV file: Brockmann2009_DBA2xDU6i_B37_Data.csv
Readme / text file: readme_Brockmann2009b.txt
QC plots, figures, etc.: QCReport_Brockmann2009b.pdf