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Project measure / variable:   Donahue17   litter_size_wean

ID, description, units MPD:44303   litter_size_wean   mean number of pups weaned   [n]  
Data set, strains Donahue17   BXD   30 strains     sex: f     age: 3-57wks
Procedure colony observation
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  STRAIN COMPARISON PLOT
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Donahue17 - mean number of pups weaned



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested30 strains
Mean of the strain means4.40   n
Median of the strain means4.54   n
SD of the strain means± 1.13
Coefficient of variation (CV)0.257
Min–max range of strain means2.00   –   6.56   n
Mean sample size per strain7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 29 294.116 10.1419 6.2242 < 0.0001
Residuals 206 335.6625 1.6294


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD11/TyJ f 3.76 1.35   8 0.477 0.359 1.7, 5.8 -0.57
BXD12/TyJ f 4.12 1.2   8 0.425 0.291 2.9, 6.0 -0.25
BXD13/TyJ f 5.84 1.27   8 0.448 0.217 3.3, 7.5 1.27
BXD14/TyJ f 4.05 1.18   8 0.419 0.292 2.5, 5.8 -0.31
BXD15/TyJ f 4.36 1.49   8 0.528 0.342 1.3, 6.0 -0.04
BXD16/TyJ f 4.86 1.93   8 0.682 0.397 2.0, 8.0 0.41
BXD18/TyJ f 3.67 1.29   7 0.487 0.351 1.7, 5.6 -0.65
BXD19/TyJ f 5.01 1.19   8 0.421 0.237 3.2, 6.5 0.54
BXD1/TyJ f 2.83 0.798   8 0.282 0.282 1.8, 3.7 -1.39
BXD21/TyJ f 5.55 2.09   8 0.739 0.376 2.6, 9.0 1.02
BXD22/TyJ f 2.0 0.804   8 0.284 0.402 0.7, 3.3 -2.12
BXD24/TyJ-Cep290rd16/J f 3.46 0.721   7 0.272 0.208 2.5, 4.7 -0.83
BXD27/TyJ f 5.41 1.18   7 0.445 0.217 3.2, 6.7 0.89
BXD28/TyJ f 4.8 1.41   7 0.534 0.294 3.0, 6.6 0.35
BXD29-Tlr4lps-2J/J f 3.11 1.16   8 0.41 0.372 2.2, 4.8 -1.14
BXD29/Ty f 5.1 0.883   8 0.312 0.173 3.8, 6.3 0.62
BXD2/TyJ f 5.19 1.49   8 0.526 0.287 3.5, 7.0 0.7
BXD31/TyJ f 3.5 1.28   8 0.453 0.366 2.3, 6.0 -0.8
BXD32/TyJ f 5.21 0.551   8 0.195 0.106 4.3, 6.0 0.72
BXD33/TyJ f 2.31 0.799   8 0.282 0.346 0.8, 3.3 -1.85
BXD34/TyJ f 6.56 1.02   8 0.36 0.155 4.7, 8.0 1.91
BXD36/TyJ f 5.0 1.2   8 0.426 0.241 3.5, 7.0 0.53
BXD38/TyJ f 3.25 0.87   8 0.308 0.268 2.3, 4.6 -1.02
BXD39/TyJ f 5.34 0.904   8 0.32 0.169 4.0, 6.3 0.83
BXD40/TyJ f 4.42 0.373   8 0.132 0.0843 4.0, 5.0 0.02
BXD42/TyJ f 4.66 1.18   8 0.418 0.254 2.8, 6.3 0.23
BXD5/TyJ f 3.3 1.13   8 0.401 0.344 1.7, 5.0 -0.97
BXD6/TyJ f 5.07 0.957   8 0.338 0.189 3.2, 6.6 0.59
BXD8/TyJ f 3.91 1.45   8 0.514 0.371 2.1, 6.3 -0.43
BXD9/TyJ f 6.36 2.66   8 0.939 0.417 2.0, 9.0 1.73


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD11/TyJ f 3.7625 0.4513 4.6523 2.8727
BXD12/TyJ f 4.125 0.4513 5.0148 3.2352
BXD13/TyJ f 5.8375 0.4513 6.7273 4.9477
BXD14/TyJ f 4.05 0.4513 4.9398 3.1602
BXD15/TyJ f 4.3625 0.4513 5.2523 3.4727
BXD16/TyJ f 4.8625 0.4513 5.7523 3.9727
BXD18/TyJ f 3.6714 0.4825 4.6226 2.7202
BXD19/TyJ f 5.0125 0.4513 5.9023 4.1227
BXD1/TyJ f 2.825 0.4513 3.7148 1.9352
BXD21/TyJ f 5.55 0.4513 6.4398 4.6602
BXD22/TyJ f 2.0 0.4513 2.8898 1.1102
BXD24/TyJ-Cep290rd16/J f 3.4571 0.4825 4.4084 2.5059
BXD27/TyJ f 5.4143 0.4825 6.3655 4.4631
BXD28/TyJ f 4.8 0.4825 5.7512 3.8488
BXD29-Tlr4lps-2J/J f 3.1125 0.4513 4.0023 2.2227
BXD29/Ty f 5.1 0.4513 5.9898 4.2102
BXD2/TyJ f 5.1875 0.4513 6.0773 4.2977
BXD31/TyJ f 3.5 0.4513 4.3898 2.6102
BXD32/TyJ f 5.2125 0.4513 6.1023 4.3227
BXD33/TyJ f 2.3125 0.4513 3.2023 1.4227
BXD34/TyJ f 6.5625 0.4513 7.4523 5.6727
BXD36/TyJ f 5.0 0.4513 5.8898 4.1102
BXD38/TyJ f 3.25 0.4513 4.1398 2.3602
BXD39/TyJ f 5.3375 0.4513 6.2273 4.4477
BXD40/TyJ f 4.425 0.4513 5.3148 3.5352
BXD42/TyJ f 4.6625 0.4513 5.5523 3.7727
BXD5/TyJ f 3.3 0.4513 4.1898 2.4102
BXD6/TyJ f 5.075 0.4513 5.9648 4.1852
BXD8/TyJ f 3.9125 0.4513 4.8023 3.0227
BXD9/TyJ f 6.3625 0.4513 7.2523 5.4727




  GWAS USING LINEAR MIXED MODELS