Project measure / variable:   Hadsell1   pups_born

ID, description, units MPD:49401   pups_born   number of pups born in second litter (biological)   [n]  
Data set, strains Hadsell1   inbred   31 strains     sex: f     age: 14-18wks
Procedure colony observation
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  STRAIN COMPARISON PLOT
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Hadsell1 - number of pups born in second litter (biological)



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested31 strains
Mean of the strain means6.75   n
Median of the strain means6.12   n
SD of the strain means± 1.91
Coefficient of variation (CV)0.283
Min–max range of strain means3.80   –   13.1   n
Mean sample size per strain9.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 30 1085.7164 36.1905 4.5313 < 0.0001
Residuals 266 2124.4654 7.9867


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.7 2.11   10 0.667 0.37 3.0, 10.0 -0.55
A/J f 4.69 2.94   16 0.734 0.627 1.0, 10.0 -1.08
AKR/J f 7.57 2.23   7 0.841 0.294 5.0, 10.0 0.43
BALB/cByJ f 5.4 3.98   10 1.26 0.737 1.0, 13.0 -0.71
BTBR T+ Itpr3tf/J f 9.25 4.92   12 1.42 0.532 1.0, 15.0 1.31
BUB/BnJ f 7.71 2.06   7 0.778 0.267 5.0, 10.0 0.5
C3H/HeJ f 6.12 2.1   8 0.743 0.343 3.0, 9.0 -0.33
C57BL/6J f 6.0 2.38   7 0.9 0.397 1.0, 8.0 -0.39
C57L/J f 6.86 2.79   7 1.06 0.408 3.0, 10.0 0.06
C58/J f 4.14 2.12   7 0.8 0.511 1.0, 7.0 -1.36
CBA/J f 5.36 2.34   11 0.704 0.435 2.0, 10.0 -0.73
CE/J f 7.67 2.5   9 0.833 0.326 3.0, 10.0 0.48
CZECHII/EiJ f 3.8 2.68   5 1.2 0.706 1.0, 8.0 -1.54
DBA/1J f 6.12 1.96   8 0.693 0.32 4.0, 9.0 -0.33
DBA/2J f 6.0 2.98   8 1.05 0.496 2.0, 9.0 -0.39
FVB/NJ f 9.0 1.31   8 0.463 0.145 7.0, 11.0 1.18
I/LnJ f 6.56 3.09   9 1.03 0.471 2.0, 12.0 -0.1
KK/HlJ f 6.76 2.33   17 0.566 0.345 2.0, 10.0 0.01
LG/J f 8.12 3.14   8 1.11 0.386 3.0, 13.0 0.72
LP/J f 4.0 1.58   5 0.707 0.395 2.0, 6.0 -1.44
MA/MyJ f 5.82 1.89   11 0.569 0.324 3.0, 8.0 -0.49
NOD/ShiLtJ f 9.7 4.81   10 1.52 0.496 1.0, 15.0 1.55
NON/ShiLtJ f 7.42 3.29   12 0.949 0.443 1.0, 12.0 0.35
NZW/LacJ f 5.86 2.44   14 0.653 0.417 2.0, 10.0 -0.46
PL/J f 5.38 2.81   13 0.781 0.523 1.0, 10.0 -0.72
QSi5 f 13.1 2.5   12 0.723 0.191 9.0, 16.0 3.33
RIIIS/J f 5.93 2.6   15 0.672 0.439 2.0, 10.0 -0.43
SEA/GnJ f 8.38 2.92   8 1.03 0.349 3.0, 13.0 0.85
SJL/J f 8.0 3.08   9 1.03 0.385 1.0, 12.0 0.66
SM/J f 5.5 2.07   6 0.847 0.377 3.0, 8.0 -0.65
SWR/J f 7.25 1.67   8 0.59 0.23 4.0, 10.0 0.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.7 0.8937 7.4596 3.9404
A/J f 4.6875 0.7065 6.0786 3.2964
AKR/J f 7.5714 1.0682 9.6745 5.4683
BALB/cByJ f 5.4 0.8937 7.1596 3.6404
BTBR T+ Itpr3tf/J f 9.25 0.8158 10.8563 7.6437
BUB/BnJ f 7.7143 1.0682 9.8174 5.6112
C3H/HeJ f 6.125 0.9992 8.0923 4.1577
C57BL/6J f 6.0 1.0682 8.1031 3.8969
C57L/J f 6.8571 1.0682 8.9603 4.754
C58/J f 4.1429 1.0682 6.246 2.0397
CBA/J f 5.3636 0.8521 7.0413 3.6859
CE/J f 7.6667 0.942 9.5214 5.8119
CZECHII/EiJ f 3.8 1.2639 6.2884 1.3116
DBA/1J f 6.125 0.9992 8.0923 4.1577
DBA/2J f 6.0 0.9992 7.9673 4.0327
FVB/NJ f 9.0 0.9992 10.9673 7.0327
I/LnJ f 6.5556 0.942 8.4103 4.7008
KK/HlJ f 6.7647 0.6854 8.1143 5.4152
LG/J f 8.125 0.9992 10.0923 6.1577
LP/J f 4.0 1.2639 6.4884 1.5116
MA/MyJ f 5.8182 0.8521 7.4959 4.1405
NOD/ShiLtJ f 9.7 0.8937 11.4596 7.9404
NON/ShiLtJ f 7.4167 0.8158 9.0229 5.8104
NZW/LacJ f 5.8571 0.7553 7.3443 4.37
PL/J f 5.3846 0.7838 6.9279 3.8413
QSi5 f 13.0833 0.8158 14.6896 11.4771
RIIIS/J f 5.9333 0.7297 7.37 4.4966
SEA/GnJ f 8.375 0.9992 10.3423 6.4077
SJL/J f 8.0 0.942 9.8548 6.1452
SM/J f 5.5 1.1537 7.7716 3.2284
SWR/J f 7.25 0.9992 9.2173 5.2827




  GWAS USING LINEAR MIXED MODELS