Project measure / variable:   Donahue11   litter_size_wean

ID, description, units MPD:42004   litter_size_wean   mean number of pups weaned   [n]  
Data set, strains Donahue11   B6.PWD consomic   26 strains     sex: f     age: 4-55wks
Procedure colony observation
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  STRAIN COMPARISON PLOT
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Donahue11 - mean number of pups weaned



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested26 strains
Mean of the strain means3.68   n
Median of the strain means3.85   n
SD of the strain means± 1.11
Coefficient of variation (CV)0.302
Min–max range of strain means1.68   –   6.65   n
Mean sample size per strain11.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 25 280.0683 11.2027 4.5895 < 0.0001
Residuals 268 654.1675 2.4409


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 4.52 1.34   12 0.388 0.297 1.8, 6.5 0.75
B6.PWD-Chr10.1 f 2.65 1.76   15 0.454 0.663 -0.93
B6.PWD-Chr10.2 f 6.65 2.33   2   1.65 0.351 5.0, 8.3 2.67
B6.PWD-Chr10.3 f 4.04 1.15   21 0.252 0.286 2.4, 6.7 0.32
B6.PWD-Chr11.1 f 3.89 1.72   8 0.607 0.442 0.19
B6.PWD-Chr11.2 f 3.33 0.697   7 0.263 0.209 2.0, 4.0 -0.32
B6.PWD-Chr11.3 f 2.6 0.968   7 0.366 0.372 0.8, 4.0 -0.97
B6.PWD-Chr12 f 4.8 1.02   10 0.322 0.212 3.4, 7.0 1.0
B6.PWD-Chr13 f 2.18 1.48   9 0.492 0.678 -1.35
B6.PWD-Chr14 f 4.66 0.865   8 0.306 0.186 3.2, 5.7 0.88
B6.PWD-Chr15 f 4.26 1.05   10 0.332 0.246 2.5, 6.2 0.52
B6.PWD-Chr16 f 5.25 1.38   6 0.563 0.263 3.0, 6.8 1.41
B6.PWD-Chr17 f 3.84 2.11   9 0.702 0.548 0.14
B6.PWD-Chr18 f 3.87 1.89   14 0.504 0.487 0.7, 7.0 0.17
B6.PWD-Chr19 f 4.29 1.76   16 0.441 0.411 0.55
B6.PWD-Chr2 f 3.11 1.65   9 0.551 0.531 -0.51
B6.PWD-Chr3 f 3.1 1.84   8 0.65 0.593 1.0, 6.5 -0.52
B6.PWD-Chr4 f 1.84 1.3   15 0.335 0.704 -1.65
B6.PWD-Chr5 f 4.65 2.19   12 0.632 0.47 1.8, 9.0 0.87
B6.PWD-Chr6 f 2.63 1.37   8 0.485 0.523 -0.94
B6.PWD-Chr8 f 1.68 1.17   19 0.269 0.697 -1.8
B6.PWD-Chr9 f 3.04 0.964   7 0.364 0.317 1.3, 4.4 -0.58
B6.PWD-ChrX.1 f 3.88 1.8   11 0.542 0.463 0.18
B6.PWD-ChrX.2 f 3.0 1.76   18 0.414 0.586 -0.61
B6.PWD-ChrX.3 f 4.17 1.62   13 0.45 0.389 1.5, 6.4 0.44
B6.PWD-ChrY f 3.79 1.9   20 0.424 0.5 0.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 4.5167 0.451 5.4046 3.6287
B6.PWD-Chr10.1 f 2.6533 0.4034 3.4476 1.8591
B6.PWD-Chr10.2 f 6.65 1.1047 8.8251 4.4749
B6.PWD-Chr10.3 f 4.0381 0.3409 4.7093 3.3669
B6.PWD-Chr11.1 f 3.8875 0.5524 4.975 2.8
B6.PWD-Chr11.2 f 3.3286 0.5905 4.4912 2.1659
B6.PWD-Chr11.3 f 2.6 0.5905 3.7626 1.4374
B6.PWD-Chr12 f 4.8 0.4941 5.7727 3.8273
B6.PWD-Chr13 f 2.1778 0.5208 3.2031 1.1524
B6.PWD-Chr14 f 4.6625 0.5524 5.75 3.575
B6.PWD-Chr15 f 4.26 0.4941 5.2327 3.2873
B6.PWD-Chr16 f 5.25 0.6378 6.5058 3.9942
B6.PWD-Chr17 f 3.8444 0.5208 4.8698 2.8191
B6.PWD-Chr18 f 3.8714 0.4176 4.6935 3.0493
B6.PWD-Chr19 f 4.2875 0.3906 5.0565 3.5185
B6.PWD-Chr2 f 3.1111 0.5208 4.1365 2.0858
B6.PWD-Chr3 f 3.1 0.5524 4.1875 2.0125
B6.PWD-Chr4 f 1.84 0.4034 2.6342 1.0458
B6.PWD-Chr5 f 4.65 0.451 5.538 3.762
B6.PWD-Chr6 f 2.625 0.5524 3.7125 1.5375
B6.PWD-Chr8 f 1.6842 0.3584 2.3899 0.9785
B6.PWD-Chr9 f 3.0429 0.5905 4.2055 1.8802
B6.PWD-ChrX.1 f 3.8818 0.4711 4.8093 2.9544
B6.PWD-ChrX.2 f 3.0 0.3682 3.725 2.275
B6.PWD-ChrX.3 f 4.1692 0.4333 5.0224 3.3161
B6.PWD-ChrY f 3.79 0.3494 4.4778 3.1022




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA