MPD: Phenotype measures mapped to MA:0000573, head or neck organ

Phenotype measures associated with ontology term
MA:0000573 'head or neck organ'

All measures in this list are mapped to the ontology descendants of MA:0000573. None are mapped to MA:0000573 directly.

MA:0000129 thyroid gland
MA:0000168 brain
MA:0000188 corpus callosum
MA:0000191 hippocampus
MA:0000198 cerebellum
MA:0000236 ear
MA:0000259 auricle
MA:0000261 eye
MA:0000262 eye anterior chamber
MA:0000266 cornea
MA:0000268 eyelid
MA:0000273 iris
MA:0000275 lens
MA:0000276 retina
MA:0000278 optic disc
MA:0000281 nose
MA:0000817 brain subventricular zone
MA:0000941 temporal cortex
MA:0000946 dentate gyrus granule cell layer
MA:0001283 hyaloid vascular plexus
MA:0001292 pupil
MA:0002462 vitreous body
MA:0002723 hippocampal commissure
MA:0002770 semicircular duct ampulla

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Bopp1:4	Bopp1	health assessment	Plasmodium berghei	percentage of parasites in brain relative to all organs tested [%] luciferase_brain 36404	inbred	28	both	8-12wks	N=2	2010

Brich1:1	Brich1	metabolite quantification	(none)	tau phosphorylation level [score] level 12801	QTL population		f	3wks	N=51	2003

Brinkmeyer1:33	Brinkmeyer1	RNA expression profiling	Theiler's murine encephalomyelitis virus	TMEV transcript abundance (normalized), post infection TMEV 64433 day 7 day 28	CC	4	both	4wks	N=1	2017

Chang1:1	Chang1	electroretinography	(none)	a-wave amplitude of rod photoreceptors (ERG) [µV] rod_Awave 15701	inbred	16	both	>7wks	N=15	2008

Chang1:2	Chang1	electroretinography	(none)	b-wave amplitude of rod photoreceptors (ERG) [µV] rod_Bwave 15702	inbred	17	both	>7wks	N=15	2008

Chang1:5	Chang1	electroretinography	(none)	b-wave amplitude of cone photoreceptors (ERG) [µV] cone_Bwave 15705	inbred	16	both	>7wks	N=14	2008

Chang1:6	Chang1	organ dimensions	(none)	eye diameter [mm] diameter 15706	inbred	17	both	>7wks	N=14	2008

Chang2:1	Chang2	slit lamp	(none)	eyeless [frequency rate] eye_dysmorpho 42701	B6.PWD consomic w/par	28	both	44-61wks	N=9	2012

Chang2:2	Chang2	slit lamp	(none)	corneal opacity [frequency rate] corneal_opacity 42702	B6.PWD consomic w/par	28	both	44-61wks	N=9	2012

Chang2:3	Chang2	slit lamp	(none)	punctate cataract [frequency rate] cataract_punctate 42703	B6.PWD consomic w/par	28	both	44-61wks	N=9	2012

Chang2:4	Chang2	ophthalmoscopy	(none)	retinal spots (multifocal circumscribed areas of hypopigmentation) [frequency rate] retinal_spots 42704	B6.PWD consomic w/par	28	both	44-61wks	N=9	2012

Chesler3:91	Chesler3	organ weights	(none)	brain weight [g] brain_wt 43591	CC pre w/par	181	both	7-15wks	N=1	2011

Churchill1:8	Churchill1	organ dimensions	(none)	ear pinal length [mm] ear_length 17108	F1 8way	63	both	7-8wks	N=5	2004

Crabbe2:1	Crabbe2	drug and metabolite quantification	diazepam	brain diazepam and metabolite concentration, 30 min post-injection [ng/g] brain_DZ 15501 8 mg/kg 16 mg/kg	inbred	15	m	6-7wks	N=8	1998

Crabbe2:3	Crabbe2	drug and metabolite quantification	diazepam	brain diazepam and metabolite concentration, <5 min post-injection, after rotarod [ng/g] brain_DZ20 15503 trial block1 trial block2	inbred	15	m	6-7wks	N=13	1998

Crusio1:45	Crusio1	organ weights	(none)	brain weight [g] brain_wt 62045	BXD w/par	55	both	12-16wks	N=8	2018

Crusio1:46	Crusio1	organ weights	(none)	brain weight as percentage of total body weight [%] brain_wt_pct 62046	BXD w/par	55	both	12-16wks	N=8	2018

Crusio1:48	Crusio1	histopathology	(none)	total hippocampus size (arbitrary units) hippocampus 62048 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:50	Crusio1	histopathology	(none)	size of intra- and infrapyramidal mossy fibers (arbitrary units) iipmf 62050 left right	BXD w/par	55	both	12-16wks	N=4	2018

Crusio1:52	Crusio1	histopathology	(none)	percentage of hippocampus that is Intra- and infrapyramidal mossy fibers [%] iipmf_pct 62052 left right mean	BXD w/par	55	both	12-16wks	N=4	2018

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