Phenotype measure:   Chang1   diameter

ID, description, units MPD:15706   diameter   eye diameter   [mm]
Data set, strains Chang1   inbred   15 strains     sex: both     age: >7wks
Procedure organ dimensions
Ontology mappings

  STRAIN COMPARISON PLOT
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Chang1 - eye diameter



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested15 strains9 strains
Mean of the strain means3.40   mm 3.60   mm
Median of the strain means3.34   mm 3.60   mm
SD of the strain means± 0.197 ± 0.243
Coefficient of variation (CV)0.0579 0.0675
Min–max range of strain means3.13   –   3.75   mm 3.27   –   4.00   mm
Mean sample size per strain10.4   mice 6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.2011 1.2011 7.095 0.0082
strain 6 4.2874 0.7146 4.2211 0.0005
sex:strain 6 0.9428 0.1571 0.9282 0.4752
Residuals 246 41.6433 0.1693


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 3.24 0.277   14 0.0739 0.0853 2.9, 3.7 -0.82
BALB/cByJ f 3.34 0.291   10 0.0921 0.0872 2.9, 3.8 -0.31
BALB/cByJ m 3.4 0.579   5 0.259 0.17 2.5, 4.1 -0.84
BALB/cJ f 3.2 0.278   9 0.0928 0.087 3.0, 3.8 -1.02
C57BL/10J f 3.3 0.306   14 0.0819 0.0928 2.8, 3.8 -0.51
C57BL/6J f 3.53 0.41   60 0.053 0.116 2.0, 4.3 0.66
C57BL/6J m 3.7 0.451   88 0.048 0.122 2.4, 4.6 0.39
C57BR/cdJ f 3.56 0.195   5 0.0872 0.0548 3.4, 3.9 0.81
CAST/EiJ f 3.48 0.55   4 0.275 0.158 3.0, 4.0 0.4
CE/J f 3.64 0.422   10 0.133 0.116 3.0, 4.3 1.22
CE/J m 4.0 0.158   5 0.0707 0.0395 3.8, 4.2 1.63
CZECHII/EiJ f 3.45 0.387   4 0.194 0.112 3.0, 3.9 0.25
CZECHII/EiJ m 3.27 0.34   4 0.17 0.104 3.0, 3.7 -1.38
DBA/2J f 3.24 0.439   7 0.166 0.135 2.6, 3.8 -0.82
LP/J f 3.13 0.422   11 0.127 0.135 2.5, 3.8 -1.37
NZW/LacJ f 3.34 0.3   9 0.1 0.0898 3.0, 3.7 -0.31
NZW/LacJ m 3.6 0.141   4 0.0707 0.0393 3.4, 3.7 -0.02
PERA/EiJ f 3.75 0.388   29 0.072 0.103 3.0, 4.4 1.77
PERA/EiJ m 3.94 0.371   17 0.09 0.0941 3.2, 4.6 1.38
PWK/PhJ m 3.6 0.183   4 0.0913 0.0507 3.4, 3.8 -0.02
SPRET/EiJ f 3.15 0.173   4 0.0866 0.055 3.0, 3.3 -1.27
SWR/J m 3.5 0.408   4 0.204 0.117 3.1, 3.9 -0.43
WSB/EiJ f 3.66 0.453   9 0.151 0.124 3.0, 4.4 1.32
WSB/EiJ m 3.43 0.344   6 0.141 0.1 3.0, 3.8 -0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ f 3.34 0.1301 3.5963 3.0837
BALB/cByJ m 3.4 0.184 3.7624 3.0376
C57BL/6J f 3.535 0.0531 3.6396 3.4304
C57BL/6J m 3.7011 0.0439 3.7875 3.6147
CE/J f 3.64 0.1301 3.8963 3.3837
CE/J m 4.0 0.184 4.3624 3.6376
CZECHII/EiJ f 3.45 0.2057 3.8552 3.0448
CZECHII/EiJ m 3.275 0.2057 3.6802 2.8698
NZW/LacJ f 3.3444 0.1371 3.6146 3.0743
NZW/LacJ m 3.6 0.2057 4.0052 3.1948
PERA/EiJ f 3.7483 0.0764 3.8988 3.5978
PERA/EiJ m 3.9412 0.0998 4.1377 3.7446
WSB/EiJ f 3.6556 0.1371 3.9257 3.3854
WSB/EiJ m 3.4333 0.168 3.7642 3.1025


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ both 3.37 0.1127 3.5919 3.1481
C57BL/6J both 3.6181 0.0344 3.6859 3.5502
CE/J both 3.82 0.1127 4.0419 3.5981
CZECHII/EiJ both 3.3625 0.1455 3.649 3.076
NZW/LacJ both 3.4722 0.1236 3.7157 3.2287
PERA/EiJ both 3.8447 0.0628 3.9685 3.721
WSB/EiJ both 3.5444 0.1084 3.758 3.3309




  GWAS USING LINEAR MIXED MODELS