MPD: Data set: Schalkwyk2

Schalkwyk2: Hippocampal microRNA expression in 24 BXD recombinant inbred strains of mice (2012)

Parsons MJ, Grimm C, Paya-Cano JL, Fernandes C, Liu L, Philip VM, Chesler EJ, Nietfeld W, Lehrach H, Schalkwyk LC. Genetic variation in hippocampal microRNA expression differences in C57BL/6 J X DBA/2 J (BXD) recombinant inbred mouse strains. BMC Genomics. 2012 Sep 13;13:476. doi: 10.1186/1471-2164-13-476. PubMed 22974136 FullText

Procedures conducted:

• RNA expression profiling

Hippocampal microRNA expression. Normalized data.

Schalkwyk2 downloads
• Download Schalkwyk2 strain means, SD, N, etc. one row per strain/sex/measure

Ontology terms mapped to Schalkwyk2 measures:

Investigators	Leonard C Schalkwyk King's College London, Institute of Psychiatry, London UK Elissa J Chesler The Jackson Laboratory, Bar Harbor, ME Cathy Fernandes King's College London, Institute of Psychiatry, London UK Lin Liu King's College London, Institute of Psychiatry, London UK Michael J Parsons King's College London, Institute of Psychiatry, London UK Jose L Paya-Cano King's College London, Institute of Psychiatry, London UK
Participants	Grimm C, Nietfeld W, Lehrach H
Contact	Leonard C Schalkwyk Leonard.Schalkwyk@kcl.ac.uk Lab web site
Acknowledgements	Funding provided by European New and Emerging Science and Technology program (NEST 028594)
Project type	Phenotype strain survey data set
MPD identifiers	Schalkwyk2 MPD:481
Data changelog	No updates/corrections. Initial release date: 06/2013.
Formatted citation	Click above to copy-paste the entire citation for this MPD web page.

Mice: BXD w/par 26 strains ♂ age 15-16wks 1 experimental group

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)
Schalkwyk2:1	Schalkwyk2	RNA expression profiling	(none)	miR-15b, hippocampal microRNA expression, relative miR15b 48101	BXD w/par	26	m	15-16wks	N=4

Schalkwyk2:2	Schalkwyk2	RNA expression profiling	(none)	miR-31, hippocampal microRNA expression, relative miR31 48102	BXD w/par	26	m	15-16wks	N=4

Schalkwyk2:3	Schalkwyk2	RNA expression profiling	(none)	miR-34c, hippocampal microRNA expression, relative miR34c 48103	BXD w/par	26	m	15-16wks	N=4

Schalkwyk2:4	Schalkwyk2	RNA expression profiling	(none)	miR-212, hippocampal microRNA expression, relative miR212 48104	BXD w/par	26	m	15-16wks	N=4

Schalkwyk2:5	Schalkwyk2	RNA expression profiling	(none)	miR-301a, hippocampal microRNA expression, relative miR301a 48105	BXD w/par	26	m	15-16wks	N=4