Project measure / variable:   Jaxpheno7   corneal_reflex

ID, description, units MPD:34936   corneal_reflex   eye-blink response to corneal stimulation on horizontal wire-grid (score 0-2)   [score]  
Data set, strains Jaxpheno7   inbred   6 strains     sex: m     age: 10wks
Procedure observation (SHIRPA)
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  STRAIN COMPARISON PLOT
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Jaxpheno7 - eye-blink response to corneal stimulation on horizontal wire-grid (score 0-2)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested6 strains
Mean of the strain means1.22   score
Median of the strain means1.13   score
SD of the strain means± 0.234
Coefficient of variation (CV)0.192
Min–max range of strain means1.00   –   1.64   score
Mean sample size per strain8.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 5 2.6462 0.5292 3.6469 0.0074
Residuals 45 6.5303 0.1451


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J m 1.17 0.408   6 0.167 0.35 1.0, 2.0 -0.21
AKR/J m 1.09 0.302   11 0.0909 0.276 1.0, 2.0 -0.56
BALB/cJ m 1.64 0.505   11 0.152 0.308 1.0, 2.0 1.8
C3H/HeJ m 1.33 0.516   6 0.211 0.387 1.0, 2.0 0.47
C57BL/6J m 1.0 0.0   6 0.0 0.0 1.0, 1.0 -0.94
DBA/2J m 1.09 0.302   11 0.0909 0.276 1.0, 2.0 -0.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1.1667 0.1555 1.4799 0.8534
AKR/J m 1.0909 0.1149 1.3222 0.8596
BALB/cJ m 1.6364 0.1149 1.8677 1.405
C3H/HeJ m 1.3333 0.1555 1.6466 1.0201
C57BL/6J m 1.0 0.1555 1.3132 0.6868
DBA/2J m 1.0909 0.1149 1.3222 0.8596




  GWAS USING LINEAR MIXED MODELS