Tsaih1: QTL mapping in recombinant inbred intercross (RIX) hybrids (2005)
Tsaih SW, Lu L, Airey DC, Williams RW, Churchill GA. Quantitative trait mapping in a diallel cross of recombinant inbred lines.
Mamm Genome. 2005 May;16(5):344-55.
Tsaih1 downloads
QTL projects have several available downloads.
Use the QTL Data Downloads button near the bottom of this page.
QTL projects have several available downloads.
Use the QTL Data Downloads button near the bottom of this page.
Ontology terms mapped to Tsaih1 measures:
| Investigators |
Sharon W Tsaih Gary A Churchill The Jackson Laboratory, Bar Harbor, ME |
| Participants | Lu L, Airey DC, Williams RW |
| Contact | Gary A Churchill gary.churchill@jax.org |
| Affiliated Center | QTL Archive |
| Acknowledgements | This work was supported by the National Institutes of Health (NIH) grants HL55001 and GM070683 and NIMH, NIDA and NSFI grant P20-MH62009. Additional support for this work was provided by the Department of the Army, Medical Division, Grant DAMD-LRD. |
| QTL Archive data set | |
| MPD identifiers | Tsaih1 MPD:181 |
| No updates/corrections. Initial release date: 10/2009. |
We describe and test a method of analysis, based on a linear mixed model, that accounts for the correlation structure of recombinant inbred intercross (RIX) populations. For detailed information see Tsaih et al 2005.
The original file only had genotypes of CxB RI lines. Author used her own R function to impute RIX genotypes from RI lines.
| Progenitor strains | BALB/cByJ C57BL/6ByJ |
| Cross direction notation | See LineName column in phenotype data set |
| Cross type | RI intercross |
| Population size | 105 ♀ 106 ♂ |
| Notes | the RIX phenotype file has 211 mice; the CxB RI line has 8 mice |
Project / data set: Tsaih1 a.k.a. Tsaih_2005
Excel file: Data_Description_RIX_Tsaih2005.xlsx
CSV file: Tsaih2005_B37_pheno_RIX.csv
Readme / text file: Tsaih2005_B37_geno_RI.txt
Readme / text file: Tsaih2005_B37_map.txt
Readme / text file: readme_Tsaih2005.txt