Project measure / variable:   Chang2   corneal_opacity

ID, description, units MPD:42702   corneal_opacity   corneal opacity   [frequency rate]  
Data set, strains Chang2   B6.PWD consomic w/par   28 strains     sex: both     age: 44-61wks
Procedure slit lamp
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  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
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Chang2 - corneal opacity

B6.PWD-Chr10.3B6.PWD-Chr10.1B6.PWD-ChrYB6.PWD-ChrX.1B6.PWD-Chr6B6.PWD-mtB6.PWD-Chr12B6.PWD-Chr14B6.PWD-Chr15B6.PWD-Chr16B6.PWD-Chr18B6.PWD-Chr19B6.PWD-Chr17B6.PWD-Chr5B6.PWD-ChrX.3B6.PWD-Chr11.1B6.PWD-Chr11.2B6.PWD-Chr11.3B6.PWD-Chr10.2B6.PWD-Chr13B6.PWD-Chr8C57BL/6JB6.PWD-ChrX.2PWD/PhJB6.PWD-Chr2B6.PWD-Chr1B6.PWD-Chr3B6.PWD-Chr9 frequency rate 0.00.10.20.30.40.50.60.70.80.91.0femalemale


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means0.0220   frequency rate 0.00446   frequency rate
Median of the strain means0   frequency rate 0   frequency rate
SD of the strain means± 0.0482 ± 0.0236
Coefficient of variation (CV)2.20 5.29
Min–max range of strain means0   –   0.143   frequency rate 0   –   0.125   frequency rate
Mean sample size per strain8.8   mice 8.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0309 0.0309 2.4908 0.1153
strain 27 0.2961 0.011 0.8841 0.6358
sex:strain 27 0.3381 0.0125 1.0093 0.4541
Residuals 424 5.2599 0.0124


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 56 (56)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
B6.PWD-Chr1 f 0.0 0.0   8 0.0 0.0 -0.46
B6.PWD-Chr1 m 0.0 0.0   9 0.0 0.0 -0.19
B6.PWD-Chr10.1 f 0.125 0.354   8 0.125 2.83 2.14
B6.PWD-Chr10.1 m 0.0 0.0   10 0.0 0.0 -0.19
B6.PWD-Chr10.2 f 0.0 0.0   10 0.0 0.0 -0.46
B6.PWD-Chr10.2 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr10.3 f 0.143 0.378   7 0.143 2.65 2.51
B6.PWD-Chr10.3 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr11.1 f 0.0 0.0   8 0.0 0.0 -0.46
B6.PWD-Chr11.1 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr11.2 f 0.0 0.0   7 0.0 0.0 -0.46
B6.PWD-Chr11.2 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr11.3 f 0.0 0.0   7 0.0 0.0 -0.46
B6.PWD-Chr11.3 m 0.0 0.0   9 0.0 0.0 -0.19
B6.PWD-Chr12 f 0.0 0.0   9 0.0 0.0 -0.46
B6.PWD-Chr12 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr13 f 0.0 0.0   8 0.0 0.0 -0.46
B6.PWD-Chr13 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr14 f 0.0 0.0   9 0.0 0.0 -0.46
B6.PWD-Chr14 m 0.0 0.0   9 0.0 0.0 -0.19
B6.PWD-Chr15 f 0.0 0.0   9 0.0 0.0 -0.46
B6.PWD-Chr15 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr16 f 0.0 0.0   11 0.0 0.0 -0.46
B6.PWD-Chr16 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr17 f 0.0 0.0   8 0.0 0.0 -0.46
B6.PWD-Chr17 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr18 f 0.0 0.0   8 0.0 0.0 -0.46
B6.PWD-Chr18 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr19 f 0.0 0.0   8 0.0 0.0 -0.46
B6.PWD-Chr19 m 0.0 0.0   9 0.0 0.0 -0.19
B6.PWD-Chr2 f 0.0 0.0   8 0.0 0.0 -0.46
B6.PWD-Chr2 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr3 f 0.0 0.0   8 0.0 0.0 -0.46
B6.PWD-Chr3 m 0.0 0.0   9 0.0 0.0 -0.19
B6.PWD-Chr5 f 0.0 0.0   10 0.0 0.0 -0.46
B6.PWD-Chr5 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr6 f 0.111 0.333   9 0.111 3.0 1.85
B6.PWD-Chr6 m 0.0 0.0   7 0.0 0.0 -0.19
B6.PWD-Chr8 f 0.0 0.0   11 0.0 0.0 -0.46
B6.PWD-Chr8 m 0.0 0.0   10 0.0 0.0 -0.19
B6.PWD-Chr9 f 0.0 0.0   11 0.0 0.0 -0.46
B6.PWD-Chr9 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-ChrX.1 f 0.125 0.354   8 0.125 2.83 2.14
B6.PWD-ChrX.1 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-ChrX.2 f 0.0 0.0   10 0.0 0.0 -0.46
B6.PWD-ChrX.2 m 0.0 0.0   10 0.0 0.0 -0.19
B6.PWD-ChrX.3 f 0.0 0.0   9 0.0 0.0 -0.46
B6.PWD-ChrX.3 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-ChrY f 0.0 0.0   8 0.0 0.0 -0.46
B6.PWD-ChrY m 0.125 0.354   8 0.125 2.83 5.1
B6.PWD-mt f 0.111 0.333   9 0.111 3.0 1.85
B6.PWD-mt m 0.0 0.0   8 0.0 0.0 -0.19
C57BL/6J f 0.0 0.0   9 0.0 0.0 -0.46
C57BL/6J m 0.0 0.0   9 0.0 0.0 -0.19
PWD/PhJ f 0.0 0.0   11 0.0 0.0 -0.46
PWD/PhJ m 0.0 0.0   7 0.0 0.0 -0.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr1 m 0.0 0.0371 0.073 -0.073
B6.PWD-Chr10.1 f 0.125 0.0394 0.2024 0.0476
B6.PWD-Chr10.1 m 0.0 0.0352 0.0692 -0.0692
B6.PWD-Chr10.2 f 0.0 0.0352 0.0692 -0.0692
B6.PWD-Chr10.2 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr10.3 f 0.1429 0.0421 0.2256 0.0601
B6.PWD-Chr10.3 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr11.1 f 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr11.1 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr11.2 f 0.0 0.0421 0.0827 -0.0827
B6.PWD-Chr11.2 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr11.3 f 0.0 0.0421 0.0827 -0.0827
B6.PWD-Chr11.3 m 0.0 0.0371 0.073 -0.073
B6.PWD-Chr12 f 0.0 0.0371 0.073 -0.073
B6.PWD-Chr12 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr13 f 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr13 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr14 f 0.0 0.0371 0.073 -0.073
B6.PWD-Chr14 m 0.0 0.0371 0.073 -0.073
B6.PWD-Chr15 f 0.0 0.0371 0.073 -0.073
B6.PWD-Chr15 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr16 f 0.0 0.0336 0.066 -0.066
B6.PWD-Chr16 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr17 f 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr17 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr18 f 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr18 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr19 f 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr19 m 0.0 0.0371 0.073 -0.073
B6.PWD-Chr2 f 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr2 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr3 f 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr3 m 0.0 0.0371 0.073 -0.073
B6.PWD-Chr5 f 0.0 0.0352 0.0692 -0.0692
B6.PWD-Chr5 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-Chr6 f 0.1111 0.0371 0.1841 0.0381
B6.PWD-Chr6 m 0.0 0.0421 0.0827 -0.0827
B6.PWD-Chr8 f 0.0 0.0336 0.066 -0.066
B6.PWD-Chr8 m 0.0 0.0352 0.0692 -0.0692
B6.PWD-Chr9 f 0.0 0.0336 0.066 -0.066
B6.PWD-Chr9 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-ChrX.1 f 0.125 0.0394 0.2024 0.0476
B6.PWD-ChrX.1 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-ChrX.2 f 0.0 0.0352 0.0692 -0.0692
B6.PWD-ChrX.2 m 0.0 0.0352 0.0692 -0.0692
B6.PWD-ChrX.3 f 0.0 0.0371 0.073 -0.073
B6.PWD-ChrX.3 m 0.0 0.0394 0.0774 -0.0774
B6.PWD-ChrY f 0.0 0.0394 0.0774 -0.0774
B6.PWD-ChrY m 0.125 0.0394 0.2024 0.0476
B6.PWD-mt f 0.1111 0.0371 0.1841 0.0381
B6.PWD-mt m 0.0 0.0394 0.0774 -0.0774
C57BL/6J f 0.0 0.0371 0.073 -0.073
C57BL/6J m 0.0 0.0371 0.073 -0.073
PWD/PhJ f 0.0 0.0336 0.066 -0.066
PWD/PhJ m 0.0 0.0421 0.0827 -0.0827


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 both 0.0 0.0271 0.0532 -0.0532
B6.PWD-Chr10.1 both 0.0625 0.0264 0.1144 0.0106
B6.PWD-Chr10.2 both 0.0 0.0264 0.0519 -0.0519
B6.PWD-Chr10.3 both 0.0714 0.0288 0.1281 0.0148
B6.PWD-Chr11.1 both 0.0 0.0278 0.0547 -0.0547
B6.PWD-Chr11.2 both 0.0 0.0288 0.0567 -0.0567
B6.PWD-Chr11.3 both 0.0 0.0281 0.0552 -0.0552
B6.PWD-Chr12 both 0.0 0.0271 0.0532 -0.0532
B6.PWD-Chr13 both 0.0 0.0278 0.0547 -0.0547
B6.PWD-Chr14 both 0.0 0.0263 0.0516 -0.0516
B6.PWD-Chr15 both 0.0 0.0271 0.0532 -0.0532
B6.PWD-Chr16 both 0.0 0.0259 0.0509 -0.0509
B6.PWD-Chr17 both 0.0 0.0278 0.0547 -0.0547
B6.PWD-Chr18 both 0.0 0.0278 0.0547 -0.0547
B6.PWD-Chr19 both 0.0 0.0271 0.0532 -0.0532
B6.PWD-Chr2 both 0.0 0.0278 0.0547 -0.0547
B6.PWD-Chr3 both 0.0 0.0271 0.0532 -0.0532
B6.PWD-Chr5 both 0.0 0.0264 0.0519 -0.0519
B6.PWD-Chr6 both 0.0556 0.0281 0.1107 0.0004
B6.PWD-Chr8 both 0.0 0.0243 0.0478 -0.0478
B6.PWD-Chr9 both 0.0 0.0259 0.0509 -0.0509
B6.PWD-ChrX.1 both 0.0625 0.0278 0.1172 0.0078
B6.PWD-ChrX.2 both 0.0 0.0249 0.049 -0.049
B6.PWD-ChrX.3 both 0.0 0.0271 0.0532 -0.0532
B6.PWD-ChrY both 0.0625 0.0278 0.1172 0.0078
B6.PWD-mt both 0.0556 0.0271 0.1087 0.0024
C57BL/6J both 0.0 0.0263 0.0516 -0.0516
PWD/PhJ both 0.0 0.0269 0.0529 -0.0529




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA