Jaxpheno7: Neuromuscular and behavioral testing in males of 6 inbred strains of mice (2010)

Jackson Laboratory   James Denegre   With: Denegre J, Yang Y, Nicholson A, Davis C, Ryan J, McFarland H

         
Jaxpheno7 downloads
• Download Jaxpheno7 project data set     animal data, as uploaded
• Download Jaxpheno7 animal data matrix     with factor-related expansion applied as necessary
• Download Jaxpheno7 strain means, SD, N, etc.     one row per strain/sex/measure
Ontology terms mapped to Jaxpheno7 measures:
  MA:0000007   limb
  MA:0000008   tail
  MA:0000020   back of trunk
  MA:0000025   forelimb
  MA:0000026   hindlimb
  MA:0000044   foot
  MA:0000155   coat hair
  MA:0000259   auricle
  MA:0000261   eye
  MA:0000520   abdomen muscle
  MA:0000615   forelimb muscle
  MA:0000617   forelimb skin
  MA:0002512   digestive system fluid or secretion
  MP:0001348   abnormal lacrimal gland physiology
  MP:0001362   abnormal anxiety-related response
  MP:0001392   abnormal locomotor behavior
  MP:0001406   abnormal gait
  MP:0001504   abnormal posture
  MP:0001510   abnormal coat appearance
  MP:0001513   limb grasping
  MP:0001515   abnormal grip strength
  MP:0001516   abnormal motor coordination/balance
  MP:0001529   abnormal vocalization
  MP:0001761   abnormal urination pattern
  MP:0002061   abnormal aggression-related behavior
  MP:0002066   abnormal motor capabilities/coordination/movement
  MP:0002734   abnormal mechanical nociception
  MP:0002822   catalepsy
  MP:0003461   abnormal response to novel object
  MP:0003492   abnormal involuntary movement
  MP:0003671   abnormal eyelid aperture
  MP:0004142   abnormal muscle tone
  MP:0004262   abnormal physical strength
  MP:0004263   abnormal limb posture
  MP:0005310   abnormal salivary gland physiology
  MP:0005316   abnormal response to tactile stimuli
  MP:0011239   abnormal skin coloration
  MP:0013189   abnormal exploration in a new environment
  MP:0020147   abnormal defecation amount
  VT:0000016   hindlimb conformation trait
  VT:0001392   locomotor behavior trait
  VT:0001516   motor coordination/balance trait
  VT:0001529   vocalization trait
  VT:0001968   tactile sensory behavior trait
  VT:0001970   pain threshold
  VT:0002095   skin pigmentation trait
  VT:0002734   mechanical nociception trait
  VT:0003492   involuntary movement trait
  VT:0003620   urine output
  VT:0004142   muscle tone
  VT:0004262   physical strength trait
  VT:0006276   autonomic nervous system physiology trait
  VT:0010080   skeletal muscle physiology trait
  VT:0010461   excretion behavior trait
  VT:0010462   defecation behavior trait
  VT:0010471   exploratory behavior trait
  VT:0010709   behavioral response to novel object trait
  VT:0010716   anxiety-related behavior trait
  VT:0010726   wildness behavior trait
  VT:0015014   aggression-related behavior trait
  VT:0015094   equilibrioception system trait
  VT:1000000   body conformation trait

Institutional authorship Jackson Laboratory
Investigators James Denegre       The Jackson Laboratory,  Bar Harbor, ME
Participants Denegre J, Yang Y, Nicholson A, Davis C, Ryan J, McFarland H
ContactJames Denegre     james.denegre@jax.org
Affiliated CenterJAX Phenotyping Center
Project type Phenotype strain survey data set
MPD identifiersJaxpheno7     MPD:349
Data changelog No updates/corrections.       Initial release date: 08/2010.
Formatted citation
Click above to copy-paste the entire citation for this MPD web page.
Animals were evaluated in these areas: SHIRPA, rotarod, grip strength.

Procedures conducted:
• observation (SHIRPA)  Behavior, and neurosensory responses (SHIRPA protocol).
• grip strength  Peak tension.
• rotarod  Latency to fall from accelerating rotarod.

Mice: inbred   6 strains   ♂   age 10wks   1 experimental group

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Data set
Procedure / Protocol
Treatment
Phenotype Measure / Variable (click to view)
Panel
No. of Strains
Sex
Age
Sample Size (Avg)
    Jaxpheno7 observation (SHIRPA) (none) body position in view-jar (score 0-5)   [score]  body_position   34901     inbred 6 m 10wks N=8
    Jaxpheno7 observation (SHIRPA) (none) degree of pelvis elevation while in motion in arena (score 0-3)   [score]  pelvic_elevation   34902     inbred 6 m 10wks N=8
    Jaxpheno7 observation (SHIRPA) (none) degree of tail elevation while in forward motion in arena (score 0-4)   [score]  tail_elevation   34903     inbred 6 m 10wks N=8
    Jaxpheno7 observation (SHIRPA) (none) color evaluation of plantar surface and forelimb digits during supine restraint (score 0-2)   [score]  skin_color   34904     inbred 6 m 10wks N=8
    Jaxpheno7 observation (SHIRPA) (none) hindlimb splay evaluation via dorso-ventral view in arena (score 0-2)   [score]  hindlimb_dorsal   34905     inbred 6 m 10wks N=8
    Jaxpheno7 observation (SHIRPA) (none) hindlimb splay evaluation via vertical view in arena (score 0-2)   [score]  limb_pattern   34906     inbred 6 m 10wks N=8
    Jaxpheno7 observation (SHIRPA) (none) transfer (view-jar to arena) provoked response (score 0-4)   [score]  transfer_arousal   34907     inbred 6 m 10wks N=8
    Jaxpheno7 observation (SHIRPA) (none) fear assessment during transfer to arena (score 0-1)   [score]  freeze   34908     inbred 6 m 10wks N=8
    Jaxpheno7 observation (SHIRPA) (none) spontaneous activity level in view-jar (score 0-3)   [score]  activity   34909     inbred 6 m 10wks N=8
    Jaxpheno7 observation (SHIRPA) (none) constant trembling in view-jar (score 0-2)   [score]  tremor   34910     inbred 6 m 10wks N=8
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