MPD: Data set: Jaxpheno7

Animals were evaluated in these areas: SHIRPA, rotarod, grip strength.

Procedures conducted:

• observation (SHIRPA)		Behavior, and neurosensory responses (SHIRPA protocol).
• grip strength		Peak tension.
• rotarod		Latency to fall from accelerating rotarod.

Jaxpheno7 downloads
• Download Jaxpheno7 project data set animal data, as uploaded
• Download Jaxpheno7 animal data matrix with factor-related expansion applied as necessary
• Download Jaxpheno7 strain means, SD, N, etc. one row per strain/sex/measure

Ontology terms mapped to Jaxpheno7 measures:

MA:0000007 limb
MA:0000008 tail
MA:0000020 back of trunk
MA:0000025 forelimb
MA:0000026 hindlimb
MA:0000044 foot
MA:0000155 coat hair
MA:0000259 auricle
MA:0000261 eye
MA:0000520 abdomen muscle
MA:0000615 forelimb muscle
MA:0000617 forelimb skin
MA:0002512 digestive system fluid or secretion
MP:0001348 abnormal lacrimal gland physiology
MP:0001362 abnormal anxiety-related response
MP:0001392 abnormal locomotor behavior
MP:0001406 abnormal gait
MP:0001504 abnormal posture
MP:0001510 abnormal coat appearance
MP:0001513 limb grasping
MP:0001515 abnormal grip strength
MP:0001516 abnormal motor coordination/balance
MP:0001529 abnormal vocalization
MP:0001761 abnormal urination pattern
MP:0002061 abnormal aggression-related behavior
MP:0002066 abnormal motor capabilities/coordination/movement
MP:0002734 abnormal mechanical nociception
MP:0002822 catalepsy
MP:0003461 abnormal response to novel object
MP:0003492 abnormal involuntary movement
MP:0003671 abnormal eyelid aperture
MP:0004142 abnormal muscle tone
MP:0004262 abnormal physical strength
MP:0004263 abnormal limb posture
MP:0005310 abnormal salivary gland physiology
MP:0005316 abnormal response to tactile stimuli
MP:0011239 abnormal skin coloration
MP:0013189 abnormal exploration in a new environment
MP:0020147 abnormal defecation amount
VT:0000016 hindlimb conformation trait
VT:0001392 locomotor behavior trait
VT:0001516 motor coordination/balance trait
VT:0001529 vocalization trait
VT:0001968 tactile sensory behavior trait
VT:0001970 pain threshold
VT:0002095 skin pigmentation trait
VT:0002734 mechanical nociception trait
VT:0003492 involuntary movement trait
VT:0003620 urine output
VT:0004142 muscle tone
VT:0004262 physical strength trait
VT:0006276 autonomic nervous system physiology trait
VT:0010080 skeletal muscle physiology trait
VT:0010461 excretion behavior trait
VT:0010462 defecation behavior trait
VT:0010471 exploratory behavior trait
VT:0010709 behavioral response to novel object trait
VT:0010716 anxiety-related behavior trait
VT:0010726 wildness behavior trait
VT:0015014 aggression-related behavior trait
VT:0015094 equilibrioception system trait
VT:1000000 body conformation trait

Institutional authorship	Jackson Laboratory
Investigators	James Denegre The Jackson Laboratory, Bar Harbor, ME
Participants	Denegre J, Yang Y, Nicholson A, Davis C, Ryan J, McFarland H
Contact	James Denegre james.denegre@jax.org
Affiliated Center	JAX Phenotyping Center
Project type	Phenotype strain survey data set
MPD identifiers	Jaxpheno7 MPD:349
Data changelog	No updates/corrections. Initial release date: 08/2010.
Formatted citation	Click above to copy-paste the entire citation for this MPD web page.

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)
Jaxpheno7:1	Jaxpheno7	observation (SHIRPA)	(none)	body position in view-jar (score 0-5) [score] body_position 34901	inbred	6	m	10wks	N=8

Jaxpheno7:2	Jaxpheno7	observation (SHIRPA)	(none)	degree of pelvis elevation while in motion in arena (score 0-3) [score] pelvic_elevation 34902	inbred	6	m	10wks	N=8

Jaxpheno7:3	Jaxpheno7	observation (SHIRPA)	(none)	degree of tail elevation while in forward motion in arena (score 0-4) [score] tail_elevation 34903	inbred	6	m	10wks	N=8

Jaxpheno7:4	Jaxpheno7	observation (SHIRPA)	(none)	color evaluation of plantar surface and forelimb digits during supine restraint (score 0-2) [score] skin_color 34904	inbred	6	m	10wks	N=8

Jaxpheno7:5	Jaxpheno7	observation (SHIRPA)	(none)	hindlimb splay evaluation via dorso-ventral view in arena (score 0-2) [score] hindlimb_dorsal 34905	inbred	6	m	10wks	N=8

Jaxpheno7:6	Jaxpheno7	observation (SHIRPA)	(none)	hindlimb splay evaluation via vertical view in arena (score 0-2) [score] limb_pattern 34906	inbred	6	m	10wks	N=8

Jaxpheno7:7	Jaxpheno7	observation (SHIRPA)	(none)	transfer (view-jar to arena) provoked response (score 0-4) [score] transfer_arousal 34907	inbred	6	m	10wks	N=8

Jaxpheno7:8	Jaxpheno7	observation (SHIRPA)	(none)	fear assessment during transfer to arena (score 0-1) [score] freeze 34908	inbred	6	m	10wks	N=8

Jaxpheno7:9	Jaxpheno7	observation (SHIRPA)	(none)	spontaneous activity level in view-jar (score 0-3) [score] activity 34909	inbred	6	m	10wks	N=8

Jaxpheno7:10	Jaxpheno7	observation (SHIRPA)	(none)	constant trembling in view-jar (score 0-2) [score] tremor 34910	inbred	6	m	10wks	N=8

Jaxpheno7:11	Jaxpheno7	observation (SHIRPA)	(none)	short sporadic twitches in view-jar (score 0-2) [score] twitch 34911	inbred	6	m	10wks	N=8

Jaxpheno7:12	Jaxpheno7	observation (SHIRPA)	(none)	number of fecal boli in view-jar [n] defecation_jar 34912	inbred	6	m	10wks	N=8

Jaxpheno7:13	Jaxpheno7	observation (SHIRPA)	(none)	number of urine puddles in view-jar [n] urination_jar 34913	inbred	6	m	10wks	N=8

Jaxpheno7:14	Jaxpheno7	observation (SHIRPA)	(none)	number of fecal boli in arena [n] defecation_arena 34914	inbred	6	m	10wks	N=8

Jaxpheno7:15	Jaxpheno7	observation (SHIRPA)	(none)	number of urine puddles in arena [n] urination_arena 34915	inbred	6	m	10wks	N=8

Jaxpheno7:16	Jaxpheno7	observation (SHIRPA)	(none)	incidence of provoked biting during supine restraint (score 0-1) [score] biting 34916	inbred	6	m	10wks	N=8

Jaxpheno7:17	Jaxpheno7	observation (SHIRPA)	(none)	assessment of irritability during supine restraint (score 0-1) [score] irritability 34917	inbred	6	m	10wks	N=8

Jaxpheno7:18	Jaxpheno7	observation (SHIRPA)	(none)	assessment of aggression during supine restraint (score 0-1) [score] aggression 34918	inbred	6	m	10wks	N=8

Jaxpheno7:19	Jaxpheno7	observation (SHIRPA)	(none)	assessment of vocalization during supine restraint (score 0-1) [score] vocal 34919	inbred	6	m	10wks	N=8

Jaxpheno7:20	Jaxpheno7	observation (SHIRPA)	(none)	response to object placed near head (score 0-4) [score] finger_approach 34920	inbred	6	m	10wks	N=8

Jaxpheno7:21	Jaxpheno7	observation (SHIRPA)	(none)	eyelid (palpebral) fissure presentation in arena (score 0-2) [score] palpebral_fissure 34921	inbred	6	m	10wks	N=8

Jaxpheno7:22	Jaxpheno7	observation (SHIRPA)	(none)	status of hair coat in arena (score 0-1) [score] piloerection 34922	inbred	6	m	10wks	N=8

Jaxpheno7:23	Jaxpheno7	observation (SHIRPA)	(none)	response to airpuff from behind in arena (score 0-4) [score] startle_response 34923	inbred	6	m	10wks	N=8

Jaxpheno7:24	Jaxpheno7	observation (SHIRPA)	(none)	trunk curl during tail suspension (score 0-1) [score] trunk_curl 34924	inbred	6	m	10wks	N=8

Jaxpheno7:25	Jaxpheno7	observation (SHIRPA)	(none)	hindlimb grasp during tail suspension (score 0-1) [score] limb_grasping 34925	inbred	6	m	10wks	N=8

Jaxpheno7:26	Jaxpheno7	observation (SHIRPA)	(none)	presence of lacrimal fluid (tears) around eyes during supine restraint (score 0-1) [score] lacrimation 34926	inbred	6	m	10wks	N=8

Jaxpheno7:27	Jaxpheno7	observation (SHIRPA)	(none)	salivation response when provoked with probe between teeth during supine restraint (score 0-2) [score] salivation 34927	inbred	6	m	10wks	N=8

Jaxpheno7:28	Jaxpheno7	observation (SHIRPA)	(none)	gait assessment within the arena (score 0-3) [score] gait 34928	inbred	6	m	10wks	N=8

Jaxpheno7:29	Jaxpheno7	observation (SHIRPA)	(none)	postural response to being held in different positions above arena (score 0-4) [score] positional_passivity 34929	inbred	6	m	10wks	N=8

Jaxpheno7:30	Jaxpheno7	observation (SHIRPA)	(none)	body tone assessed by thumb and index finger compression while on horizontal wire-grid (score 0-2) [score] body_tone 34930	inbred	6	m	10wks	N=8

Jaxpheno7:31	Jaxpheno7	observation (SHIRPA)	(none)	resistance to gentle finger-tip pressure of the hind paws during supine restraint (score 0-4) [score] limb_tone 34931	inbred	6	m	10wks	N=8

Jaxpheno7:32	Jaxpheno7	observation (SHIRPA)	(none)	abdominal tone via palpation during supine restraint (score 0-2) [score] abdominal_tone 34932	inbred	6	m	10wks	N=8

Jaxpheno7:33	Jaxpheno7	observation (SHIRPA)	(none)	touch provoked withdrawal (escape) reflex in arena (score 0-3) [score] touch_escape 34933	inbred	6	m	10wks	N=8

Jaxpheno7:34	Jaxpheno7	observation (SHIRPA)	(none)	forelimb extension towards horizontal wire-grid when lowered by tail (score 0-3) [score] visual_placing 34934	inbred	6	m	10wks	N=8

Jaxpheno7:35	Jaxpheno7	observation (SHIRPA)	(none)	ear pinna withdrawal response to sensory stimulation on horizontal wire-grid (score 0-2) [score] pinna_reflex 34935	inbred	6	m	10wks	N=8

Jaxpheno7:36	Jaxpheno7	observation (SHIRPA)	(none)	eye-blink response to corneal stimulation on horizontal wire-grid (score 0-2) [score] corneal_reflex 34936	inbred	6	m	10wks	N=8

Jaxpheno7:37	Jaxpheno7	observation (SHIRPA)	(none)	withdrawal reflex following toe pinch of hind foot mid-digit on horizontal wire-grid (score 0-4) [score] withdrawal_reflex 34937	inbred	6	m	10wks	N=8

Jaxpheno7:38	Jaxpheno7	observation (SHIRPA)	(none)	extension of opposite foot after toe pinch on horizontal wire-grid (score 0-1) [score] cross_extensor 34938	inbred	6	m	10wks	N=8

Jaxpheno7:39	Jaxpheno7	observation (SHIRPA)	(none)	ability of forelimbs and hindlimbs to grasp wire-screen held in horizontal rotation (score 0-4) [score] wire_grip 34939	inbred	6	m	10wks	N=8

Jaxpheno7:40	Jaxpheno7	observation (SHIRPA)	(none)	characteristic movement in response to supine recumbent position (score 0-3) [score] righting 34940	inbred	6	m	10wks	N=8

Jaxpheno7:41	Jaxpheno7	observation (SHIRPA)	(none)	characteristic movement with head facing upward on vertical wire grid (score 0-4) [score] catalepsy 34941	inbred	6	m	10wks	N=8

Jaxpheno7:42	Jaxpheno7	observation (SHIRPA)	(none)	characteristic movement with head facing downward on vertical wire grid (score 0-4) [score] neg_geo 34942	inbred	6	m	10wks	N=8

Jaxpheno7:43	Jaxpheno7	rotarod	(none)	latency to fall from stationary rotarod during habituation period [s] latency_stationary 34943 trial1 trial2 trial3 average	inbred	6	m	10wks	N=7

Jaxpheno7:47	Jaxpheno7	rotarod	(none)	latency to fall from rotarod at constant 4 rpm [s] latency_constant 34947 trial1 trial2 trial3 average	inbred	6	m	10wks	N=7

Jaxpheno7:51	Jaxpheno7	rotarod	(none)	latency to fall from accelerating rotarod, 6 rpm/min [s] latency_accel 34951 trial1 trial2 trial3 average	inbred	6	m	10wks	N=8

Jaxpheno7:55	Jaxpheno7	rotarod	(none)	peak acceleration on the rotarod prior to fall, 0.1 rpm/s [s] peak_rpm 34955 trial1 trial2 trial3 average	inbred	6	m	10wks	N=8

Jaxpheno7:59	Jaxpheno7	grip strength	(none)	grip strength, peak tension [g] grip 34959 trial1 trial2 trial3	inbred	6	m	10wks	N=8

Jaxpheno7:62	Jaxpheno7	grip strength	(none)	grip strength mean peak tension over 3 trials [g] mean_grip 34962	inbred	6	m	10wks	N=8

Jaxpheno7:63	Jaxpheno7	grip strength	(none)	grip strength maximum peak tension over 3 trials [g] max_grip 34963	inbred	6	m	10wks	N=8

Jaxpheno7: Neuromuscular and behavioral testing in males of 6 inbred strains of mice (2010)