Phenotype measure:   Lake2   pinna_reflex

ID, description, units MPD:21732   pinna_reflex   ear pinna withdrawal response to sensory stimulation on horizontal wire-grid (score 0-2)   [score]
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake2 - ear pinna withdrawal response to sensory stimulation on horizontal wire-grid (score 0-2)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means0.994   score 1.01   score
Median of the strain means1.00   score 1.00   score
SD of the strain means± 0.0722 ± 0.0892
Coefficient of variation (CV)0.0726 0.0880
Min–max range of strain means0.688   –   1.12   score 0.750   –   1.25   score
Mean sample size per strain8.3   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0946 0.0946 2.9538 0.0866
strain 22 2.6269 0.1194 3.7296 < 0.0001
sex:strain 22 0.5536 0.0252 0.7859 0.7433
Residuals 335 10.725 0.032


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.688 0.479   16 0.12 0.696 -4.24
A/J m 0.75 0.463   8 0.164 0.617 -2.96
B6.A-Chr1 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr1 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr10 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr10 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr11 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr11 m 1.2 0.422   10 0.133 0.351 1.0, 2.0 2.09
B6.A-Chr12 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr12 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr13 f 1.0 0.0   5 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr13 m 1.0 0.0   7 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr14 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr14 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr15 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr15 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr16 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr16 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr17 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr17 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr18 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr18 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr19 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr19 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr2 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr2 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr3 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr3 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr4 f 1.0 0.0   7 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr4 m 1.12 0.354   8 0.125 0.314 1.0, 2.0 1.19
B6.A-Chr5 f 1.12 0.354   8 0.125 0.314 1.0, 2.0 1.74
B6.A-Chr5 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr6 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr6 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr7 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr7 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-Chr8 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr8 m 1.25 0.463   8 0.164 0.37 1.0, 2.0 2.65
B6.A-Chr9 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-Chr9 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-ChrX f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-ChrX m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
B6.A-ChrY f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.08
B6.A-ChrY m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16
C57BL/6J f 1.06 0.25   16 0.0625 0.235 1.0, 2.0 0.91
C57BL/6J m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.6875 0.0447 0.7755 0.5995
A/J m 0.75 0.0633 0.8744 0.6256
B6.A-Chr1 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr1 m 1.0 0.0633 1.1244 0.8756
B6.A-Chr10 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr10 m 1.0 0.0633 1.1244 0.8756
B6.A-Chr11 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr11 m 1.2 0.0566 1.3113 1.0887
B6.A-Chr12 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr12 m 1.0 0.0633 1.1244 0.8756
B6.A-Chr13 f 1.0 0.08 1.1574 0.8426
B6.A-Chr13 m 1.0 0.0676 1.133 0.867
B6.A-Chr14 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr14 m 1.0 0.0633 1.1244 0.8756
B6.A-Chr15 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr15 m 1.0 0.0633 1.1244 0.8756
B6.A-Chr16 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr16 m 1.0 0.0633 1.1244 0.8756
B6.A-Chr17 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr17 m 1.0 0.0633 1.1244 0.8756
B6.A-Chr18 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr18 m 1.0 0.0633 1.1244 0.8756
B6.A-Chr19 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr19 m 1.0 0.0633 1.1244 0.8756
B6.A-Chr2 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr2 m 1.0 0.0633 1.1244 0.8756
B6.A-Chr3 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr3 m 1.0 0.0633 1.1244 0.8756
B6.A-Chr4 f 1.0 0.0676 1.133 0.867
B6.A-Chr4 m 1.125 0.0633 1.2494 1.0006
B6.A-Chr5 f 1.125 0.0633 1.2494 1.0006
B6.A-Chr5 m 1.0 0.0633 1.1244 0.8756
B6.A-Chr6 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr6 m 1.0 0.0633 1.1244 0.8756
B6.A-Chr7 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr7 m 1.0 0.0633 1.1244 0.8756
B6.A-Chr8 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr8 m 1.25 0.0633 1.3744 1.1256
B6.A-Chr9 f 1.0 0.0633 1.1244 0.8756
B6.A-Chr9 m 1.0 0.0633 1.1244 0.8756
B6.A-ChrX f 1.0 0.0633 1.1244 0.8756
B6.A-ChrX m 1.0 0.0633 1.1244 0.8756
B6.A-ChrY f 1.0 0.0633 1.1244 0.8756
B6.A-ChrY m 1.0 0.0633 1.1244 0.8756
C57BL/6J f 1.0625 0.0447 1.1505 0.9745
C57BL/6J m 1.0 0.0633 1.1244 0.8756


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.7188 0.0387 0.795 0.6425
B6.A-Chr1 both 1.0 0.0447 1.088 0.912
B6.A-Chr10 both 1.0 0.0447 1.088 0.912
B6.A-Chr11 both 1.1 0.0424 1.1835 1.0165
B6.A-Chr12 both 1.0 0.0447 1.088 0.912
B6.A-Chr13 both 1.0 0.0524 1.103 0.897
B6.A-Chr14 both 1.0 0.0447 1.088 0.912
B6.A-Chr15 both 1.0 0.0447 1.088 0.912
B6.A-Chr16 both 1.0 0.0447 1.088 0.912
B6.A-Chr17 both 1.0 0.0447 1.088 0.912
B6.A-Chr18 both 1.0 0.0447 1.088 0.912
B6.A-Chr19 both 1.0 0.0447 1.088 0.912
B6.A-Chr2 both 1.0 0.0447 1.088 0.912
B6.A-Chr3 both 1.0 0.0447 1.088 0.912
B6.A-Chr4 both 1.0625 0.0463 1.1536 0.9714
B6.A-Chr5 both 1.0625 0.0447 1.1505 0.9745
B6.A-Chr6 both 1.0 0.0447 1.088 0.912
B6.A-Chr7 both 1.0 0.0447 1.088 0.912
B6.A-Chr8 both 1.125 0.0447 1.213 1.037
B6.A-Chr9 both 1.0 0.0447 1.088 0.912
B6.A-ChrX both 1.0 0.0447 1.088 0.912
B6.A-ChrY both 1.0 0.0447 1.088 0.912
C57BL/6J both 1.0313 0.0387 1.1075 0.955




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA