Phenotype measure:   Chang2   eye_dysmorpho

ID, description, units MPD:42701   eye_dysmorpho   eyeless   [frequency rate]
Data set, strains Chang2   B6.PWD consomic w/par   28 strains     sex: both     age: 44-61wks
Procedure slit lamp
Ontology mappings

  STRAIN COMPARISON PLOT
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Chang2 - eyeless



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means0.0176   frequency rate 0.00357   frequency rate
Median of the strain means0   frequency rate 0   frequency rate
SD of the strain means± 0.0533 ± 0.0189
Coefficient of variation (CV)3.03 5.29
Min–max range of strain means0   –   0.200   frequency rate 0   –   0.100   frequency rate
Mean sample size per strain8.9   mice 8.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0301 0.0301 2.5611 0.1103
strain 27 0.6255 0.0232 1.9684 0.003
sex:strain 27 0.2446 0.0091 0.7698 0.7917
Residuals 427 5.0253 0.0118


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 0.0 0.0   8 0.0 0.0 -0.33
B6.PWD-Chr1 m 0.0 0.0   9 0.0 0.0 -0.19
B6.PWD-Chr10.1 f 0.2 0.422   10 0.133 2.11 3.42
B6.PWD-Chr10.1 m 0.1 0.316   10 0.1 3.16 5.1
B6.PWD-Chr10.2 f 0.0 0.0   10 0.0 0.0 -0.33
B6.PWD-Chr10.2 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr10.3 f 0.0 0.0   7 0.0 0.0 -0.33
B6.PWD-Chr10.3 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr11.1 f 0.0 0.0   8 0.0 0.0 -0.33
B6.PWD-Chr11.1 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr11.2 f 0.0 0.0   7 0.0 0.0 -0.33
B6.PWD-Chr11.2 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr11.3 f 0.0 0.0   7 0.0 0.0 -0.33
B6.PWD-Chr11.3 m 0.0 0.0   9 0.0 0.0 -0.19
B6.PWD-Chr12 f 0.0 0.0   9 0.0 0.0 -0.33
B6.PWD-Chr12 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr13 f 0.0 0.0   8 0.0 0.0 -0.33
B6.PWD-Chr13 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr14 f 0.0 0.0   9 0.0 0.0 -0.33
B6.PWD-Chr14 m 0.0 0.0   9 0.0 0.0 -0.19
B6.PWD-Chr15 f 0.111 0.333   9 0.111 3.0 1.75
B6.PWD-Chr15 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr16 f 0.0 0.0   11 0.0 0.0 -0.33
B6.PWD-Chr16 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr17 f 0.0 0.0   8 0.0 0.0 -0.33
B6.PWD-Chr17 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr18 f 0.0 0.0   8 0.0 0.0 -0.33
B6.PWD-Chr18 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr19 f 0.0 0.0   8 0.0 0.0 -0.33
B6.PWD-Chr19 m 0.0 0.0   9 0.0 0.0 -0.19
B6.PWD-Chr2 f 0.0 0.0   8 0.0 0.0 -0.33
B6.PWD-Chr2 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr3 f 0.0 0.0   8 0.0 0.0 -0.33
B6.PWD-Chr3 m 0.0 0.0   9 0.0 0.0 -0.19
B6.PWD-Chr5 f 0.0 0.0   10 0.0 0.0 -0.33
B6.PWD-Chr5 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-Chr6 f 0.0 0.0   9 0.0 0.0 -0.33
B6.PWD-Chr6 m 0.0 0.0   7 0.0 0.0 -0.19
B6.PWD-Chr8 f 0.0 0.0   11 0.0 0.0 -0.33
B6.PWD-Chr8 m 0.0 0.0   10 0.0 0.0 -0.19
B6.PWD-Chr9 f 0.0 0.0   11 0.0 0.0 -0.33
B6.PWD-Chr9 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-ChrX.1 f 0.0 0.0   8 0.0 0.0 -0.33
B6.PWD-ChrX.1 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-ChrX.2 f 0.182 0.405   11 0.122 2.22 3.08
B6.PWD-ChrX.2 m 0.0 0.0   10 0.0 0.0 -0.19
B6.PWD-ChrX.3 f 0.0 0.0   9 0.0 0.0 -0.33
B6.PWD-ChrX.3 m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-ChrY f 0.0 0.0   8 0.0 0.0 -0.33
B6.PWD-ChrY m 0.0 0.0   8 0.0 0.0 -0.19
B6.PWD-mt f 0.0 0.0   9 0.0 0.0 -0.33
B6.PWD-mt m 0.0 0.0   8 0.0 0.0 -0.19
C57BL/6J f 0.0 0.0   9 0.0 0.0 -0.33
C57BL/6J m 0.0 0.0   9 0.0 0.0 -0.19
PWD/PhJ f 0.0 0.0   11 0.0 0.0 -0.33
PWD/PhJ m 0.0 0.0   7 0.0 0.0 -0.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr1 m 0.0 0.0362 0.0711 -0.0711
B6.PWD-Chr10.1 f 0.2 0.0343 0.2674 0.1326
B6.PWD-Chr10.1 m 0.1 0.0343 0.1674 0.0326
B6.PWD-Chr10.2 f 0.0 0.0343 0.0674 -0.0674
B6.PWD-Chr10.2 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr10.3 f 0.0 0.041 0.0806 -0.0806
B6.PWD-Chr10.3 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr11.1 f 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr11.1 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr11.2 f 0.0 0.041 0.0806 -0.0806
B6.PWD-Chr11.2 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr11.3 f 0.0 0.041 0.0806 -0.0806
B6.PWD-Chr11.3 m 0.0 0.0362 0.0711 -0.0711
B6.PWD-Chr12 f 0.0 0.0362 0.0711 -0.0711
B6.PWD-Chr12 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr13 f 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr13 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr14 f 0.0 0.0362 0.0711 -0.0711
B6.PWD-Chr14 m 0.0 0.0362 0.0711 -0.0711
B6.PWD-Chr15 f 0.1111 0.0362 0.1822 0.04
B6.PWD-Chr15 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr16 f 0.0 0.0327 0.0643 -0.0643
B6.PWD-Chr16 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr17 f 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr17 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr18 f 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr18 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr19 f 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr19 m 0.0 0.0362 0.0711 -0.0711
B6.PWD-Chr2 f 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr2 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr3 f 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr3 m 0.0 0.0362 0.0711 -0.0711
B6.PWD-Chr5 f 0.0 0.0343 0.0674 -0.0674
B6.PWD-Chr5 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-Chr6 f 0.0 0.0362 0.0711 -0.0711
B6.PWD-Chr6 m 0.0 0.041 0.0806 -0.0806
B6.PWD-Chr8 f 0.0 0.0327 0.0643 -0.0643
B6.PWD-Chr8 m 0.0 0.0343 0.0674 -0.0674
B6.PWD-Chr9 f 0.0 0.0327 0.0643 -0.0643
B6.PWD-Chr9 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-ChrX.1 f 0.0 0.0384 0.0754 -0.0754
B6.PWD-ChrX.1 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-ChrX.2 f 0.1818 0.0327 0.2461 0.1175
B6.PWD-ChrX.2 m 0.0 0.0343 0.0674 -0.0674
B6.PWD-ChrX.3 f 0.0 0.0362 0.0711 -0.0711
B6.PWD-ChrX.3 m 0.0 0.0384 0.0754 -0.0754
B6.PWD-ChrY f 0.0 0.0384 0.0754 -0.0754
B6.PWD-ChrY m 0.0 0.0384 0.0754 -0.0754
B6.PWD-mt f 0.0 0.0362 0.0711 -0.0711
B6.PWD-mt m 0.0 0.0384 0.0754 -0.0754
C57BL/6J f 0.0 0.0362 0.0711 -0.0711
C57BL/6J m 0.0 0.0362 0.0711 -0.0711
PWD/PhJ f 0.0 0.0327 0.0643 -0.0643
PWD/PhJ m 0.0 0.041 0.0806 -0.0806


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 both 0.0 0.0264 0.0518 -0.0518
B6.PWD-Chr10.1 both 0.15 0.0243 0.1977 0.1023
B6.PWD-Chr10.2 both 0.0 0.0257 0.0506 -0.0506
B6.PWD-Chr10.3 both 0.0 0.0281 0.0552 -0.0552
B6.PWD-Chr11.1 both 0.0 0.0271 0.0533 -0.0533
B6.PWD-Chr11.2 both 0.0 0.0281 0.0552 -0.0552
B6.PWD-Chr11.3 both 0.0 0.0273 0.0537 -0.0537
B6.PWD-Chr12 both 0.0 0.0264 0.0518 -0.0518
B6.PWD-Chr13 both 0.0 0.0271 0.0533 -0.0533
B6.PWD-Chr14 both 0.0 0.0256 0.0503 -0.0503
B6.PWD-Chr15 both 0.0556 0.0264 0.1074 0.0038
B6.PWD-Chr16 both 0.0 0.0252 0.0495 -0.0495
B6.PWD-Chr17 both 0.0 0.0271 0.0533 -0.0533
B6.PWD-Chr18 both 0.0 0.0271 0.0533 -0.0533
B6.PWD-Chr19 both 0.0 0.0264 0.0518 -0.0518
B6.PWD-Chr2 both 0.0 0.0271 0.0533 -0.0533
B6.PWD-Chr3 both 0.0 0.0264 0.0518 -0.0518
B6.PWD-Chr5 both 0.0 0.0257 0.0506 -0.0506
B6.PWD-Chr6 both 0.0 0.0273 0.0537 -0.0537
B6.PWD-Chr8 both 0.0 0.0237 0.0466 -0.0466
B6.PWD-Chr9 both 0.0 0.0252 0.0495 -0.0495
B6.PWD-ChrX.1 both 0.0 0.0271 0.0533 -0.0533
B6.PWD-ChrX.2 both 0.0909 0.0237 0.1375 0.0443
B6.PWD-ChrX.3 both 0.0 0.0264 0.0518 -0.0518
B6.PWD-ChrY both 0.0 0.0271 0.0533 -0.0533
B6.PWD-mt both 0.0 0.0264 0.0518 -0.0518
C57BL/6J both 0.0 0.0256 0.0503 -0.0503
PWD/PhJ both 0.0 0.0262 0.0515 -0.0515




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA