Project measure / variable:   Jaxpheno7   pinna_reflex

ID, description, units MPD:34935   pinna_reflex   ear pinna withdrawal response to sensory stimulation on horizontal wire-grid (score 0-2)   [score]  
Data set, strains Jaxpheno7   inbred   6 strains     sex: m     age: 10wks
Procedure observation (SHIRPA)
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  STRAIN COMPARISON PLOT
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Jaxpheno7 - ear pinna withdrawal response to sensory stimulation on horizontal wire-grid (score 0-2)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested6 strains
Mean of the strain means0.985   score
Median of the strain means1.00   score
SD of the strain means± 0.0372
Coefficient of variation (CV)0.0377
Min–max range of strain means0.909   –   1.00   score
Mean sample size per strain8.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 5 0.0713 0.0143 0.7059 0.622
Residuals 45 0.9091 0.0202


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J m 1.0 0.0   6 0.0 0.0 1.0, 1.0 0.41
AKR/J m 0.909 0.302   11 0.0909 0.332 -2.04
BALB/cJ m 1.0 0.0   11 0.0 0.0 1.0, 1.0 0.41
C3H/HeJ m 1.0 0.0   6 0.0 0.0 1.0, 1.0 0.41
C57BL/6J m 1.0 0.0   6 0.0 0.0 1.0, 1.0 0.41
DBA/2J m 1.0 0.0   11 0.0 0.0 1.0, 1.0 0.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1.0 0.058 1.1169 0.8831
AKR/J m 0.9091 0.0429 0.9954 0.8228
BALB/cJ m 1.0 0.0429 1.0863 0.9137
C3H/HeJ m 1.0 0.058 1.1169 0.8831
C57BL/6J m 1.0 0.058 1.1169 0.8831
DBA/2J m 1.0 0.0429 1.0863 0.9137




  GWAS USING LINEAR MIXED MODELS