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Phenotype measures associated with
MA:0000326 'reproductive system'
This list also includes
ontology descendants of MA:0000326
. Or, you can show
MA:0000326 only
.
MA:0000326 reproductive system
MA:0000397 epididymis
MA:0000410 seminal vesicle
MA:0000411 testis
MA:0000412 seminiferous tubule
MA:0000413 vas deferens
MA:0002420 gonad
MA:0002765 male germ cell
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Ankra-Badu1
(2)
Bouma1
(2)
Brockmann1
(2)
Chesler2
(3)
Chesler3
(4)
Donahue10
(6)
Donahue11
(6)
Donahue12
(6)
Donahue13
(6)
Donahue14
(6)
Donahue15
(6)
Donahue17
(6)
Donahue18
(4)
Donahue19
(4)
Dzur-Gejdosova1
(2)
Hadsell1
(1)
Handel1
(3)
Jax3
(8)
Jax5
(14)
Klaassen1
(1)
Odet1
(19)
Taft1
(15)
Yuan4
(1)
Procedure / Protocol
Clear All
assisted reproduction
(15)
body weight
(2)
colony observation
(79)
histopathology
(13)
metabolic panel
(1)
microscopy
(3)
monitoring system
(2)
organ weights
(8)
sperm count
(4)
Drug or Challenge
Clear All
(none)
(126)
cadmium
(1)
Panel
Clear All
AXB BXA
(6)
B6.A consomic
(6)
B6.A consomic w/par
(4)
B6.PWD consomic
(6)
BXD
(12)
BXH
(6)
CC diallel w/par
(3)
CC pre w/par
(4)
CXB
(6)
inbred
(47)
inbred w/CC8
(19)
QTL population
(8)
Sex
Clear All
both
(11)
f
(89)
m
(27)
Data set
MPD ID
Procedure / Protocol
Drug or Challenge
Phenotype Measure
Panel
No. of Strains
Sex
Age
Sample Size (Avg)
Year
Ankra-Badu1
21201
colony observation
(none)
fraternal litter size at day 12 after birth [n]
DAY12
QTL population
both
2wks
N=502
2009
Ankra-Badu1
21212
organ weights
(none)
right testis weight [mg]
TESTIS
QTL population
both
10wks
N=502
2009
Bouma1
15901
microscopy
(none)
fetal gonads [designation]
gonads
QTL population
m
N=148
2005
Bouma1
15902
microscopy
(none)
scoring of fetal gonadal status [score]
score
QTL population
m
embryo
N=148
2005
Brockmann1
21301
colony observation
(none)
number of offspring per litter: 3 classes [n]
pupsize
QTL population
both
6wks
N=138
2009
Brockmann1
21501
colony observation
(none)
number of offspring per litter: 5 classes [n]
pupsize
QTL population
both
6wks
N=201
2009
Chesler2
43441
colony observation
(none)
number of mice born in first litter [n]
litter_size
CC diallel w/par
62
both
4wks
N=8
2011
Chesler2
43442
colony observation
(none)
parental age at first litter [d]
age_first_litter
CC diallel w/par
62
both
4wks
N=8
2011
Chesler2
43443
colony observation
(none)
time from mate to first litter [d]
duration_to_litter
CC diallel w/par
62
both
4wks
N=8
2011
Chesler3
43540
organ weights
(none)
testicular weight [g]
testes_wt
CC pre w/par
54
both
4wks
N=1
2011
Chesler3
43541
colony observation
(none)
number of mice born in first litter [n]
litter_size
CC pre w/par
299
both
4wks
N=2
2011
Chesler3
43542
colony observation
(none)
parental age at first litter [d]
age_first_litter
CC pre w/par
299
both
4wks
N=2
2011
Chesler3
43543
colony observation
(none)
time from mate to first litter [d]
duration_to_litter
CC pre w/par
299
both
4wks
N=2
2011
Donahue10
41902
colony observation
(none)
mean litter interval [wks]
litter_interval
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue10
41904
colony observation
(none)
mean number of pups born [n]
litter_size_birth
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue10
41905
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue10
41906
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue10
41907
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue10
41908
colony observation
(none)
percent females at weaning [%]
pct_Fwean
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue11
42002
colony observation
(none)
mean litter interval [wks]
litter_interval
B6.PWD consomic
26
f
4-55wks
N=7
2011
Donahue11
42003
colony observation
(none)
mean number of pups born [n]
litter_size_birth
B6.PWD consomic
26
f
4-55wks
N=11
2011
Donahue11
42004
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
B6.PWD consomic
26
f
4-55wks
N=11
2011
Donahue11
42005
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
B6.PWD consomic
26
f
4-55wks
N=11
2011
Donahue11
42006
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
B6.PWD consomic
26
f
4-55wks
N=7
2011
Donahue11
42007
colony observation
(none)
percent females at weaning [%]
pct_Fwean
B6.PWD consomic
26
f
4-55wks
N=11
2011
Donahue12
42102
colony observation
(none)
mean litter interval [wks]
litter_interval
AXB BXA
28
f
3-50wks
N=8
2011
Donahue12
42103
colony observation
(none)
mean number of pups born [n]
litter_size_birth
AXB BXA
28
f
3-50wks
N=8
2011
Donahue12
42104
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
AXB BXA
28
f
3-50wks
N=8
2011
Donahue12
42105
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
AXB BXA
28
f
3-50wks
N=8
2011
Donahue12
42106
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
AXB BXA
28
f
3-50wks
N=8
2011
Donahue12
42107
colony observation
(none)
percent females at weaning [%]
pct_Fwean
AXB BXA
28
f
3-50wks
N=8
2011
Donahue13
42202
colony observation
(none)
mean litter interval [wks]
litter_interval
CXB
13
f
3-50wks
N=8
2011
Donahue13
42203
colony observation
(none)
mean number of pups born [n]
litter_size_birth
CXB
13
f
3-50wks
N=8
2011
Donahue13
42204
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
CXB
13
f
3-50wks
N=8
2011
Donahue13
42205
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
CXB
13
f
3-50wks
N=8
2011
Donahue13
42206
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
CXB
13
f
3-50wks
N=8
2011
Donahue13
42207
colony observation
(none)
percent females at weaning [%]
pct_Fwean
CXB
13
f
3-50wks
N=8
2011
Donahue14
42302
colony observation
(none)
mean litter interval [wks]
litter_interval
BXD
40
f
3-60wks
N=4
2011
Donahue14
42303
colony observation
(none)
mean number of pups born [n]
litter_size_birth
BXD
42
f
3-60wks
N=6
2011
Donahue14
42304
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
BXD
42
f
3-60wks
N=6
2011
Donahue14
42305
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
BXD
42
f
3-60wks
N=6
2011
Donahue14
42306
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
BXD
40
f
3-60wks
N=4
2011
Donahue14
42307
colony observation
(none)
percent females at weaning [%]
pct_Fwean
BXD
42
f
3-60wks
N=6
2011
Donahue15
42402
colony observation
(none)
mean litter interval [wks]
litter_interval
BXH
11
f
3-55wks
N=8
2011
Donahue15
42403
colony observation
(none)
mean number of pups born [n]
litter_size_birth
BXH
11
f
3-55wks
N=8
2011
Donahue15
42404
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
BXH
11
f
3-55wks
N=8
2011
Donahue15
42405
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
BXH
11
f
3-55wks
N=8
2011
Donahue15
42406
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
BXH
11
f
3-55wks
N=8
2011
Donahue15
42407
colony observation
(none)
percent females at weaning [%]
pct_Fwean
BXH
11
f
3-55wks
N=8
2011
Donahue17
44301
colony observation
(none)
mean litter interval [wks]
litter_interval
BXD
30
f
3-57wks
N=8
2011
Donahue17
44302
colony observation
(none)
mean number of pups born [n]
litter_size_birth
BXD
30
f
3-57wks
N=8
2011
Donahue17
44303
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
BXD
30
f
3-57wks
N=8
2011
Donahue17
44304
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
BXD
30
f
3-57wks
N=8
2011
Donahue17
44305
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
BXD
30
f
3-57wks
N=8
2011
Donahue17
44306
colony observation
(none)
percent females at weaning [%]
pct_Fwean
BXD
30
f
3-57wks
N=8
2011
Donahue18
44401
body weight
(none)
percent increase in maternal body weight during pregnancy to E14.5 days [%]
pregnancy_load
inbred
15
f
6-8wks
N=15
2010
Donahue18
44402
monitoring system
(none)
gestation duration [h]
gestation
inbred
15
f
6-8wks
N=17
2010
Donahue18
44403
colony observation
(none)
number of pups born per litter [n]
total_born
inbred
15
f
6-8wks
N=17
2010
Donahue18
44404
colony observation
(none)
percent of pups that survived to day 3 [%]
pup_survival
inbred
15
f
6-8wks
N=17
2010
Donahue19
44501
body weight
(none)
percent increase in maternal body weight during pregnancy to E14.5 days [%]
pregnancy_load
B6.A consomic w/par
22
f
6-8wks
N=15
2010
Donahue19
44502
monitoring system
(none)
gestation duration [h]
gestation
B6.A consomic w/par
22
f
6-8wks
N=15
2010
Donahue19
44503
colony observation
(none)
number of pups born per litter [n]
total_born
B6.A consomic w/par
22
f
6-8wks
N=15
2010
Donahue19
44504
colony observation
(none)
percent of pups that survived to day 3 [%]
pup_survival
B6.A consomic w/par
22
f
6-8wks
N=15
2010
Dzur-Gejdosova1
27202
organ weights
(none)
testes weight [mg]
TW
QTL population
m
9wks
N=254
2012
Dzur-Gejdosova1
27203
microscopy
(none)
sperm cells counted in Bürker chamber [millions]
SC
QTL population
m
9wks
N=254
2012
Hadsell1
49401
colony observation
(none)
number of pups born in second litter (biological) [n]
pups_born
inbred
31
f
14-18wks
N=10
2012
Handel1
12041
organ weights
(none)
seminal vesicle weight (both left and right) [g]
seminal_vesicle
inbred
14
m
8-10wks
N=5
2010
Handel1
12045
organ weights
(none)
testicular weight (both left and right) [g]
testes
inbred
14
m
8-10wks
N=5
2010
Handel1
12049
sperm count
(none)
sperm count (n x 10
^{6}
per mouse) [n]
sperm_count
inbred
14
m
8-10wks
N=5
2010
Jax3
14932
colony observation
(none)
age of dam at birth of first litter [d]
age_dam_lit1
inbred
33
f
1991
Jax3
14933
colony observation
(none)
number of litters per dam [n]
littersborn
inbred
33
f
4-30wks
1991
Jax3
14934
colony observation
(none)
percent matings that were nonproductive [%]
pct_nonprod
inbred
33
f
4-30wks
1991
Jax3
14938
colony observation
(none)
number of mice per litter [n]
mice_per_litter
inbred
33
f
4-30wks
1991
Jax3
14941
colony observation
(none)
number of mice born per dam [n]
miceborn
inbred
33
f
4-30wks
1991
Jax3
14942
colony observation
(none)
number of mice weaned per dam [n]
miceweaned
inbred
33
f
4-30wks
1991
Jax3
14943
colony observation
(none)
percent pups weaned (of total born) [%]
pct_wean
inbred
33
f
4-30wks
1991
Jax3
14948
colony observation
(none)
percent males at weaning [%]
pct_male_wean
inbred
33
f
4-30wks
1991
Jax5
31401
colony observation
(none)
total number of litters per dam [n]
total_litters
inbred
35
f
6-40wks
N=46
2009
Jax5
31402
colony observation
(none)
latency to first litter per dam (dam age at first litter minus age at mate) [wks]
latency_first_litter
inbred
35
f
6-40wks
N=46
2009
Jax5
31403
colony observation
(none)
mean interval between consecutive litters per dam [d]
mean_interval
inbred
35
f
6-40wks
N=44
2009
Jax5
31404
colony observation
(none)
number of pups born per litter [n]
born
inbred
35
f
6-40wks
N=184
2009
Jax5
31405
colony observation
(none)
number of pups weaned per litter [n]
wean
inbred
35
f
6-40wks
N=184
2009
Jax5
31406
colony observation
(none)
wean to born ratio per litter [ratio]
wean_born_ratio
inbred
35
f
6-40wks
N=184
2009
Jax5
31407
colony observation
(none)
total number of pups born per dam [n]
born_total
inbred
35
f
6-40wks
N=46
2009
Jax5
31408
colony observation
(none)
mean number of pups born based on mean number of litters per dam [n]
born_mean
inbred
35
f
6-40wks
N=46
2009
Jax5
31409
colony observation
(none)
total number of pups weaned per dam [n]
wean_total
inbred
35
f
6-40wks
N=46
2009
Jax5
31410
colony observation
(none)
mean number of pups weaned based on mean number of litters per dam [n]
wean_mean
inbred
35
f
6-40wks
N=46
2009
Jax5
31411
colony observation
(none)
wean to born ratio per dam, adjusted for biological parameters [ratio]
parenting_index
inbred
35
f
6-40wks
N=38
2009
Jax5
31412
colony observation
(none)
total pups weaned per dam over mean interval between litters, adjusted for biological parameters [n/d]
fecundity_index
inbred
35
f
6-40wks
N=44
2009
Jax5
31413
colony observation
(none)
percent females weaned per dam [%]
pct_female_dam
inbred
35
f
6-40wks
N=46
2009
Jax5
31414
colony observation
(none)
female to male ratio per dam, adjusted for biological parameters [ratio]
sex_ratio
inbred
35
f
6-40wks
N=38
2009
Klaassen1
16401
histopathology
cadmium
Cd-induced toxicity to testis [designation]
testis
inbred
m
8wks
2001
Odet1
53711
organ weights
(none)
mean epididymis plus vas deferens weight [g]
epidid_vasdef_wt
inbred w/CC8
8
m
10-66wks
N=21
2015
Odet1
53712
organ weights
(none)
seminal vesicles weight [g]
seminal_ves_wt
inbred w/CC8
8
m
10-66wks
N=27
2015
Odet1
53713
organ weights
(none)
mean testis weight [g]
testis_wt
inbred w/CC8
8
m
10-66wks
N=27
2015
Odet1
53721
histopathology
(none)
mean seminiferous tubule radius (transverse section) [µm]
seminif_radius
inbred w/CC8
8
m
10-66wks
N=26
2015
Odet1
53722
histopathology
(none)
seminiferious epithelium length (transverse section) [cm]
seminif_length
inbred w/CC8
8
m
10-66wks
N=26
2015
Odet1
53723
histopathology
(none)
number of seminiferous tubules (transverse section) [n]
seminif_count
inbred w/CC8
8
m
10-66wks
N=26
2015
Odet1
53724
histopathology
(none)
number of seminiferous tubules with vacuoles (transverse section) [n]
seminif_vacuoles
inbred w/CC8
8
m
10-66wks
N=26
2015
Odet1
53725
histopathology
(none)
number of seminiferous tubules with many vacuoles (transverse section) [n]
seminif_many_vacuoles
inbred w/CC8
8
m
10-66wks
N=26
2015
Odet1
53726
histopathology
(none)
number of seminiferous tubules with germ cell loss (transverse section) [n]
seminif_germ_loss
inbred w/CC8
8
m
10-66wks
N=18
2015
Odet1
53727
histopathology
(none)
number of seminiferous tubules with abnormal germ cells (transverse section) [n]
seminif_germ_abnormal
inbred w/CC8
8
m
10-66wks
N=26
2015
Odet1
53728
histopathology
(none)
number of seminiferous tubules with germ cell sloughing (transverse section) [n]
seminif_germ_slough
inbred w/CC8
8
m
10-66wks
N=26
2015
Odet1
53731
sperm count
(none)
sperm count per mouse (x 10
^{6}
) [n]
sperm_per_mouse
inbred w/CC8
8
m
10-66wks
N=21
2015
Odet1
53732
sperm count
(none)
sperm count per mg testis weight (x 10
^{3}
) [n]
sperm_per_testis
inbred w/CC8
8
m
10-66wks
N=20
2015
Odet1
53733
sperm count
(none)
sperm count per seminiferous epithelium length (x 10
^{3}
) [n]
sperm_per_seminif
inbred w/CC8
8
m
10-66wks
N=19
2015
Odet1
53741
histopathology
(none)
percentage of sperm with normal morphology [%]
sperm_normal
inbred w/CC8
8
m
10-66wks
N=14
2015
Odet1
53742
histopathology
(none)
percentage of sperm with abnormal head shape [%]
sperm_abnormal_head
inbred w/CC8
8
m
10-66wks
N=14
2015
Odet1
53743
histopathology
(none)
percentage of sperm with abnormal tail bending [%]
sperm_abnormal_tail
inbred w/CC8
8
m
10-66wks
N=14
2015
Odet1
53744
histopathology
(none)
percentage of sperm with broken tails [%]
sperm_broken_tail
inbred w/CC8
8
m
10-66wks
N=14
2015
Odet1
53751
metabolic panel
(none)
lactate production per 10
^{8}
sperm [µmole]
sperm_lactate
inbred w/CC8
8
m
10-66wks
N=8
2015
Taft1
19301
assisted reproduction
(none)
percent females responding to superovulation [%]
super_pct
inbred
10
f
N=17
2006
Taft1
19303
assisted reproduction
(none)
total oocyte per donor [n]
oocyte_donor
inbred
10
f
N=17
2006
Taft1
19305
assisted reproduction
(none)
percent of live oocyte per donor [%]
pct_live_super
inbred
10
f
N=17
2006
Taft1
19306
assisted reproduction
(none)
percent of dead ooctye per donor [%]
pct_dead_super
inbred
10
f
N=17
2006
Taft1
19307
assisted reproduction
(none)
percent of fragmented oocyte per donor [%]
pct_frag_super
inbred
10
f
N=17
2006
Taft1
19311
assisted reproduction
(none)
two-cell embryos, percent of IVF dish cells [%]
pct_two_cell_IVF
inbred
10
f
N=17
2006
Taft1
19312
assisted reproduction
(none)
one-cell embryos, percent of IVF dish cells [%]
pct_one_cell_IVF
inbred
10
f
N=17
2006
Taft1
19313
assisted reproduction
(none)
dead embryos, percent of IVF dish cells [%]
pct_dead_IVF
inbred
10
f
N=17
2006
Taft1
19314
assisted reproduction
(none)
fragmented oocytes, percent of IVF dish cells [%]
pct_frag_IVF
inbred
10
f
N=17
2006
Taft1
19321
assisted reproduction
(none)
live pups, percent of fresh ET [%]
pct_live_fresh
inbred
10
f
N=14
2006
Taft1
19322
assisted reproduction
(none)
resorbed fetuses, percent of fresh ET [%]
pct_dead_fresh
inbred
10
f
N=14
2006
Taft1
19323
assisted reproduction
(none)
implant sites (early resorption), percent of fresh ET [%]
pct_implant_fresh
inbred
10
f
N=14
2006
Taft1
19331
assisted reproduction
(none)
live pups, percent of frozen/thawed ET [%]
pct_live_frozen
inbred
9
f
N=12
2006
Taft1
19332
assisted reproduction
(none)
resorbed fetus, percent of frozen/thawed ET [%]
pct_dead_frozen
inbred
9
f
N=12
2006
Taft1
19333
assisted reproduction
(none)
implant sites (early resorption), percent of frozen/thawed ET [%]
pct_implant_frozen
inbred
9
f
N=12
2006
Yuan4
25402
colony observation
(none)
age at vaginal opening (patency) [d]
age_VO
inbred
33
f
2-7wks
N=38
2009
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