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Examples
Phenotype measures associated with
ontology
term
VT:0001923 'female fertility trait'
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Data set
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Brockmann1
(2)
Chesler2
(2)
Chesler3
(2)
Donahue10
(5)
Donahue11
(5)
Donahue12
(5)
Donahue13
(5)
Donahue14
(5)
Donahue15
(3)
Donahue17
(5)
Donahue18
(4)
Donahue19
(4)
Hadsell1
(1)
Jax3
(7)
Jax5
(12)
Parker1
(3)
Shorter3
(3)
Taft1
(5)
Procedure / Protocol
Clear All
assisted reproduc...
(8)
body weight
(2)
colony observation
(66)
monitoring system
(2)
Treatment
Clear All
(none)
(78)
Panel
Clear All
AXB BXA
(5)
B6.A consomic
(5)
B6.A consomic w/par
(4)
B6.PWD consomic
(5)
BXD
(10)
BXH
(3)
CC diallel w/par
(5)
CC pre w/par
(2)
CXB
(5)
inbred
(32)
QTL population
(2)
Sex
Clear All
both
(6)
f
(72)
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Data set
Procedure / Protocol
Treatment
Phenotype Measure / Variable (click to view)
Panel
No. of Strains
Sex
Age
Sample Size (Avg)
Year
Brockmann1:1
Brockmann1
colony observation
(none)
number of offspring per litter: 3 classes [n]
pupsize
21301
QTL population
both
6wks
N=138
2009
Brockmann1:21
Brockmann1
colony observation
(none)
number of offspring per litter: 5 classes [n]
pupsize_b
21501
QTL population
both
6wks
N=201
2009
Chesler2:28
Chesler2
colony observation
(none)
number of mice born in first litter [n]
litter_size
43441
CC diallel w/par
62
both
4wks
N=8
2011
Chesler2:30
Chesler2
colony observation
(none)
time from mate to first litter [d]
duration_to_litter
43443
CC diallel w/par
62
both
4wks
N=8
2011
Chesler3:41
Chesler3
colony observation
(none)
number of mice born in first litter [n]
litter_size
43541
CC pre w/par
312
both
4wks
N=2
2011
Chesler3:43
Chesler3
colony observation
(none)
time from mate to first litter [d]
duration_to_litter
43543
CC pre w/par
312
both
4wks
N=2
2011
Donahue10:2
Donahue10
colony observation
(none)
mean litter interval [wks]
litter_interval
41902
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue10:4
Donahue10
colony observation
(none)
mean number of pups born [n]
litter_size_birth
41904
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue10:5
Donahue10
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
41905
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue10:6
Donahue10
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
41906
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue10:7
Donahue10
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
41907
B6.A consomic
20
f
3-53wks
N=8
2011
Donahue11:2
Donahue11
colony observation
(none)
mean litter interval [wks]
litter_interval
42002
B6.PWD consomic
26
f
4-55wks
N=7
2011
Donahue11:3
Donahue11
colony observation
(none)
mean number of pups born [n]
litter_size_birth
42003
B6.PWD consomic
26
f
4-55wks
N=11
2011
Donahue11:4
Donahue11
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
42004
B6.PWD consomic
26
f
4-55wks
N=11
2011
Donahue11:5
Donahue11
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
42005
B6.PWD consomic
26
f
4-55wks
N=11
2011
Donahue11:6
Donahue11
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
42006
B6.PWD consomic
26
f
4-55wks
N=7
2011
Donahue12:2
Donahue12
colony observation
(none)
mean litter interval [wks]
litter_interval
42102
AXB BXA
28
f
3-50wks
N=8
2011
Donahue12:3
Donahue12
colony observation
(none)
mean number of pups born [n]
litter_size_birth
42103
AXB BXA
28
f
3-50wks
N=8
2011
Donahue12:4
Donahue12
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
42104
AXB BXA
28
f
3-50wks
N=8
2011
Donahue12:5
Donahue12
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
42105
AXB BXA
28
f
3-50wks
N=8
2011
Donahue12:6
Donahue12
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
42106
AXB BXA
28
f
3-50wks
N=8
2011
Donahue13:2
Donahue13
colony observation
(none)
mean litter interval [wks]
litter_interval
42202
CXB
13
f
3-50wks
N=8
2011
Donahue13:3
Donahue13
colony observation
(none)
mean number of pups born [n]
litter_size_birth
42203
CXB
13
f
3-50wks
N=8
2011
Donahue13:4
Donahue13
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
42204
CXB
13
f
3-50wks
N=8
2011
Donahue13:5
Donahue13
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
42205
CXB
13
f
3-50wks
N=8
2011
Donahue13:6
Donahue13
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
42206
CXB
13
f
3-50wks
N=8
2011
Donahue14:2
Donahue14
colony observation
(none)
mean litter interval [wks]
litter_interval
42302
BXD
40
f
3-60wks
N=4
2011
Donahue14:3
Donahue14
colony observation
(none)
mean number of pups born [n]
litter_size_birth
42303
BXD
42
f
3-60wks
N=6
2011
Donahue14:4
Donahue14
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
42304
BXD
42
f
3-60wks
N=6
2011
Donahue14:5
Donahue14
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
42305
BXD
42
f
3-60wks
N=6
2011
Donahue14:6
Donahue14
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
42306
BXD
40
f
3-60wks
N=4
2011
Donahue15:2
Donahue15
colony observation
(none)
mean litter interval [wks]
litter_interval
42402
BXH
11
f
3-55wks
N=8
2011
Donahue15:5
Donahue15
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
42405
BXH
11
f
3-55wks
N=8
2011
Donahue15:6
Donahue15
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
42406
BXH
11
f
3-55wks
N=8
2011
Donahue17:1
Donahue17
colony observation
(none)
mean litter interval [wks]
litter_interval
44301
BXD
30
f
3-57wks
N=8
2011
Donahue17:2
Donahue17
colony observation
(none)
mean number of pups born [n]
litter_size_birth
44302
BXD
30
f
3-57wks
N=8
2011
Donahue17:3
Donahue17
colony observation
(none)
mean number of pups weaned [n]
litter_size_wean
44303
BXD
30
f
3-57wks
N=8
2011
Donahue17:4
Donahue17
colony observation
(none)
ratio of pups weaned to pups born [ratio]
ratio_wean_born
44304
BXD
30
f
3-57wks
N=8
2011
Donahue17:5
Donahue17
colony observation
(none)
mean litter size divided by mean litter interval [n/wks]
fecundity_index
44305
BXD
30
f
3-57wks
N=8
2011
Donahue18:1
Donahue18
body weight
(none)
percent increase in maternal body weight during pregnancy to E14.5 days [%]
pregnancy_load
44401
inbred
15
f
6-8wks
N=15
2010
Donahue18:2
Donahue18
monitoring system
(none)
gestation duration [h]
gestation
44402
inbred
15
f
6-8wks
N=17
2010
Donahue18:3
Donahue18
colony observation
(none)
number of pups born per litter [n]
total_born
44403
inbred
15
f
6-8wks
N=17
2010
Donahue18:4
Donahue18
colony observation
(none)
percentage of pups that survived to day 3 [%]
pup_survival
44404
inbred
15
f
6-8wks
N=17
2010
Donahue19:1
Donahue19
body weight
(none)
percent increase in maternal body weight during pregnancy to E14.5 days [%]
pregnancy_load
44501
B6.A consomic w/par
22
f
6-8wks
N=15
2010
Donahue19:2
Donahue19
monitoring system
(none)
gestation duration [h]
gestation
44502
B6.A consomic w/par
22
f
6-8wks
N=15
2010
Donahue19:3
Donahue19
colony observation
(none)
number of pups born per litter [n]
total_born
44503
B6.A consomic w/par
22
f
6-8wks
N=15
2010
Donahue19:4
Donahue19
colony observation
(none)
percentage of pups that survived to day 3 [%]
pup_survival
44504
B6.A consomic w/par
22
f
6-8wks
N=15
2010
Hadsell1:1
Hadsell1
colony observation
(none)
number of pups born in second litter (biological) [n]
pups_born
49401
inbred
31
f
14-18wks
N=10
2012
Jax3:32
Jax3
colony observation
(none)
age of dam at birth of first litter [d]
age_dam_lit1
14932
inbred
33
f
1991
Jax3:33
Jax3
colony observation
(none)
number of litters per dam [n]
littersborn
14933
inbred
33
f
4-30wks
1991
Jax3:34
Jax3
colony observation
(none)
percent matings that were nonproductive [%]
pct_nonprod
14934
inbred
33
f
4-30wks
1991
Jax3:38
Jax3
colony observation
(none)
number of mice per litter [n]
mice_per_litter
14938
inbred
33
f
4-30wks
1991
Jax3:41
Jax3
colony observation
(none)
number of mice born per dam [n]
miceborn
14941
inbred
33
f
4-30wks
1991
Jax3:42
Jax3
colony observation
(none)
number of mice weaned per dam [n]
miceweaned
14942
inbred
33
f
4-30wks
1991
Jax3:43
Jax3
colony observation
(none)
percent pups weaned (of total born) [%]
pct_wean
14943
inbred
33
f
4-30wks
1991
Jax5:1
Jax5
colony observation
(none)
total number of litters per dam [n]
total_litters
31401
inbred
35
f
6-40wks
N=46
2009
Jax5:2
Jax5
colony observation
(none)
latency to first litter per dam, dam age at first litter minus age at mating [wks]
latency_first_litter
31402
inbred
35
f
6-40wks
N=46
2009
Jax5:3
Jax5
colony observation
(none)
mean interval between consecutive litters per dam [d]
mean_interval
31403
inbred
35
f
6-40wks
N=44
2009
Jax5:4
Jax5
colony observation
(none)
number of pups born per litter [n]
born
31404
inbred
35
f
6-40wks
N=184
2009
Jax5:5
Jax5
colony observation
(none)
number of pups weaned per litter [n]
wean
31405
inbred
35
f
6-40wks
N=184
2009
Jax5:6
Jax5
colony observation
(none)
wean to born ratio per litter [ratio]
wean_born_ratio
31406
inbred
35
f
6-40wks
N=184
2009
Jax5:7
Jax5
colony observation
(none)
total number of pups born per dam [n]
born_total
31407
inbred
35
f
6-40wks
N=46
2009
Jax5:8
Jax5
colony observation
(none)
mean number of pups born based on mean number of litters per dam [n]
born_mean
31408
inbred
35
f
6-40wks
N=46
2009
Jax5:9
Jax5
colony observation
(none)
total number of pups weaned per dam [n]
wean_total
31409
inbred
35
f
6-40wks
N=46
2009
Jax5:10
Jax5
colony observation
(none)
mean number of pups weaned based on mean number of litters per dam [n]
wean_mean
31410
inbred
35
f
6-40wks
N=46
2009
Jax5:11
Jax5
colony observation
(none)
wean to born ratio per dam, adjusted for biological parameters [ratio]
parenting_index
31411
inbred
35
f
6-40wks
N=38
2009
Jax5:12
Jax5
colony observation
(none)
total pups weaned per dam over mean interval between litters, adjusted for biological parameters [n/d]
fecundity_index
31412
inbred
35
f
6-40wks
N=44
2009
Parker1:1
Parker1
assisted reproduction
(none)
mean number of oocytes per female following treatment [n]
oocyte_num
62901
2.5 IU eCG 5 IU eCG 5 + 5 IU eCG
inbred
6
f
3-6wks
N=18
2011
Parker1:4
Parker1
assisted reproduction
(none)
mean number of fertilized oocytes per female following treatment [n]
oocyte_fert_num
62904
2.5 IU eCG 5 IU eCG 5 + 5 IU eCG
inbred
6
f
3-6wks
N=18
2011
Parker1:7
Parker1
assisted reproduction
(none)
percentage of oocytes that are fertilized per female following treatment [%]
oocyte_fert_pct
62907
2.5 IU eCG 5 IU eCG 5 + 5 IU eCG
inbred
6
f
3-6wks
N=18
2011
Shorter3:1
Shorter3
colony observation
(none)
number of weaned females [n]
weaned_f
62301
CC diallel w/par
62
f
3wks
N=72
2018
Shorter3:2
Shorter3
colony observation
(none)
number of weaned males [n]
weaned_m
62302
CC diallel w/par
62
f
3wks
N=72
2018
Shorter3:3
Shorter3
colony observation
(none)
total number weaned [n]
weaned_tot
62303
CC diallel w/par
62
f
3wks
N=72
2018
Taft1:1
Taft1
assisted reproduction
(none)
percentage of females responding to superovulation [%]
super_pct
19301
inbred
10
f
N=17
2006
Taft1:3
Taft1
assisted reproduction
(none)
total oocytes per donor [n]
oocyte_donor
19303
inbred
10
f
N=17
2006
Taft1:5
Taft1
assisted reproduction
(none)
percent of live oocytes per donor [%]
pct_live_super
19305
inbred
10
f
N=17
2006
Taft1:6
Taft1
assisted reproduction
(none)
percent of dead oocytes per donor [%]
pct_dead_super
19306
inbred
10
f
N=17
2006
Taft1:7
Taft1
assisted reproduction
(none)
percent of fragmented oocytes per donor [%]
pct_frag_super
19307
inbred
10
f
N=17
2006
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