MPD: Phenotype measures mapped to VT:0002160, reproductive system morphology trait

Phenotype measures associated with ontology term
VT:0002160 'reproductive system morphology trait'

This list includes measures mapped VT:0002160 AND its ontology descendants. Alternatively, you can show measures mapped to VT:0002160 only.

VT:0000627 mammary gland morphology trait
VT:0001126 ovary morphology trait
VT:0001142 vaginal opening morphology trait
VT:0001146 testis morphology trait
VT:0002216 seminiferous tubule morphology trait
VT:0002673 sperm quantity
VT:0002997 seminal gland size trait
VT:0005431 oocyte quantity
VT:0010019 epididymis mass
VT:0010042 sperm morphology trait
VT:0010290 milk calcium amount
VT:0010291 milk potassium amount
VT:0010292 milk sodium amount
VT:0010293 milk phosphorus amount
VT:0010295 milk magnesium amount
VT:0010710 milk copper amount
VT:0010711 milk iron amount
VT:0010714 milk zinc content
VT:0010808 milk sulfur amount
VT:1000644 testis mass

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Ankra-Badu1:12	Ankra-Badu1	organ weights	(none)	right testis weight [mg] TESTIS 21212	QTL population		both	10wks	N=502	2009

Chesler3:40	Chesler3	organ weights	(none)	testicular weight [g] testes_wt 43540	CC pre w/par	54	both	4wks	N=1	2011

Dorward1:1	Dorward1	histopathology	(none)	presence of ovarian granulosa cell tumor (0=normal 1=tumor) [designation] GC-tumor 16301	QTL population		f	8wks	N=162	2005

Dzur-Gejdosova1:2	Dzur-Gejdosova1	organ weights	(none)	testes weight [mg] TW 27202	QTL population		m	9wks	N=254	2012

Dzur-Gejdosova1:3	Dzur-Gejdosova1	microscopy	(none)	sperm cells counted in Bürker chamber [millions] SC 27203	QTL population		m	9wks	N=254	2012

Hadsell2:1	Hadsell2	mineral quantification	(none)	milk calcium (Ca) concentration [mM] calcium 110059	inbred	31	f	14-20wks	N=8	2018

Hadsell2:2	Hadsell2	mineral quantification	(none)	milk copper (Cu) concentration [µM] copper 110060	inbred	31	f	14-20wks	N=8	2018

Hadsell2:3	Hadsell2	mineral quantification	(none)	milk iron (Fe) concentration [µM] iron 110061	inbred	31	f	14-20wks	N=8	2018

Hadsell2:4	Hadsell2	mineral quantification	(none)	milk magnesium (Mg) concentration [mM] magnesium 110062	inbred	31	f	14-20wks	N=8	2018

Hadsell2:5	Hadsell2	mineral quantification	(none)	milk potassium (K) concentration [mM] potassium 110063	inbred	31	f	14-20wks	N=8	2018

Hadsell2:6	Hadsell2	mineral quantification	(none)	milk phosphorus (P) concentration [mM] phosphorus 110064	inbred	31	f	14-20wks	N=8	2018

Hadsell2:7	Hadsell2	mineral quantification	(none)	milk sodium (Na) concentration [mM] sodium 110065	inbred	31	f	14-20wks	N=8	2018

Hadsell2:8	Hadsell2	mineral quantification	(none)	milk sulfur (S) concentration [mM] sulfur 110066	inbred	31	f	14-20wks	N=8	2018

Hadsell2:9	Hadsell2	mineral quantification	(none)	milk zinc (Zn) concentration [µM] zinc 110067	inbred	31	f	14-20wks	N=8	2018

Handel1:41	Handel1	organ weights	(none)	seminal vesicle weight, left and right combined [g] seminal_vesicle 12041	inbred	14	m	8-10wks	N=5	2010

Handel1:45	Handel1	organ weights	(none)	testicular weight, left and right combined [g] testes 12045	inbred	14	m	8-10wks	N=5	2010

Handel1:49	Handel1	sperm count	(none)	sperm count (n x 10⁶ per mouse) [n] sperm_count 12049	inbred	14	m	8-10wks	N=5	2010

Hunter1:4	Hunter1	histopathology	(none)	mammary tumor latency, days after birth [d] tum_lat 6004	MMTV PyVT transgenic	28	f		N=18	1998

Hunter1:5	Hunter1	histopathology	(none)	tumor burden (body weight at sacrifice minus body weight at diagnosis of primary tumor) [g] tum_burd 6005	MMTV PyVT transgenic	28	f		N=18	1998

JaxKOMP-EAP:116	JaxKOMP-EAP	observation (SHIRPA)	(none)	genitalia presence genitalia_presence 100410 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:117	JaxKOMP-EAP	observation (SHIRPA)	(none)	genitalia size genitalia_size 100411 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:118	JaxKOMP-EAP	observation (SHIRPA)	(none)	genitalia morphology genitalia_morphology 100412 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-LAP:105	JaxKOMP-LAP	observation (SHIRPA)	(none)	genitalia presence genitalia_presence 101410 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:106	JaxKOMP-LAP	observation (SHIRPA)	(none)	genitalia size genitalia_size 101411 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:107	JaxKOMP-LAP	observation (SHIRPA)	(none)	genitalia morphology genitalia_morphology 101412 categorical	KOMP	148	both	66-72wks		2021

Klaassen1:1	Klaassen1	histopathology	cadmium	cadmium-induced toxicity to testis [designation] testis 16401 categorical	inbred	8	m	8wks		2001

Lazear1:1	Lazear1	organ weights	(none)	testis weight (1 testis) [g] testis_wt 63101	CC	12	m	15-22wks	N=2	2018

Lazear1:2	Lazear1	sperm count	(none)	number of sperm per mL of semen (x 10⁶) [n/mL] sperm_count 63102	CC	10	m	15-22wks	N=2	2018

Odet1:11	Odet1	organ weights	(none)	mean epididymis plus vas deferens weight [g] epidid_vasdef_wt 53711	inbred w/CC8	8	m	10-66wks	N=21	2015

Odet1:12	Odet1	organ weights	(none)	seminal vesicles weight [g] seminal_ves_wt 53712	inbred w/CC8	8	m	10-66wks	N=27	2015

Odet1:13	Odet1	organ weights	(none)	mean testis weight [g] testis_wt 53713	inbred w/CC8	8	m	10-66wks	N=27	2015

Odet1:21	Odet1	histopathology	(none)	mean seminiferous tubule radius, transverse section [µm] seminif_radius 53721	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:22	Odet1	histopathology	(none)	seminiferious epithelium length, transverse section [cm] seminif_length 53722	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:23	Odet1	histopathology	(none)	number of seminiferous tubules, transverse section [n] seminif_count 53723	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:24	Odet1	histopathology	(none)	number of seminiferous tubules with vacuoles, transverse section [n] seminif_vacuoles 53724	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:25	Odet1	histopathology	(none)	number of seminiferous tubules with many vacuoles, transverse section [n] seminif_many_vacuoles 53725	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:26	Odet1	histopathology	(none)	number of seminiferous tubules with germ cell loss, transverse section [n] seminif_germ_loss 53726	inbred w/CC8	8	m	10-66wks	N=18	2015

Odet1:27	Odet1	histopathology	(none)	number of seminiferous tubules with abnormal germ cells, transverse section [n] seminif_germ_abnormal 53727	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:28	Odet1	histopathology	(none)	number of seminiferous tubules with germ cell sloughing, transverse section [n] seminif_germ_slough 53728	inbred w/CC8	8	m	10-66wks	N=26	2015

Odet1:31	Odet1	sperm count	(none)	sperm count per mouse (x 10⁶) [n] sperm_per_mouse 53731	inbred w/CC8	8	m	10-66wks	N=21	2015

Odet1:32	Odet1	sperm count	(none)	sperm count per mg testis weight (x 10³) [n] sperm_per_testis 53732	inbred w/CC8	8	m	10-66wks	N=20	2015

Odet1:33	Odet1	sperm count	(none)	sperm count per seminiferous epithelium length (x 10³) [n] sperm_per_seminif 53733	inbred w/CC8	8	m	10-66wks	N=19	2015

Odet1:41	Odet1	histopathology	(none)	percentage of sperm with normal morphology [%] sperm_normal 53741	inbred w/CC8	8	m	10-66wks	N=14	2015

Odet1:42	Odet1	histopathology	(none)	percentage of sperm with abnormal head shape [%] sperm_abnormal_head 53742	inbred w/CC8	8	m	10-66wks	N=14	2015

Odet1:43	Odet1	histopathology	(none)	percentage of sperm with abnormal tail bending [%] sperm_abnormal_tail 53743	inbred w/CC8	8	m	10-66wks	N=14	2015

Odet1:44	Odet1	histopathology	(none)	percentage of sperm with broken tails [%] sperm_broken_tail 53744	inbred w/CC8	8	m	10-66wks	N=14	2015

Parker1:1	Parker1	assisted reproduction	(none)	mean number of oocytes per female following treatment [n] oocyte_num 62901 2.5 IU eCG 5 IU eCG 5 + 5 IU eCG	inbred	6	f	3-6wks	N=18	2011

Parker1:4	Parker1	assisted reproduction	(none)	mean number of fertilized oocytes per female following treatment [n] oocyte_fert_num 62904 2.5 IU eCG 5 IU eCG 5 + 5 IU eCG	inbred	6	f	3-6wks	N=18	2011

Parker1:7	Parker1	assisted reproduction	(none)	percentage of oocytes that are fertilized per female following treatment [%] oocyte_fert_pct 62907 2.5 IU eCG 5 IU eCG 5 + 5 IU eCG	inbred	6	f	3-6wks	N=18	2011

Payseur2:1	Payseur2	organ weights	(none)	right testis weight adjusted for body weight [mg/g] RelRTestiswt 64001	QTL population		m	10-11wks	N=312	2018

Payseur2:2	Payseur2	organ weights	(none)	right testis weight [mg] RTestisWt 64002	QTL population		m	10-11wks	N=312	2018

Payseur2:3	Payseur2	sperm count	(none)	sperm count per mL (x10⁶) [n] SpermDensity 64003	QTL population		m	10-11wks	N=312	2018

Payseur2:4	Payseur2	organ dimensions	(none)	testis width [mm] TestisWidth 64004	QTL population		m	10-11wks	N=312	2018

Payseur2:5	Payseur2	organ dimensions	(none)	testis height [mm] TestisHeight 64005	QTL population		m	10-11wks	N=312	2018

Payseur2:6	Payseur2	histopathology	(none)	mulinucleated syncytia [n] MNSyncytiaPerTestis 64006	QTL population		m	10-11wks	N=312	2018

Payseur2:7	Payseur2	histopathology	(none)	tubules with apoptosis [n] TubuleswApop 64007	QTL population		m	10-11wks	N=312	2018

Payseur2:8	Payseur2	histopathology	(none)	spermatogonia with apoptosis [n] ApopGonia 64008	QTL population		m	10-11wks	N=312	2018

Payseur2:9	Payseur2	histopathology	(none)	meiotic cells with apoptosis [n] ApopMeiotic 64009	QTL population		m	10-11wks	N=312	2018

Payseur2:10	Payseur2	histopathology	(none)	round spermatids with apoptosis [n] ApopRS 64010	QTL population		m	10-11wks	N=312	2018

Payseur2:11	Payseur2	histopathology	(none)	Stage VII Sertoli cells [n] VIIsertolis 64011	QTL population		m	10-11wks	N=312	2018

Payseur2:12	Payseur2	histopathology	(none)	Stage VII pachytene cells [n] VIIpachys 64012	QTL population		m	10-11wks	N=312	2018

Payseur2:13	Payseur2	histopathology	(none)	Stage VII round spermatids [n] VIIRSs 64013	QTL population		m	10-11wks	N=312	2018

Payseur2:14	Payseur2	histopathology	(none)	Stage VII pachytene cells per Sertoli cell [n] PachyperSertoli 64014	QTL population		m	10-11wks	N=312	2018

Payseur2:15	Payseur2	histopathology	(none)	Stage VII round spermatids per Sertoli cell [n] RSperSertoli 64015	QTL population		m	10-11wks	N=312	2018

Payseur2:16	Payseur2	histopathology	(none)	Stage VII round spermatids per pachytene cell [n] RSperPachy 64016	QTL population		m	10-11wks	N=312	2018

Payseur2:17	Payseur2	histopathology	(none)	Stage VII mean tubule area [µm²] VIITubuleArea 64017	QTL population		m	10-11wks	N=312	2018

Shorter4:2	Shorter4	organ weights	(none)	testis weight [g] testis 110094 left right	CC	12	m	15-33wks	N=3	2019

Shorter4:4	Shorter4	organ weights	(none)	testis weight mean [g] testis_mean 110096	CC	12	m	15-33wks	N=3	2019

Shorter4:5	Shorter4	organ weights	(none)	testis weight as a percentage of body weight [%] testis_pct_bw 110097	CC	12	m	15-33wks	N=3	2019

Shorter4:6	Shorter4	organ weights	(none)	epididymis plus vas deferens weight [g] epidid_vd 110098 left right	CC	12	m	15-33wks	N=3	2019

Shorter4:8	Shorter4	organ weights	(none)	epididymis plus vas deferens weight mean [g] epidid_vd_mean 110100	CC	12	m	15-33wks	N=3	2019

Shorter4:9	Shorter4	organ weights	(none)	epididymis plus vas deferens weight as a percentage of body weight [%] epidid_vd_pct_bw 110101	CC	12	m	15-33wks	N=3	2019

Shorter4:10	Shorter4	organ weights	(none)	seminal vesicles weight total [g] semin_vesi_tot 110102	CC	12	m	15-33wks	N=3	2019

Shorter4:11	Shorter4	organ weights	(none)	seminal vesicles weight as a percentage of body weight [%] semin_vesi_pct_bw 110103	CC	12	m	15-33wks	N=3	2019

Shorter4:12	Shorter4	sperm count	(none)	sperm count per mouse (x 10⁶) [n] sperm_count 110104	CC	12	m	15-33wks	N=3	2019

Shorter4:13	Shorter4	sperm count	(none)	sperm count per mg testis weight (x 10³) [n/mg] sperm_adj 110105	CC	12	m	15-33wks	N=3	2019

Shorter4:22	Shorter4	histopathology	(none)	percentage of sperm with normal morphology [%] normal_sperm 110114	CC	12	m	15-33wks	N=3	2019

Shorter4:23	Shorter4	histopathology	(none)	percentage of sperm with abnormal head shape [%] abnormal_head 110115	CC	12	m	15-33wks	N=3	2019

Shorter4:24	Shorter4	histopathology	(none)	percentage of sperm with abnormal tail bending [%] abnormal_tail 110116	CC	12	m	15-33wks	N=3	2019

Shorter4:25	Shorter4	histopathology	(none)	percentage of sperm with broken tails [%] broken_tail 110117	CC	12	m	15-33wks	N=3	2019

Shorter5:2	Shorter5	organ weights	(none)	testis weight [g] testis 110143 left right	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:4	Shorter5	organ weights	(none)	testis weight mean [g] testis_mean 110121	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:5	Shorter5	organ weights	(none)	testis weight as percentage of body weight [%] testis_pct_bw 110122	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:6	Shorter5	organ weights	(none)	epididymis plus vas deferens weight [g] epidid_vd 110145 left right	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:8	Shorter5	organ weights	(none)	epididymis plus vas deferens weight mean [g] epidid_vd_mean 110125	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:9	Shorter5	organ weights	(none)	epididymis plus vas deferens weight as percentage of body weight [%] epidid_vd_pct_bw 110126	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:10	Shorter5	organ weights	(none)	seminal vesicles weight total [g] semin_vesi_tot 110127	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:11	Shorter5	organ weights	(none)	seminal vesicles weight as percentage of body weight [%] semin_vesi_pct_bw 110128	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:12	Shorter5	sperm count	(none)	sperm count per mouse (x 10⁶) [n] sperm_count 110129	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:13	Shorter5	sperm count	(none)	sperm count per mg testis weight (x 10³) [n/mg] sperm_adj 110130	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:22	Shorter5	histopathology	(none)	percentage of sperm with normal morphology [%] normal_sperm 110139	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:23	Shorter5	histopathology	(none)	percentage of sperm with abnormal head shape [%] abnormal_head 110140	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:24	Shorter5	histopathology	(none)	percentage of sperm with abnormal tail bending [%] abnormal_tail 110141	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:25	Shorter5	histopathology	(none)	percentage of sperm with broken tails [%] broken_tail 110142	CC RIX	28	m	7-44wks	N=4	2019

Shorter8:3	Shorter8	organ weights	(none)	testis weight [g] testis 110158 left right	DO population		m	12-15wks	N=150	2019

Shorter8:5	Shorter8	organ weights	(none)	testis weight mean [g] testis_mean 110160	DO population		m	12-15wks	N=150	2019

Shorter8:6	Shorter8	organ weights	(none)	testis weight as percentage of body weight [%] testis_pct_bw 110161	DO population		m	12-15wks	N=150	2019

Shorter8:7	Shorter8	organ weights	(none)	epididymis plus vas deferens weight [g] epidid_vd 110162 left right	DO population		m	12-15wks	N=150	2019

Shorter8:9	Shorter8	organ weights	(none)	epididymis plus vas deferens weight mean [g] epidid_vd_mean 110164	DO population		m	12-15wks	N=150	2019

Shorter8:10	Shorter8	organ weights	(none)	epididymis plus vas deferens weight as percentage of body weight [%] epidid_vd_pct_bw 110165	DO population		m	12-15wks	N=150	2019

Shorter8:11	Shorter8	organ weights	(none)	seminal vesicles weight total [g] semin_vesi_tot 110166	DO population		m	12-15wks	N=150	2019

Shorter8:12	Shorter8	organ weights	(none)	seminal vesicles weight as percentage of body weight [%] semin_vesi_pct_bw 110167	DO population		m	12-15wks	N=150	2019

Shorter8:13	Shorter8	sperm count	(none)	sperm count per mouse (x10⁶) [n] sperm_count 110168	DO population		m	12-15wks	N=150	2019

Shorter8:14	Shorter8	sperm count	(none)	sperm count per mg testis weight (x10³) [n] sperm_adj 110169	DO population		m	12-15wks	N=149	2019

Shorter8:27	Shorter8	histopathology	(none)	percentage of sperm with normal morphology [%] normal_sperm 110182	DO population		m	12-15wks	N=150	2019

Shorter8:28	Shorter8	histopathology	(none)	percentage of sperm with abnormal head shape [%] abnormal_head 110183	DO population		m	12-15wks	N=150	2019

Shorter8:29	Shorter8	histopathology	(none)	percentage of sperm with abnormal tail bending [%] abnormal_tail 110184	DO population		m	12-15wks	N=150	2019

Shorter8:30	Shorter8	histopathology	(none)	percentage of sperm with broken tails [%] broken_tail 110185	DO population		m	12-15wks	N=150	2019

Taft1:1	Taft1	assisted reproduction	(none)	percentage of females responding to superovulation [%] super_pct 19301	inbred	10	f		N=17	2006

Taft1:3	Taft1	assisted reproduction	(none)	total oocytes per donor [n] oocyte_donor 19303	inbred	10	f		N=17	2006

Taft1:5	Taft1	assisted reproduction	(none)	percent of live oocytes per donor [%] pct_live_super 19305	inbred	10	f		N=17	2006

Taft1:6	Taft1	assisted reproduction	(none)	percent of dead oocytes per donor [%] pct_dead_super 19306	inbred	10	f		N=17	2006

Taft1:7	Taft1	assisted reproduction	(none)	percent of fragmented oocytes per donor [%] pct_frag_super 19307	inbred	10	f		N=17	2006

Taft1:14	Taft1	assisted reproduction	(none)	fragmented oocytes, percentage of IVF dish cells [%] pct_frag_IVF 19314	inbred	10	f		N=17	2006

Yuan4:2	Yuan4	colony observation	(none)	age at vaginal opening (patency) [d] age_VO 25402	inbred	33	f	2-7wks	N=38	2009

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