Project measure / variable:   Hadsell2   magnesium

ID, description, units MPD:110062   magnesium   milk magnesium (Mg) concentration   [mM]  
Data set, strains Hadsell2   inbred   31 strains     sex: f     age: 14-20wks
Procedure mineral quantification
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  STRAIN COMPARISON PLOT
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Hadsell2 - milk magnesium (Mg) concentration



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested31 strains
Mean of the strain means10.607   mM
Median of the strain means10.676   mM
SD of the strain means± 1.2832
Coefficient of variation (CV)0.121
Min–max range of strain means8.25   –   12.963   mM
Mean sample size per strain7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 30 374.7437 12.4915 8.3437 < 0.0001
Residuals 208 311.3976 1.4971


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.752 0.68051   6 0.27782 0.0633 10.0, 11.95 0.11
A/J f 9.17 0.60321   4 0.30161 0.0658 8.6, 10.02 -1.12
AKR/J f 11.283 0.3487   7 0.1318 0.0309 10.8, 11.85 0.53
BALB/cByJ f 11.433 0.88558   9 0.29519 0.0775 9.85, 13.05 0.64
BTBR T+ Itpr3tf/J f 8.37 1.2308   7 0.46521 0.1471 7.17, 10.84 -1.74
BUB/BnJ f 11.941 0.73809   7 0.27897 0.0618 10.76, 13.23 1.04
C3H/HeJ f 9.2156 0.87758   9 0.29253 0.0952 7.92, 10.45 -1.08
C57BL/6J f 8.749 1.4128   10 0.44678 0.1615 5.63, 10.24 -1.45
C57L/J f 10.041 1.4926   8 0.52771 0.1486 8.05, 13.02 -0.44
C58/J f 11.412 1.1293   6 0.46103 0.099 9.17, 12.35 0.63
CBA/J f 10.666 0.83964   7 0.31735 0.0787 9.54, 11.69 0.05
CE/J f 11.98 1.0434   7 0.39435 0.0871 10.64, 13.95 1.07
CZECHII/EiJ f 8.25 1.5415   2   1.09 0.1868 7.16, 9.34 -1.84
DBA/1J f 11.589 1.4122   7 0.53376 0.1219 9.68, 14.22 0.77
DBA/2J f 11.907 0.77783   6 0.31755 0.0653 10.86, 12.92 1.01
FVB/NJ f 10.747 1.5666   7 0.59213 0.1458 7.99, 13.31 0.11
I/LnJ f 9.944 0.84459   5 0.37771 0.0849 9.14, 11.3 -0.52
KK/HlJ f 12.963 2.5915   4 1.2958 0.1999 10.76, 16.21 1.84
LG/J f 12.03 1.4799   9 0.49331 0.123 9.42, 14.24 1.11
LP/J f 8.8173 0.91176   11 0.27491 0.1034 7.11, 10.28 -1.4
MA/MyJ f 11.219 1.7579   9 0.58598 0.1567 9.4, 15.04 0.48
NOD/ShiLtJ f 12.037 1.5203   8 0.5375 0.1263 10.33, 14.26 1.11
NON/ShiLtJ f 10.523 0.71621   7 0.2707 0.0681 9.91, 11.91 -0.07
NZW/LacJ f 10.66 0.83073   8 0.29371 0.0779 9.56, 11.44 0.04
PL/J f 10.676 0.71041   8 0.25117 0.0665 9.78, 11.79 0.05
QSi5 f 12.904 1.2229   14 0.32683 0.0948 11.34, 15.45 1.79
RIIIS/J f 9.7925 1.8392   12 0.53092 0.1878 7.76, 14.63 -0.64
SEA/GnJ f 10.211 0.99176   11 0.29903 0.0971 8.26, 11.6 -0.31
SJL/J f 10.808 1.9236   5 0.86025 0.178 8.5, 13.07 0.16
SM/J f 9.1988 1.3588   8 0.48042 0.1477 7.37, 10.95 -1.1
SWR/J f 9.5391 0.65468   11 0.19739 0.0686 8.75, 11.03 -0.83


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.7516666667 0.4995170797 11.73643195 9.7669013833
A/J f 9.17 0.6117809815 10.3760862303 7.9639137697
AKR/J f 11.2828571429 0.4624629525 12.1945726358 10.37114165
BALB/cByJ f 11.4333333333 0.4078539877 12.2373908202 10.6292758464
BTBR T+ Itpr3tf/J f 8.37 0.4624629525 9.2817154929 7.4582845071
BUB/BnJ f 11.9414285714 0.4624629525 12.8531440643 11.0297130785
C3H/HeJ f 9.2155555556 0.4078539877 10.0196130424 8.4114980687
C57BL/6J f 8.749 0.3869242661 9.5117959085 7.9862040915
C57L/J f 10.04125 0.4325944806 10.8940817522 9.1884182478
C58/J f 11.4116666667 0.4995170797 12.39643195 10.4269013833
CBA/J f 10.6657142857 0.4624629525 11.5774297786 9.7539987928
CE/J f 11.98 0.4624629525 12.8917154929 11.0682845071
CZECHII/EiJ f 8.25 0.8651889612 9.9556635043 6.5443364957
DBA/1J f 11.5885714286 0.4624629525 12.5002869215 10.6768559357
DBA/2J f 11.9066666667 0.4995170797 12.89143195 10.9219013833
FVB/NJ f 10.7471428571 0.4624629525 11.65885835 9.8354273642
I/LnJ f 9.944 0.5471935448 11.0227563191 8.8652436809
KK/HlJ f 12.9625 0.6117809815 14.1685862303 11.7564137697
LG/J f 12.03 0.4078539877 12.8340574869 11.2259425131
LP/J f 8.8172727273 0.3689178126 9.5445700892 8.0899753653
MA/MyJ f 11.2188888889 0.4078539877 12.0229463758 10.414831402
NOD/ShiLtJ f 12.0375 0.4325944806 12.8903317522 11.1846682478
NON/ShiLtJ f 10.5228571429 0.4624629525 11.4345726358 9.61114165
NZW/LacJ f 10.66 0.4325944806 11.5128317522 9.8071682478
PL/J f 10.67625 0.4325944806 11.5290817522 9.8234182478
QSi5 f 12.9035714286 0.3270106898 13.5482516361 12.258891221
RIIIS/J f 9.7925 0.3532119143 10.4888342097 9.0961657903
SEA/GnJ f 10.2109090909 0.3689178126 10.9382064529 9.4836117289
SJL/J f 10.808 0.5471935448 11.8867563191 9.7292436809
SM/J f 9.19875 0.4325944806 10.0515817522 8.3459182478
SWR/J f 9.5390909091 0.3689178126 10.2663882711 8.8117935471




  GWAS USING LINEAR MIXED MODELS