Phenotype measure:   Hadsell2   calcium

ID, description, units MPD:110059   calcium   milk calcium (Ca) concentration   [mM]
Data set, strains Hadsell2   inbred   31 strains     sex: f     age: 14-20wks
Procedure mineral quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Hadsell2 - milk calcium (Ca) concentration



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested31 strains
Mean of the strain means92.95   mM
Median of the strain means93.75   mM
SD of the strain means± 8.2021
Coefficient of variation (CV)0.0882
Min–max range of strain means76.0   –   105.2   mM
Mean sample size per strain7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 30 15985.8162 532.8605 4.8649 < 0.0001
Residuals 208 22782.5931 109.5317


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 96.37 4.2618   6 1.7399 0.0442 91.09, 103.7 0.42
A/J f 92.56 8.7918   4 4.3959 0.095 80.11, 100.2 -0.05
AKR/J f 96.74 6.6607   7 2.5175 0.0689 88.47, 108.2 0.46
BALB/cByJ f 104.3 8.6512   9 2.8837 0.0829 86.47, 117.3 1.38
BTBR T+ Itpr3tf/J f 83.03 5.0804   7 1.9202 0.0612 78.49, 91.46 -1.21
BUB/BnJ f 102.5 7.4809   7 2.8275 0.073 93.09, 114.0 1.16
C3H/HeJ f 95.03 12.466   9 4.1553 0.1312 78.86, 119.7 0.25
C57BL/6J f 85.92 11.942   10 3.7763 0.139 63.01, 101.3 -0.86
C57L/J f 87.35 6.8876   8 2.4351 0.0789 77.99, 99.95 -0.68
C58/J f 97.38 10.885   6 4.4437 0.1118 77.86, 108.9 0.54
CBA/J f 101.5 10.297   7 3.8921 0.1015 87.72, 118.2 1.04
CE/J f 105.2 10.417   7 3.9372 0.099 88.22, 121.5 1.49
CZECHII/EiJ f 80.67 19.856   2   14.04 0.2461 66.63, 94.71 -1.5
DBA/1J f 100.3 13.894   7 5.2516 0.1385 81.61, 121.4 0.9
DBA/2J f 99.63 6.6733   6 2.7243 0.067 93.34, 111.3 0.81
FVB/NJ f 93.67 14.735   7 5.5692 0.1573 74.62, 122.9 0.09
I/LnJ f 90.82 4.7538   5 2.126 0.0523 84.73, 97.95 -0.26
KK/HlJ f 93.76 17.482   4 8.7408 0.1864 79.61, 116.0 0.1
LG/J f 104.4 11.033   9 3.6776 0.1057 83.6, 121.5 1.4
LP/J f 86.12 7.293   11 2.1989 0.0847 74.49, 103.3 -0.83
MA/MyJ f 98.8 18.078   9 6.026 0.183 77.36, 136.8 0.71
NOD/ShiLtJ f 99.47 7.8232   8 2.7659 0.0786 87.1, 112.7 0.79
NON/ShiLtJ f 82.09 4.9641   7 1.8762 0.0605 76.37, 89.59 -1.32
NZW/LacJ f 83.17 5.3517   8 1.8921 0.0643 76.99, 90.84 -1.19
PL/J f 76.0 9.3822   8 3.3171 0.1235 60.07, 88.97 -2.07
QSi5 f 104.7 11.019   14 2.945 0.1052 90.09, 125.9 1.43
RIIIS/J f 93.75 14.476   12 4.1787 0.1544 72.25, 117.9 0.1
SEA/GnJ f 85.25 6.1816   11 1.8638 0.0725 72.87, 93.09 -0.94
SJL/J f 89.05 14.787   5 6.6128 0.1661 73.62, 107.6 -0.48
SM/J f 82.44 10.492   8 3.7096 0.1273 68.51, 97.2 -1.28
SWR/J f 89.56 9.2568   11 2.791 0.1034 77.36, 108.6 -0.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 96.3733333333 4.2726201472 104.7965247742 87.9501418925
A/J f 92.5575 5.2328696127 102.8737605179 82.2412394821
AKR/J f 96.74 3.955677611 104.5383599402 88.9416400598
BALB/cByJ f 104.3022222222 3.4885797418 111.1797292342 97.4247152103
BTBR T+ Itpr3tf/J f 83.0328571429 3.955677611 90.831217083 75.2344972027
BUB/BnJ f 102.51 3.955677611 110.3083599402 94.7116400598
C3H/HeJ f 95.0344444444 3.4885797418 101.9119514564 88.1569374325
C57BL/6J f 85.923 3.3095573349 92.4475760345 79.3984239655
C57L/J f 87.34625 3.7001975882 94.6409477687 80.0515522313
C58/J f 97.375 4.2726201472 105.7981914408 88.9518085592
CBA/J f 101.4728571429 3.955677611 109.271217083 93.6744972027
CE/J f 105.1742857143 3.955677611 112.9726456545 97.3759257741
CZECHII/EiJ f 80.67 7.4003951764 95.2593955374 66.0806044626
DBA/1J f 100.2871428571 3.955677611 108.0855027973 92.488782917
DBA/2J f 99.63 4.2726201472 108.0531914408 91.2068085592
FVB/NJ f 93.6742857143 3.955677611 101.4726456545 85.8759257741
I/LnJ f 90.816 4.6804208685 100.0431439167 81.5888560833
KK/HlJ f 93.7625 5.2328696127 104.0787605179 83.4462394821
LG/J f 104.37 3.4885797418 111.247507012 97.492492988
LP/J f 86.1209090909 3.1555391058 92.3418482505 79.8999699314
MA/MyJ f 98.7966666667 3.4885797418 105.6741736786 91.9191596547
NOD/ShiLtJ f 99.47125 3.7001975882 106.7659477687 92.1765522313
NON/ShiLtJ f 82.0885714286 3.955677611 89.8869313687 74.2902114884
NZW/LacJ f 83.16875 3.7001975882 90.4634477687 75.8740522313
PL/J f 75.99875 3.7001975882 83.2934477687 68.7040522313
QSi5 f 104.7464285714 2.7970864629 110.2607017673 99.2321553756
RIIIS/J f 93.7458333333 3.0211986795 99.7019291204 87.7897375463
SEA/GnJ f 85.2490909091 3.1555391058 91.4700300686 79.0281517495
SJL/J f 89.048 4.6804208685 98.2751439167 79.8208560833
SM/J f 82.435 3.7001975882 89.7296977687 75.1403022313
SWR/J f 89.5618181818 3.1555391058 95.7827573414 83.3408790223




  GWAS USING LINEAR MIXED MODELS