Phenotype measure:   Hadsell2   zinc

ID, description, units MPD:110067   zinc   milk zinc (Zn) concentration   [µM]
Data set, strains Hadsell2   inbred   31 strains     sex: f     age: 14-20wks
Procedure mineral quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Hadsell2 - milk zinc (Zn) concentration



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested31 strains
Mean of the strain means244.6   µM
Median of the strain means236.2   µM
SD of the strain means± 41.749
Coefficient of variation (CV)0.1707
Min–max range of strain means160.4   –   331.4   µM
Mean sample size per strain7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 30 398730.9928 13291.0331 7.2196 < 0.0001
Residuals 208 382920.2738 1840.9629


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 310.7 23.9   6 9.7569 0.0769 284.0, 347.1 1.58
A/J f 201.2 43.902   4 21.951 0.2182 139.5, 241.3 -1.04
AKR/J f 206.7 34.939   7 13.206 0.169 162.9, 270.1 -0.91
BALB/cByJ f 207.6 45.669   9 15.223 0.22 133.5, 268.9 -0.89
BTBR T+ Itpr3tf/J f 234.8 32.324   7 12.217 0.1377 199.8, 287.3 -0.23
BUB/BnJ f 269.7 18.281   7 6.9096 0.0678 251.0, 305.4 0.6
C3H/HeJ f 225.9 31.575   9 10.525 0.1398 173.3, 267.0 -0.45
C57BL/6J f 223.1 31.008   10 9.8055 0.139 157.2, 283.8 -0.51
C57L/J f 198.3 31.312   8 11.07 0.1579 159.7, 264.7 -1.11
C58/J f 310.2 60.81   6 24.824 0.196 202.2, 366.4 1.57
CBA/J f 208.4 18.787   7 7.1007 0.0902 173.8, 234.3 -0.87
CE/J f 233.7 35.013   7 13.234 0.1498 166.7, 283.1 -0.26
CZECHII/EiJ f 236.2 85.7   2   60.6 0.3628 175.6, 296.8 -0.2
DBA/1J f 243.5 32.285   7 12.203 0.1326 212.7, 291.5 -0.03
DBA/2J f 237.0 15.617   6 6.3756 0.0659 217.2, 253.2 -0.18
FVB/NJ f 231.9 42.504   7 16.065 0.1833 153.9, 290.3 -0.3
I/LnJ f 283.1 20.43   5 9.1364 0.0722 248.0, 301.0 0.92
KK/HlJ f 299.8 48.2   4 24.1 0.1608 236.6, 353.4 1.32
LG/J f 252.7 42.693   9 14.231 0.169 168.9, 312.2 0.19
LP/J f 230.2 21.073   11 6.3536 0.0915 205.1, 265.9 -0.34
MA/MyJ f 193.4 52.29   9 17.431 0.2704 137.5, 285.8 -1.23
NOD/ShiLtJ f 331.4 49.562   8 17.523 0.1496 273.3, 409.1 2.08
NON/ShiLtJ f 274.7 45.364   7 17.146 0.1651 219.3, 356.9 0.72
NZW/LacJ f 303.9 34.653   8 12.252 0.114 250.5, 354.4 1.42
PL/J f 282.8 29.648   8 10.482 0.1048 250.9, 346.5 0.92
QSi5 f 287.1 79.71   14 21.303 0.2776 157.5, 489.4 1.02
RIIIS/J f 253.0 38.84   12 11.212 0.1535 205.0, 344.5 0.2
SEA/GnJ f 186.7 64.31   11 19.391 0.3444 139.6, 370.0 -1.39
SJL/J f 237.0 44.793   5 20.032 0.189 180.0, 294.0 -0.18
SM/J f 160.4 31.554   8 11.156 0.1967 115.0, 212.9 -2.02
SWR/J f 227.0 39.631   11 11.949 0.1746 179.5, 324.6 -0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 310.6666666667 17.5164820226 345.1992664214 276.1340669119
A/J f 201.175 21.453221522 243.4686244455 158.8813755545
AKR/J f 206.7428571429 16.2171111339 238.7138320932 174.7718821925
BALB/cByJ f 207.5666666667 14.3021476814 235.762416297 179.3709170364
BTBR T+ Itpr3tf/J f 234.8285714286 16.2171111339 266.7995463789 202.8575964782
BUB/BnJ f 269.7 16.2171111339 301.6709749503 237.7290250496
C3H/HeJ f 225.8666666667 14.3021476814 254.062416297 197.6709170364
C57BL/6J f 223.07 13.5682086316 249.8188367503 196.3211632497
C57L/J f 198.2625 15.1697184165 228.1686086463 168.3563913537
C58/J f 310.1666666667 17.5164820226 344.6992664214 275.6340669119
CBA/J f 208.3857142857 16.2171111339 240.3566892361 176.4147393354
CE/J f 233.6571428571 16.2171111339 265.6281178075 201.6861679068
CZECHII/EiJ f 236.2 30.3394368331 296.0122172927 176.3877827073
DBA/1J f 243.5142857143 16.2171111339 275.4852606646 211.5433107639
DBA/2J f 237.0 17.5164820226 271.5325997548 202.4674002452
FVB/NJ f 231.9285714286 16.2171111339 263.8995463789 199.9575964782
I/LnJ f 283.1 19.1883446639 320.92856771 245.27143229
KK/HlJ f 299.75 21.453221522 342.0436244455 257.4563755545
LG/J f 252.6666666667 14.3021476814 280.862416297 224.4709170364
LP/J f 230.2090909091 12.9367793333 255.7131060563 204.7050757619
MA/MyJ f 193.3888888889 14.3021476814 221.5846385192 165.1931392586
NOD/ShiLtJ f 331.3875 15.1697184165 361.2936086463 301.4813913537
NON/ShiLtJ f 274.7285714286 16.2171111339 306.6995463789 242.7575964782
NZW/LacJ f 303.9 15.1697184165 333.8061086463 273.9938913537
PL/J f 282.8 15.1697184165 312.7061086463 252.8938913537
QSi5 f 287.1285714286 11.467229254 309.7354646171 264.52167824
RIIIS/J f 252.95 12.3860232207 277.3682354586 228.5317645414
SEA/GnJ f 186.7272727273 12.9367793333 212.2312878745 161.22325758
SJL/J f 236.98 19.1883446639 274.8085677099 199.15143229
SM/J f 160.425 15.1697184165 190.3311086463 130.5188913537
SWR/J f 226.9636363636 12.9367793333 252.4676515109 201.4596212164




  GWAS USING LINEAR MIXED MODELS