MPD: Phenotype measures mapped to MA:0000308, axial skeleton

Phenotype measures associated with ontology term
MA:0000308 'axial skeleton'

All measures in this list are mapped to the ontology descendants of MA:0000308. None are mapped to MA:0000308 directly.

MA:0000309 vertebra
MA:0000310 caudal vertebra
MA:0000311 cervical vertebra
MA:0000312 lumbar vertebra
MA:0000314 thoracic vertebra
MA:0000315 rib
MA:0000316 cranium
MA:0000348 tooth
MA:0000349 incisor
MA:0001420 coccygeal vertebra
MA:0001487 mandible
MA:0001491 maxilla
MA:0001492 maxilla alveolar process
MA:0001497 zygomatic bone
MA:0002796 frontal suture

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Beamer2:22	Beamer2	computed tomography	(none)	trabecular bone, surface area to volume (ratio) [ratio] trab_ratio 11222	QTL population		f	16wks	N=999	2001

Beamer2:23	Beamer2	computed tomography	(none)	trabecular bone, average thickness [mm] trab_thickness 11223	QTL population		f	16wks	N=999	2001

Beamer2:24	Beamer2	computed tomography	(none)	trabecular bone, average number [n] trab_number 11224	QTL population		f	16wks	N=999	2001

Beamer2:25	Beamer2	computed tomography	(none)	trabecular bone, average spacing [mm] trab_spacing 11225	QTL population		f	16wks	N=999	2001

Burke1:2	Burke1	computed tomography	(none)	caudal 8 (C8) vertebra length [mm] Vert_length 26302	QTL population		f	80wks	N=505	2012

Burke1:3	Burke1	computed tomography	(none)	vertebra bone volume fraction [%] Vert_BVF 26303	QTL population		f	80wks	N=505	2012

Burke1:4	Burke1	computed tomography	(none)	vertebra trabecular plate number, number of trabeculae per mm along a cross-sectional line of the CT scan of the vertebral bone [n] Vert_TPN 26304	QTL population		f	80wks	N=505	2012

Burke1:5	Burke1	biomechanical test	(none)	vertebra mechanical load at breaking [N] Vert_Ult_Load 26305	QTL population		f	80wks	N=505	2012

Donahue1:9	Donahue1	DXA	(none)	total skull length [mm] skull_length 11518	inbred w/CC7	29	both	15-16wks	N=9	2002

Donahue1:10	Donahue1	DXA	(none)	nose length (craniofacial) [mm] nose_length 11519	inbred w/CC7	29	both	15-16wks	N=9	2002

Donahue1:11	Donahue1	DXA	(none)	skull height [mm] skull_height 11520	inbred w/CC7	29	both	15-16wks	N=9	2002

Donahue1:12	Donahue1	DXA	(none)	skull width [mm] skull_width 11521	inbred w/CC7	29	both	15-16wks	N=9	2002

Donahue1:13	Donahue1	DXA	(none)	inner canthal distance [mm] inner_canthal 11522	inbred w/CC7	29	both	15-16wks	N=9	2002

Donahue1:14	Donahue1	DXA	(none)	length of upper jaw [mm] upper_jaw 11523	inbred w/CC7	29	both	15-16wks	N=9	2002

Donahue1:15	Donahue1	DXA	(none)	length of lower jaw [mm] lower_jaw 11524	inbred w/CC7	29	both	15-16wks	N=9	2002

Everett1:3	Everett1	bone dimensions	(none)	mandible, infradentale to menton [mm] ant_length 11003	inbred	14	both	8-9wks	N=10	2003

Everett1:4	Everett1	bone dimensions	(none)	mandible, menton to gonion [mm] post_length 11004	inbred	14	both	8-9wks	N=10	2003

Everett1:5	Everett1	bone dimensions	(none)	mandible, infradentale to posterior ramus [mm] mid_length 11005	inbred	14	both	8-9wks	N=10	2003

Everett1:6	Everett1	bone dimensions	(none)	mandible, posterior molar to menton [mm] mid_height 11006	inbred	14	both	8-9wks	N=10	2003

Everett1:7	Everett1	bone dimensions	(none)	mandible, condylar process [mm] condyle 11007	inbred	14	both	8-9wks	N=10	2003

Everett1:8	Everett1	bone dimensions	(none)	mandible, infradentale to posterior condyle [mm] incisor_condyle 11008	inbred	14	both	8-9wks	N=10	2003

Everett1:9	Everett1	bone dimensions	(none)	mandible, infradentale to gonion [mm] incisor_gonion 11009	inbred	14	both	8-9wks	N=10	2003

Everett1:10	Everett1	bone dimensions	(none)	mandible, posterior molar to posterior condyle [mm] molar_condyle 11010	inbred	14	both	8-9wks	N=10	2003

Everett1:11	Everett1	bone dimensions	(none)	mandible, anterior molar to posterior molar [mm] molar_arch 11011	inbred	14	both	8-9wks	N=10	2003

Everett1:12	Everett1	bone dimensions	(none)	mandible, diastema to pogonion [mm] incisor_region 11012	inbred	14	both	8-9wks	N=10	2003

Everett1:13	Everett1	bone dimensions	(none)	mandible, antegonion to sigmoid [mm] ramus_height 11013	inbred	14	both	8-9wks	N=10	2003

Everett1:14	Everett1	bone dimensions	(none)	mandible, anterior area [mm²] ant_area 11014	inbred	14	both	8-9wks	N=10	2003

Everett1:15	Everett1	bone dimensions	(none)	mandible, posterior area [mm²] post_area 11015	inbred	14	both	8-9wks	N=10	2003

Everett1:16	Everett1	bone dimensions	(none)	mandible, concavity of incisor to anterior molar [mm²] teeth_space 11016	inbred	14	both	8-9wks	N=10	2003

Everett1:17	Everett1	bone dimensions	(none)	mandible, concavity of posterior ramus [mm²] ramus_space 11017	inbred	14	both	8-9wks	N=10	2003

GMC18:41	GMC18	X-ray	(none)	number of lumbar vertebrae [n] lumbar_num 56741	inbred w/CC8	8	both	17-18wks	N=12	2018

Hallgrimsson1:5	Hallgrimsson1	bone dimensions	(none)	square root of the summed squared distance of each 3D landmark from the mean landmark position (centroid) of that specimen centroid 110551	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:6	Hallgrimsson1	bone dimensions	(none)	midline superior incisor, right side, x coordinate [mm] lm1_x 110552	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:7	Hallgrimsson1	bone dimensions	(none)	midline superior incisor, right side, y coordinate [mm] lm1_y 110553	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:8	Hallgrimsson1	bone dimensions	(none)	midline superior incisor, right side, z coordinate [mm] lm1_z 110554	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:12	Hallgrimsson1	bone dimensions	(none)	anterior margin of incisive foramen, right side, x coordinate [mm] lm3_x 110558	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:13	Hallgrimsson1	bone dimensions	(none)	anterior margin of incisive foramen, right side, y coordinate [mm] lm3_y 110559	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:14	Hallgrimsson1	bone dimensions	(none)	anterior margin of incisive foramen, right side, z coordinate [mm] lm3_z 110560	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:18	Hallgrimsson1	bone dimensions	(none)	posterior incisive foramen, right side, x coordinate [mm] lm5_x 110564	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:19	Hallgrimsson1	bone dimensions	(none)	posterior incisive foramen, right side, y coordinate [mm] lm5_y 110565	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:20	Hallgrimsson1	bone dimensions	(none)	posterior incisive foramen, right side, z coordinate [mm] lm5_z 110566	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:21	Hallgrimsson1	bone dimensions	(none)	anterior superior alveoli, right side, x coordinate [mm] lm6_x 110567	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:22	Hallgrimsson1	bone dimensions	(none)	anterior superior alveoli, right side, y coordinate [mm] lm6_y 110568	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:23	Hallgrimsson1	bone dimensions	(none)	anterior superior alveoli, right side, z coordinate [mm] lm6_z 110569	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:24	Hallgrimsson1	bone dimensions	(none)	posterior superior alveoli, right side, x coordinate [mm] lm7_x 110570	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:25	Hallgrimsson1	bone dimensions	(none)	posterior superior alveoli, right side, y coordinate [mm] lm7_y 110571	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:26	Hallgrimsson1	bone dimensions	(none)	posterior superior alveoli, right side, z coordinate [mm] lm7_z 110572	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:27	Hallgrimsson1	bone dimensions	(none)	intersection of frontal suture with orbital rim, right side, x coordinate [mm] lm8_x 110573	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:28	Hallgrimsson1	bone dimensions	(none)	intersection of frontal suture with orbital rim, right side, y coordinate [mm] lm8_y 110574	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:29	Hallgrimsson1	bone dimensions	(none)	intersection of frontal suture with orbital rim, right side, z coordinate [mm] lm8_z 110575	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:30	Hallgrimsson1	bone dimensions	(none)	anterior inferior zygomatic, right side, x coordinate [mm] lm9_x 110576	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:31	Hallgrimsson1	bone dimensions	(none)	anterior inferior zygomatic, right side, y coordinate [mm] lm9_y 110577	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:32	Hallgrimsson1	bone dimensions	(none)	anterior inferior zygomatic, right side, z coordinate [mm] lm9_z 110578	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:33	Hallgrimsson1	bone dimensions	(none)	lateral point along frontal suture, right side, x coordinate [mm] lm10_x 110579	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:34	Hallgrimsson1	bone dimensions	(none)	lateral point along frontal suture, right side, y coordinate [mm] lm10_y 110580	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:35	Hallgrimsson1	bone dimensions	(none)	lateral point along frontal suture, right side, z coordinate [mm] lm10_z 110581	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:36	Hallgrimsson1	bone dimensions	(none)	nasion, x coordinate [mm] lm11_x 110582	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:37	Hallgrimsson1	bone dimensions	(none)	nasion, y coordinate [mm] lm11_y 110583	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:38	Hallgrimsson1	bone dimensions	(none)	nasion, z coordinate [mm] lm11_z 110584	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:39	Hallgrimsson1	bone dimensions	(none)	midline endocranial point at the intersection of the frontal bones and the anterior most point of the cribriform plate of the ethmoid, generally placed on the frontal bone, x coordinate [mm] lm12_x 110585	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:40	Hallgrimsson1	bone dimensions	(none)	midline endocranial point at the intersection of the frontal bones and the anterior most point of the cribriform plate of the ethmoid, generally placed on the frontal bone, y coordinate [mm] lm12_y 110586	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:41	Hallgrimsson1	None	(none)	midline endocranial point at the intersection of the frontal bones and the anterior most point of the cribriform plate of the ethmoid, generally placed on the frontal bone, z coordinate [mm] lm12_z 110587	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:42	Hallgrimsson1	bone dimensions	(none)	midline superior incisor, left side, x coordinate [mm] lm13_x 110588	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:43	Hallgrimsson1	bone dimensions	(none)	midline superior incisor, left side, y coordinate [mm] lm13_y 110589	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:44	Hallgrimsson1	bone dimensions	(none)	midline superior incisor, left side, z coordinate [mm] lm13_z 110590	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:48	Hallgrimsson1	bone dimensions	(none)	anterior margin of incisive foramen, left side, x coordinate [mm] lm15_x 110594	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:49	Hallgrimsson1	bone dimensions	(none)	anterior margin of incisive foramen, left side, y coordinate [mm] lm15_y 110595	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:50	Hallgrimsson1	bone dimensions	(none)	anterior margin of incisive foramen, left side, z coordinate [mm] lm15_z 110596	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:54	Hallgrimsson1	bone dimensions	(none)	posterior incisive foramen, left side, x coordinate [mm] lm17_x 110600	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:55	Hallgrimsson1	bone dimensions	(none)	posterior incisive foramen, left side, y coordinate [mm] lm17_y 110601	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:56	Hallgrimsson1	bone dimensions	(none)	posterior incisive foramen, left side, z coordinate [mm] lm17_z 110602	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:57	Hallgrimsson1	bone dimensions	(none)	anterior superior alveoli, left side, x coordinate [mm] lm18_x 110603	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:58	Hallgrimsson1	bone dimensions	(none)	anterior superior alveoli, left side, y coordinate [mm] lm18_y 110604	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:59	Hallgrimsson1	bone dimensions	(none)	anterior superior alveoli, left side, z coordinate [mm] lm18_z 110605	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:60	Hallgrimsson1	bone dimensions	(none)	posterior superior alveoli, left side, x coordinate [mm] lm19_x 110606	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:61	Hallgrimsson1	bone dimensions	(none)	posterior superior alveoli, left side, y coordinate [mm] lm19_y 110607	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:62	Hallgrimsson1	bone dimensions	(none)	posterior superior alveoli, left side, z coordinate [mm] lm19_z 110608	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:63	Hallgrimsson1	bone dimensions	(none)	intersection of frontal suture with orbital rim, left side, x coordinate [mm] lm20_x 110609	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:64	Hallgrimsson1	bone dimensions	(none)	intersection of frontal suture with orbital rim, left side, y coordinate [mm] lm20_y 110610	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:65	Hallgrimsson1	bone dimensions	(none)	intersection of frontal suture with orbital rim, left side, z coordinate [mm] lm20_z 110611	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:66	Hallgrimsson1	bone dimensions	(none)	anterior inferior zygomatic, left side, x coordinate [mm] lm21_x 110612	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:67	Hallgrimsson1	bone dimensions	(none)	anterior inferior zygomatic, left side, y coordinate [mm] lm21_y 110613	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:68	Hallgrimsson1	bone dimensions	(none)	anterior inferior zygomatic, left side, z coordinate [mm] lm21_z 110614	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:69	Hallgrimsson1	bone dimensions	(none)	lateral point along frontal suture, left side, x coordinate [mm] lm22_x 110615	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:70	Hallgrimsson1	bone dimensions	(none)	lateral point along frontal suture, left side, y coordinate [mm] lm22_y 110616	DO population		both	8-60wks	N=574	2020

Hallgrimsson1:71	Hallgrimsson1	bone dimensions	(none)	lateral point along frontal suture, left side, z coordinate [mm] lm22_z 110617	DO population		both	8-60wks	N=574	2020

Iraqi1:1	Iraqi1	computed tomography	P.gingivalis and F.nucleatum	bone volume of the maxillary jaw (x 10^-3), uninfected [mm³] control_bone_vol 49501	CC pre	23	both	8wks	N=4	2013

Iraqi1:2	Iraqi1	computed tomography	P.gingivalis and F.nucleatum	residual bone volume of the maxillary jaw (x 10^-3), post-infection (peridontitis) [mm³] residual_bone_vol 49502	CC pre	23	both	8wks	N=3	2013

Ishimori1:12	Ishimori1	DXA	high-fat diet	total body area bone mineral density (BMD) [mg/mm²] BMD_total 14012	QTL population		f	20wks	N=294	2004

Ishimori1:13	Ishimori1	DXA	high-fat diet	vertebral areal bone mineral density (BMD) [mg/mm²] BMD_vertebral 14013	QTL population		f	20wks	N=294	2004

JaxKOMP-EAP:113	JaxKOMP-EAP	observation (SHIRPA)	(none)	teeth presence teeth_presence 100407 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:114	JaxKOMP-EAP	observation (SHIRPA)	(none)	upper teeth appearance upper_teeth_appearance 100408 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:115	JaxKOMP-EAP	observation (SHIRPA)	(none)	lower teeth appearance lower_teeth_appearance 100409 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:312	JaxKOMP-EAP	X-ray	(none)	cervical processes cervical_processes 100641 categorical	KOMP	18	both	14wks		2017

JaxKOMP-EAP:317	JaxKOMP-EAP	X-ray	(none)	fusion of ribs fusion_of_ribs 100648 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:318	JaxKOMP-EAP	X-ray	(none)	fusion of vertebrae fusion_of_vertebrae 100649 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:323	JaxKOMP-EAP	X-ray	(none)	mandibles mandibles 100655 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:324	JaxKOMP-EAP	X-ray	(none)	maxilla maxilla 100656 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:325	JaxKOMP-EAP	X-ray	(none)	number of caudal vertebrae caudal_vertebrae number_of_caudal_vertebrae 100657	KOMP		both	14wks	N=4	2017

JaxKOMP-EAP:326	JaxKOMP-EAP	X-ray	(none)	number of cervical vertebrae cervical_vertebrae number_of_cervical_vertebrae 100658	KOMP	753	both	14wks	N=4	2017

JaxKOMP-EAP:328	JaxKOMP-EAP	X-ray	(none)	number of lumbar vertebrae lumbar_vertebrae number_of_lumbar_vertebrae 100660	KOMP	753	both	14wks	N=4	2017

JaxKOMP-EAP:329	JaxKOMP-EAP	X-ray	(none)	number of pelvic vertebrae pelvic_vertebrae number_of_pelvic_vertebrae 100661	KOMP	753	both	14wks	N=4	2017

JaxKOMP-EAP:330	JaxKOMP-EAP	X-ray	(none)	number of ribs left ribs_left number_of_ribs_left 100662	KOMP	753	both	14wks	N=4	2017

JaxKOMP-EAP:331	JaxKOMP-EAP	X-ray	(none)	number of ribs right ribs_right number_of_ribs_right 100663	KOMP	753	both	14wks	N=4	2017

JaxKOMP-EAP:332	JaxKOMP-EAP	X-ray	(none)	number of thoracic vertebrae thoracic_vertebrae number_of_thoracic_vertebrae 100664	KOMP	753	both	14wks	N=4	2017

JaxKOMP-EAP:335	JaxKOMP-EAP	X-ray	(none)	processes on vertebrae vertebrae_processes processes_on_vertebrae 100667 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:339	JaxKOMP-EAP	X-ray	(none)	shape of ribs shape_of_ribs 100673 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:341	JaxKOMP-EAP	X-ray	(none)	shape of vertebrae shape_of_vertebrae 100675 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:342	JaxKOMP-EAP	X-ray	(none)	skull shape skull_shape 100676 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:344	JaxKOMP-EAP	X-ray	(none)	teeth teeth 100678 categorical	KOMP	76	both	14wks		2017

JaxKOMP-EAP:346	JaxKOMP-EAP	X-ray	(none)	transitional vertebrae transitional_vertebrae 100682 categorical	KOMP	30	both	14wks		2017

JaxKOMP-EAP:348	JaxKOMP-EAP	X-ray	(none)	zygomatic bone zygomatic_bone 100684 categorical	KOMP	76	both	14wks		2017

JaxKOMP-LAP:102	JaxKOMP-LAP	observation (SHIRPA)	(none)	teeth presence teeth_presence 101407 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:103	JaxKOMP-LAP	observation (SHIRPA)	(none)	upper teeth appearance upper_teeth_appearance 101408 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:104	JaxKOMP-LAP	observation (SHIRPA)	(none)	lower teeth appearance lower_teeth_appearance 101409 categorical	KOMP	148	both	66-72wks		2021

Vinyard1:1	Vinyard1	bone dimensions	(none)	distance between upper and lower incisor tips at maximum passive jaw opening (maximum gape) [mm] max_gape 30401	inbred	21	both	9-12wks	N=10	2009

Vinyard1:2	Vinyard1	bone dimensions	(none)	masseter attachment ratio [ratio] masseter_attach_ratio 30402	inbred	21	both	9-12wks	N=10	2009

Vinyard1:3	Vinyard1	bone dimensions	(none)	distance from the incisor alveolus to the caudal surface of the mandibular condyle (jaw length) [mm] jaw_length 30403	inbred	21	both	9-12wks	N=10	2009

Vinyard1:4	Vinyard1	bone dimensions	(none)	length of rostral-caudal condylar articular surface (condyle length) [mm] condyle_length 30404	inbred	21	both	9-12wks	N=10	2009

Vinyard1:5	Vinyard1	bone dimensions	(none)	height of condylar articular surface [mm] condyle_art_hgt 30405	inbred	21	both	9-12wks	N=10	2009

Vinyard1:6	Vinyard1	bone dimensions	(none)	angle of condylar curvature [deg] condyle_curve 30406	inbred	21	both	9-12wks	N=10	2009

Vinyard1:7	Vinyard1	bone dimensions	(none)	height of the condyle above the molar tooth row [mm] condyle_height 30407	inbred	21	both	9-12wks	N=10	2009

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